genome.fa.s2.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  67  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12920006--12920058	26	2.0	26	96	0	97	26	26	18	28	1.98
12921641--12921693	26	2.0	26	96	0	97	26	24	20	28	1.99
12920887--12922407	737	2.1	737	90	1	2379	26	24	23	25	2.00
12922543--12922592	26	1.9	26	91	0	82	26	28	20	26	1.99
12923435--12923487	26	2.0	26	96	0	97	26	24	20	28	1.99
12921612--12927986	926	7.1	893	83	6	7512	26	24	23	25	2.00
12924335--12924387	26	2.0	26	96	0	97	28	22	20	28	1.99
12926118--12926170	26	2.0	26	92	0	88	32	24	15	28	1.95
12926197--12926254	17	3.5	17	77	17	77	17	24	32	25	1.96
12926214--12926264	15	3.3	15	75	20	59	15	25	33	25	1.95
12926197--12926264	32	2.1	32	100	0	136	16	25	33	25	1.95
12927907--12927959	26	2.0	26	100	0	106	26	26	20	26	1.99
12928963--12929015	26	2.0	26	96	0	97	26	28	18	26	1.98
12931370--12931422	26	2.0	26	92	0	88	30	24	18	26	1.98
12933046--12933098	26	2.0	26	96	0	97	28	26	18	26	1.98
12932351--12937710	896	6.0	894	86	3	7075	25	24	24	25	2.00
12937540--12937590	26	2.0	26	100	0	102	27	25	19	27	1.99
12938270--12938322	26	2.0	26	88	0	79	26	22	22	28	1.99
12939168--12939220	26	2.0	26	96	0	97	28	26	18	26	1.98
12940082--12940134	26	2.0	26	100	0	106	26	26	20	26	1.99
12937707--12940845	914	3.5	896	86	4	4218	26	23	23	25	2.00
12941158--12941549	210	1.9	211	91	0	642	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12942628--12942680	26	2.0	26	88	0	79	28	22	18	30	1.98
12941724--12944123	894	2.7	874	83	7	3068	26	23	24	26	2.00
12944923--12944975	26	2.0	26	88	0	79	30	24	16	28	1.97
12945831--12945883	26	2.0	26	92	0	88	26	26	20	26	1.99
12947638--12947690	26	2.0	26	96	0	97	26	24	22	26	2.00
12949391--12954561	896	5.9	893	83	6	6418	25	25	23	25	2.00
12951155--12951207	26	2.0	26	89	7	81	24	22	20	32	1.98
12948154--12954552	896	7.2	893	78	8	6408	25	25	23	25	2.00
12955376--12955428	26	2.0	26	88	0	79	30	26	18	24	1.98
12956288--12956340	26	2.0	26	96	0	97	26	24	20	28	1.99
12957186--12957237	26	2.0	26	92	0	86	28	25	17	28	1.97
12954506--12958859	899	4.8	897	86	3	5808	25	24	24	25	2.00
12958081--12958132	26	2.0	26	100	0	104	23	23	23	30	1.99
12958107--12963148	707	7.1	709	86	2	6357	26	23	23	25	2.00
12963251--12963303	26	2.0	26	88	0	79	24	28	16	30	1.97
12962387--12965846	902	3.8	900	85	3	4583	25	24	23	25	2.00
12965087--12967285	714	3.1	713	85	2	2862	26	23	22	26	2.00
12968311--12968363	26	2.0	26	85	0	70	26	18	20	33	1.96
12966518--12969078	915	2.8	901	86	3	3410	25	24	23	25	2.00
12968337--12970526	713	3.1	710	87	3	3099	26	24	23	25	2.00
12970637--12970689	26	2.0	26	92	0	88	28	24	18	28	1.98
12971374--12971723	159	2.2	159	81	2	398	21	27	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12971697--12971749	26	2.0	26	85	0	70	26	20	22	30	1.98
12972605--12972683	26	3.0	26	98	0	149	27	25	20	26	1.99
12973527--12973578	26	2.0	26	88	0	77	28	21	19	30	1.97
12972631--12979505	879	7.7	900	85	3	8848	25	24	24	25	2.00
12972657--12979505	883	7.7	877	84	4	8008	25	24	24	25	2.00
12977988--12978040	26	2.0	26	96	0	97	26	24	20	28	1.99
12978891--12978942	25	2.0	26	96	3	97	26	25	21	26	1.99
12978796--12980258	752	1.9	750	88	1	2187	26	23	24	25	2.00
12980521--12980573	26	2.0	26	92	0	88	30	22	16	30	1.96
12981401--12981453	26	2.0	26	92	0	88	26	22	20	30	1.98
12979547--12982182	890	3.0	879	85	3	3385	25	24	23	25	2.00
12982924--12982976	26	2.0	26	100	0	106	26	26	20	26	1.99
12984712--12984764	26	2.0	26	96	0	97	26	20	20	32	1.98
12985613--12985663	26	2.0	26	92	0	84	29	23	17	29	1.97
12982469--12988231	898	6.5	891	85	4	7157	26	24	23	25	2.00
12986087--12986145	26	2.2	26	78	3	64	64	10	3	22	1.39
12986515--12986567	26	2.0	26	88	0	79	28	24	18	28	1.98
12989809--12989861	26	2.0	26	96	0	97	26	24	20	28	1.99
12988226--12993273	902	5.6	902	86	3	6755	26	24	23	25	2.00
12990706--12990758	26	2.0	26	92	0	88	28	24	18	28	1.98
12992500--12993989	718	2.1	717	88	1	2239	27	23	23	25	2.00
12994121--12996334	717	3.1	716	86	4	3068	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12996420--12996492	26	2.8	26	89	0	119	26	21	19	32	1.97
12998060--12998112	26	2.0	26	85	0	70	30	24	18	26	1.98
12998933--12998983	26	2.0	26	92	0	84	35	25	13	25	1.93
12997189--12999625	884	2.7	886	87	4	3441	26	24	23	24	2.00
13000339--13000373	4	8.8	4	100	0	70	0	74	25	0	0.82
13000556--13000606	26	2.0	26	92	0	84	35	25	13	25	1.93
13002008--13002057	26	1.9	26	100	0	100	24	26	22	28	1.99
13001292--13002772	741	2.0	742	86	4	2078	26	24	23	24	2.00
13002906--13002955	26	1.9	26	95	0	91	28	28	14	30	1.95
13004263--13004302	16	2.5	16	95	0	71	0	65	25	10	1.24
13004481--13004533	26	2.0	26	88	0	79	30	24	16	28	1.97
13005899--13005951	26	2.0	26	89	7	81	26	24	18	30	1.98
13004640--13006641	722	2.8	729	86	4	2574	27	23	21	26	1.99
13008203--13008255	26	2.0	26	85	7	72	28	24	16	30	1.97
13009096--13009148	26	2.0	26	96	0	97	28	26	18	26	1.98
13008171--13011625	893	3.9	894	84	6	4384	25	24	23	25	2.00
13010862--13010911	26	1.9	26	91	0	82	24	26	20	30	1.98
13012316--13012368	26	2.0	26	96	0	97	26	24	20	28	1.99
13013208--13013260	26	2.0	26	88	0	79	28	26	18	26	1.98
13012665--13014000	737	1.8	733	86	3	1929	26	25	23	25	2.00
13013945--13013997	26	2.0	26	96	0	97	26	24	20	28	1.99
13013975--13015423	713	2.0	706	86	1	2040	27	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13014681--13019062	898	4.9	895	85	3	5629	26	24	23	25	2.00
13016447--13016499	26	2.0	26	89	7	81	30	26	16	26	1.97
13018223--13018275	26	2.0	26	96	0	97	26	24	22	26	2.00
13021238--13021290	26	2.0	26	96	0	97	26	24	20	28	1.99
13022283--13022308	9	2.9	9	100	0	52	0	11	76	11	1.01
13021264--13023802	899	2.9	872	83	5	3092	26	23	24	25	2.00
13026007--13026058	26	2.0	26	92	0	86	28	26	15	28	1.96
13027785--13027842	26	2.2	26	84	3	71	31	22	18	27	1.97
13025616--13051280	891	28.3	898	76	9	18879	25	24	24	25	2.00
13028676--13028733	26	2.2	26	90	3	89	27	22	20	29	1.99
13030446--13030498	26	2.0	26	85	0	70	28	28	16	26	1.97
13031352--13031401	26	1.9	26	95	0	91	28	26	18	28	1.98
13032039--13032064	4	6.5	4	100	0	52	0	73	26	0	0.84
13032245--13032295	26	2.0	26	96	0	93	25	25	19	29	1.99
13033142--13033194	26	2.0	26	96	0	97	28	26	16	28	1.97
13034036--13034088	26	2.0	26	96	0	97	26	24	20	28	1.99
13034937--13034989	26	2.0	26	92	0	88	24	24	24	26	2.00
13035823--13035875	26	2.0	26	89	7	81	33	28	13	24	1.93
13037376--13037427	26	2.0	26	96	0	95	26	26	17	28	1.97
13038887--13038939	26	2.0	26	96	0	97	26	24	20	28	1.99
13038071--13051280	895	14.8	891	85	4	16073	25	24	23	25	2.00
13041555--13041607	26	2.0	26	92	0	88	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13043351--13043404	26	2.1	26	93	6	92	25	22	24	27	2.00
13044246--13044295	26	1.9	26	95	0	91	28	26	18	28	1.98
13046926--13046978	26	2.0	26	96	0	97	26	24	20	28	1.99
13050490--13050541	26	2.0	26	96	0	95	26	25	21	26	1.99
13045138--13051280	896	6.8	902	85	3	7906	25	24	23	25	2.00
13050515--13053419	720	4.1	715	86	3	3912	26	24	22	26	2.00
13055340--13055393	9	5.5	10	80	14	51	29	0	7	62	1.22
13055422--13055470	24	2.0	25	84	11	66	36	0	6	57	1.24
13055459--13055499	3	14.7	3	80	14	52	26	0	0	73	0.84
13055429--13055499	25	2.8	27	80	16	73	30	0	2	66	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131