genome.fa.s2.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  24  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5813127--5813168	19	2.2	19	83	8	50	38	0	0	61	0.96
5813229--5813303	29	2.6	29	76	0	78	33	4	2	60	1.30
5814249--5814325	12	6.4	12	80	5	75	66	2	28	2	1.18
5814248--5814334	36	2.4	36	86	3	113	64	3	29	2	1.22
5820647--5820694	3	15.0	3	79	12	51	39	0	0	60	0.97
5820635--5820688	15	3.5	15	85	14	74	40	0	1	57	1.09
5820600--5820710	32	3.4	33	74	17	99	46	0	0	52	1.06
5820649--5820720	22	3.4	22	80	3	85	41	0	0	58	0.98
5820636--5820693	7	8.0	7	78	19	57	41	0	1	56	1.09
5820698--5820740	18	2.5	17	80	3	50	41	0	0	58	0.98
5828038--5828078	18	2.2	19	86	4	57	41	4	2	51	1.36
5829016--5829078	28	2.3	27	86	2	81	26	6	3	63	1.34
5829016--5829092	27	2.9	27	84	7	86	24	6	3	64	1.34
5829553--5829597	10	4.4	10	94	2	63	22	0	13	64	1.28
5833120--5833178	30	2.0	30	96	0	109	42	18	11	27	1.85
5835733--5835779	3	15.7	3	100	0	94	65	0	0	34	0.93
5841982--5842036	3	18.7	3	96	3	103	69	0	0	30	0.89
5845714--5845757	23	2.0	20	87	12	61	45	0	0	54	0.99
5848340--5848381	17	2.4	18	84	8	59	45	0	0	54	0.99
5848676--5848709	14	2.5	14	90	4	52	47	0	0	52	1.00
5852035--5852085	26	2.0	26	84	0	66	50	1	0	47	1.12
5859120--5859257	68	2.0	68	84	0	177	27	15	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5859261--5859343	42	2.0	42	97	0	157	40	9	21	27	1.84
5859202--5859483	140	2.0	140	100	0	564	33	12	22	31	1.91
5859401--5859483	42	2.0	42	97	0	157	40	9	21	27	1.84
5859692--5859738	19	2.5	19	93	3	78	48	19	2	29	1.60
5867829--5867871	20	2.2	20	87	8	61	9	16	2	72	1.21
5868084--5868123	2	20.0	2	100	0	80	50	0	0	50	1.00
5869025--5869078	16	3.4	16	80	7	56	51	3	1	42	1.30
5869162--5869210	21	2.3	21	78	0	53	46	2	2	48	1.25
5869577--5869611	19	1.9	19	88	11	56	45	0	0	54	0.99
5870019--5870054	14	2.5	14	90	4	54	52	2	0	44	1.15
5870175--5870226	26	2.0	27	81	11	63	38	13	3	44	1.62
5870803--5870863	24	2.5	25	84	7	81	42	1	0	55	1.09
5872022--5872050	2	14.5	2	100	0	58	51	0	0	48	1.00
5872336--5872360	2	12.5	2	100	0	50	48	0	0	52	1.00
5873521--5873574	21	2.6	21	77	13	67	50	0	0	50	1.00
5876598--5876708	56	2.0	55	89	5	170	33	18	13	35	1.89
5878903--5878951	19	2.4	21	90	6	75	34	18	2	44	1.61
5879046--5879117	22	3.3	21	75	5	63	30	23	1	44	1.62
5880142--5880171	9	3.2	9	95	4	51	63	0	0	36	0.95
5880144--5880173	10	3.1	10	95	4	53	63	0	0	36	0.95
5883039--5883068	2	15.0	2	92	0	51	50	0	3	46	1.18
5888149--5888178	2	15.0	2	92	0	51	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5888571--5888605	17	2.2	17	90	10	56	68	0	2	28	1.04
5888571--5888617	17	2.6	18	77	16	53	68	0	4	27	1.08
5889279--5889315	19	2.0	19	89	5	58	29	2	0	67	1.04
5889660--5889795	68	2.0	69	88	4	204	41	19	3	35	1.70
5898186--5898218	11	3.0	11	95	0	57	21	0	0	78	0.75
5898187--5898221	14	2.5	14	90	9	54	20	0	0	80	0.72
5899182--5899250	23	3.1	23	87	8	90	63	1	26	8	1.31
5903438--5903622	102	1.8	101	87	5	275	53	6	9	30	1.58
5926934--5926978	3	15.0	3	100	0	90	66	0	0	33	0.92
5926977--5927012	3	12.0	3	100	0	72	33	0	0	66	0.92
5934545--5934571	14	1.9	14	100	0	54	59	0	22	18	1.38
5935305--5935346	19	2.2	19	100	0	84	28	16	14	40	1.88
5941372--5941425	6	9.0	6	77	0	54	46	0	0	53	1.00
5941361--5941413	24	2.2	25	96	3	99	41	1	0	56	1.10
5941372--5941425	24	2.2	24	87	6	74	46	0	0	53	1.00
5945123--5945177	24	2.3	24	93	0	92	32	10	18	38	1.85
5945402--5945453	19	2.7	20	73	11	54	34	0	3	61	1.14
5945631--5945679	25	2.0	25	84	11	66	38	4	8	48	1.52
5949756--5949797	22	1.9	22	90	0	66	45	9	11	33	1.73
5953700--5953741	22	1.9	22	85	0	57	47	7	11	33	1.68
5957981--5958041	26	2.4	27	86	10	92	34	0	1	63	1.04
5957996--5958057	26	2.4	26	84	10	74	32	3	1	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5970804--5970874	6	11.8	6	73	5	63	25	0	5	69	1.10
5970788--5970862	19	3.7	20	77	14	64	25	1	6	66	1.24
5970802--5970874	25	3.0	25	80	6	96	26	0	5	68	1.11
5971687--5971789	19	5.4	18	71	14	73	17	4	1	75	1.07
5971688--5971787	6	16.8	6	68	17	57	17	5	2	76	1.06
5971940--5971990	20	2.8	18	76	23	61	33	5	13	47	1.67
5976210--5976251	11	3.9	11	81	6	59	78	0	11	9	0.96
5976210--5976271	21	3.1	19	82	13	72	79	0	14	6	0.93
5976245--5976274	11	2.7	11	94	0	51	80	0	16	3	0.85
5976978--5977214	124	1.9	124	86	3	343	50	10	21	16	1.75
5977475--5977517	21	2.0	21	86	8	61	30	0	20	48	1.50
5977599--5978121	18	29.2	18	69	10	198	31	17	13	37	1.89
5977875--5978016	53	2.7	53	75	13	139	34	16	13	35	1.88
5978004--5978139	35	3.9	35	83	2	157	30	16	11	41	1.84
5978037--5978141	52	2.0	53	83	1	131	28	16	12	42	1.84
5978024--5978121	17	5.6	17	70	3	61	29	18	12	39	1.87
5978193--5978272	34	2.3	35	89	2	117	35	12	11	41	1.79
5978137--5978307	36	4.9	35	79	2	146	29	9	11	49	1.72
5978632--5978730	6	16.8	6	84	6	123	27	1	4	67	1.15
5979636--5979702	15	4.9	14	73	17	61	13	8	2	74	1.17
5979626--5979687	24	2.4	26	84	10	83	14	8	1	75	1.10
5979645--5979697	24	2.2	25	82	3	63	11	11	3	73	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5979786--5979815	15	2.0	15	93	0	51	20	6	10	63	1.47
5979757--5979829	38	1.9	38	81	10	87	21	5	8	64	1.41
5979877--5979928	20	2.8	18	71	23	54	28	5	13	51	1.64
5979952--5979991	13	3.0	13	85	7	53	32	7	12	47	1.69
5979958--5979997	14	2.9	14	88	3	55	32	7	10	50	1.64
5987700--5987842	40	3.7	37	73	19	105	44	6	3	45	1.48
5987731--5987842	40	2.9	38	77	15	106	41	8	3	46	1.50
5988182--5988220	18	2.2	18	90	0	60	10	0	10	79	0.94
5991608--5991643	2	18.5	2	94	5	65	50	0	0	50	1.00
5991754--5991788	18	1.9	18	88	0	52	42	0	0	57	0.99
5991761--5991799	13	2.9	14	77	14	55	41	0	0	58	0.98
5992109--5992134	2	13.0	2	100	0	52	0	0	50	50	1.00
5994630--5994672	20	2.3	19	88	8	61	65	0	2	32	1.06
5996396--5996433	13	2.8	14	81	18	53	65	13	21	0	1.26
6000158--6000214	30	1.9	30	92	0	96	43	3	5	47	1.43
6002342--6002399	24	2.5	23	76	13	64	29	10	8	51	1.65
6002976--6003025	27	1.9	25	84	8	64	50	0	2	48	1.12
6006784--6006840	3	19.3	3	96	3	107	68	0	0	31	0.90
6006901--6006951	25	2.1	24	85	10	68	70	1	3	23	1.14
6010418--6010457	21	1.9	21	89	0	62	7	10	5	77	1.11
6010414--6010476	25	2.6	23	87	7	81	9	6	3	80	0.98
6010410--6010479	29	2.4	29	85	2	88	10	5	2	81	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6010410--6010476	12	5.7	11	75	16	55	8	5	2	82	0.94
6010550--6010901	59	5.9	59	83	10	432	46	8	11	33	1.71
6010541--6010917	186	2.1	177	85	9	508	48	8	11	32	1.69
6014679--6014722	21	2.0	22	86	4	63	77	0	18	4	0.94
6015957--6016568	40	15.0	41	91	5	948	22	17	22	37	1.94
6015957--6016568	81	7.5	81	90	6	933	22	17	22	37	1.94
6016579--6016645	8	8.6	8	88	8	95	88	11	0	0	0.53
6016579--6016637	11	5.3	11	88	11	93	89	10	0	0	0.47
6016579--6016637	15	3.9	15	86	8	84	89	10	0	0	0.47
6016579--6016645	23	3.0	22	89	8	100	88	11	0	0	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131