genome.fa.s2.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  116  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20816347--20816414	29	2.4	29	82	7	77	20	2	8	67	1.31
20816342--20816407	28	2.2	28	78	10	69	21	3	7	68	1.29
20816872--20816926	21	2.6	21	82	8	67	69	1	5	23	1.19
20819944--20819971	5	5.6	5	100	0	56	17	0	0	82	0.68
20821279--20821336	19	3.0	19	74	2	62	60	6	10	22	1.53
20822186--20822227	21	1.9	22	90	9	68	73	2	0	23	0.94
20823047--20823386	43	7.7	43	75	9	285	45	15	12	27	1.82
20823194--20823378	48	4.0	48	75	11	156	46	15	12	25	1.81
20823047--20823386	135	2.6	132	79	10	385	45	15	12	27	1.82
20823444--20823509	23	2.9	22	90	2	69	36	18	13	31	1.90
20823453--20823509	23	2.5	23	97	0	105	36	17	14	31	1.89
20823901--20823951	16	3.1	16	78	10	57	39	13	9	37	1.78
20823909--20823969	16	3.7	16	76	8	50	42	11	9	36	1.74
20824021--20824085	17	3.8	17	89	0	94	36	12	18	32	1.88
20824026--20824100	17	4.4	17	84	5	71	42	13	14	29	1.84
20825482--20825534	19	2.8	19	88	0	79	9	15	1	73	1.17
20825797--20825821	9	2.8	9	100	0	50	8	0	0	92	0.40
20830611--20830676	24	2.8	24	82	8	75	69	3	3	24	1.16
20831491--20831521	2	15.5	2	100	0	62	48	0	0	51	1.00
20833540--20833572	14	2.4	14	94	0	57	33	0	9	57	1.30
20839497--20839537	16	2.7	15	82	17	50	19	2	12	65	1.36
20840194--20840261	29	2.3	30	82	5	84	41	4	0	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20844043--20844158	58	2.0	58	93	0	196	37	23	15	23	1.93
20846047--20846107	7	8.7	7	79	13	72	49	0	0	50	1.00
20846041--20846099	27	2.1	28	87	9	86	54	0	0	45	0.99
20846054--20846106	16	2.9	19	75	16	58	50	0	0	49	1.00
20858046--20858117	29	2.3	30	76	9	83	52	0	2	44	1.15
20859100--20859143	20	2.2	20	84	11	56	68	2	0	29	1.02
20859096--20859151	29	1.9	29	85	0	76	66	1	0	32	1.03
20859302--20859345	20	2.3	18	82	17	54	68	2	0	29	1.02
20859479--20859511	14	2.4	14	90	10	50	72	15	3	9	1.21
20862119--20862144	2	13.0	2	100	0	52	50	0	0	50	1.00
20862748--20862851	52	2.0	52	100	0	208	26	19	17	36	1.94
20866270--20866304	17	2.1	17	100	0	70	40	11	0	48	1.39
20872114--20872152	2	20.0	2	94	5	71	51	0	0	48	1.00
20881497--20881847	176	2.0	176	97	0	666	39	14	17	28	1.89
20889883--20889913	16	1.9	16	93	0	53	45	0	0	54	0.99
20889888--20889932	14	3.1	14	87	6	54	37	0	2	60	1.09
20897331--20897451	60	2.0	60	100	0	242	28	13	13	45	1.80
20899369--20899393	2	12.5	2	100	0	50	48	0	0	52	1.00
20901675--20901701	2	13.5	2	100	0	54	51	0	0	48	1.00
20910841--20910893	27	2.0	27	84	0	70	20	20	45	13	1.84
20911150--20911179	3	10.0	3	92	0	51	0	0	63	36	0.95
20911699--20911756	6	9.7	6	84	0	53	17	5	72	5	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20918871--20918895	13	1.9	13	100	0	50	56	8	0	36	1.29
20919122--20919164	22	2.0	22	85	0	59	39	2	0	58	1.11
20920717--20920759	14	3.1	14	83	3	61	53	0	0	46	1.00
20921809--20921885	27	2.7	29	84	10	95	45	5	0	49	1.24
20922993--20923017	13	1.9	13	100	0	50	40	0	0	60	0.97
20933109--20933137	14	2.0	15	93	6	51	68	0	6	24	1.13
20933703--20933746	14	2.9	15	90	10	72	52	0	0	47	1.00
20933703--20933747	15	3.1	14	84	9	63	53	0	0	46	1.00
20934058--20934115	28	2.1	28	81	12	66	46	1	1	50	1.22
20934635--20934681	13	3.9	12	83	10	60	36	2	0	61	1.08
20936320--20936349	15	1.9	16	93	6	53	56	0	0	43	0.99
20936664--20936769	11	8.9	11	67	20	54	37	4	1	55	1.32
20937118--20937177	28	2.2	28	84	3	77	51	10	0	38	1.35
20937127--20937177	14	3.8	13	85	10	66	49	9	0	41	1.36
20942367--20942423	26	2.2	26	83	0	69	42	24	1	31	1.65
20945498--20945535	19	2.0	20	94	5	69	73	2	0	23	0.95
20945774--20945818	20	2.2	20	88	7	65	53	0	0	46	1.00
20945786--20945824	19	2.0	20	85	5	53	53	0	0	46	1.00
20945809--20945869	16	3.6	17	77	18	74	65	1	0	32	1.02
20946829--20946958	64	2.0	64	93	0	224	31	8	15	44	1.76
20947081--20947135	16	3.4	16	77	5	65	65	0	1	32	1.03
20947081--20947153	24	3.2	23	76	16	64	61	0	1	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20950152--20950195	17	2.6	17	79	10	54	18	2	2	77	0.98
20950302--20950342	14	2.9	14	81	0	55	21	4	0	73	1.02
20960989--20961094	47	2.3	47	93	3	178	33	20	15	30	1.93
20960989--20961130	47	3.1	47	86	5	148	37	19	14	28	1.92
20961128--20961231	43	2.4	43	79	6	113	46	18	4	30	1.70
20964043--20964133	33	2.8	33	84	1	112	40	9	20	28	1.85
20964089--20964264	33	5.3	35	74	10	138	44	6	21	27	1.77
20964122--20964264	67	2.2	66	82	3	171	46	6	20	25	1.76
20964280--20964370	33	2.8	32	77	11	112	53	17	13	15	1.72
20964275--20964433	66	2.4	65	81	5	160	50	15	16	16	1.79
20965845--20965886	21	2.0	21	85	0	57	45	19	21	14	1.85
20970713--20970752	16	2.4	16	83	4	53	5	25	0	70	1.08
20970710--20970792	12	6.8	12	70	16	55	3	22	0	73	0.99
20970904--20970962	25	2.4	24	82	2	73	3	18	0	77	0.90
20970911--20970953	19	2.2	20	87	8	61	4	16	0	79	0.90
20971401--20971436	3	12.0	3	100	0	72	66	0	0	33	0.92
20978765--20978795	13	2.4	13	88	0	53	61	0	6	32	1.21
20984866--20984959	21	4.4	22	74	8	86	38	10	17	34	1.84
20984837--20984929	22	4.2	21	72	11	71	40	8	13	36	1.76
20984866--20984959	22	4.4	21	76	7	82	38	10	17	34	1.84
20985408--20985480	39	1.9	37	83	10	94	41	17	0	41	1.50
20992416--20992517	53	1.9	53	95	0	186	37	18	17	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20995945--20995996	19	2.6	20	75	6	52	57	0	7	34	1.27
20996733--20996771	9	4.3	9	100	0	78	58	0	0	41	0.98
20997274--20997311	20	1.9	20	88	0	58	34	2	7	55	1.43
21000374--21000403	2	15.0	2	100	0	60	50	0	0	50	1.00
21008848--21008919	35	2.1	35	94	0	126	50	15	23	11	1.76
21010930--21010990	28	2.2	28	82	5	70	22	26	18	32	1.97
21010941--21010999	28	2.1	28	93	0	100	20	25	13	40	1.89
21015028--21015066	18	2.2	18	86	4	53	25	25	2	46	1.66
21017347--21017397	12	4.5	11	83	11	50	29	0	0	70	0.87
21017360--21017391	6	5.5	6	92	7	57	31	0	0	68	0.90
21018497--21018892	172	2.3	171	92	1	650	40	9	13	36	1.78
21023086--21023125	21	2.0	20	90	5	62	67	2	17	12	1.33
21023113--21023193	8	10.1	8	72	15	60	79	0	17	3	0.88
21023116--21023164	25	2.0	25	88	8	73	75	0	18	6	1.00
21023160--21023211	23	2.3	22	80	6	59	80	0	15	3	0.85
21024458--21024506	16	2.7	19	78	15	59	32	0	6	61	1.21
21024446--21024567	57	2.1	57	78	15	128	29	0	6	63	1.19
21024502--21024546	18	2.6	18	82	10	58	24	0	8	66	1.20
21024449--21024567	31	4.0	30	70	16	79	29	0	6	63	1.19
21024467--21024642	63	2.8	61	78	14	146	27	2	4	64	1.27
21024956--21025009	25	2.2	24	83	6	63	35	5	18	40	1.74
21025018--21025084	31	2.2	31	83	0	80	29	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21025123--21025161	20	2.0	20	85	5	53	23	25	17	33	1.96
21025468--21025536	1	69.0	1	91	0	111	4	0	0	95	0.26
21025468--21025545	23	3.3	23	92	1	111	6	1	0	92	0.44
21025613--21026012	116	3.4	115	91	4	599	43	8	14	34	1.74
21025614--21026012	59	6.8	57	87	5	566	43	8	14	34	1.74
21026835--21026884	20	2.4	21	74	12	50	28	14	18	40	1.89
21026947--21026976	15	2.0	15	93	0	51	26	10	20	43	1.83
21027056--21027401	44	8.3	43	75	11	292	25	12	18	43	1.85
21027066--21027426	40	8.9	41	83	4	326	24	12	18	43	1.85
21027109--21027427	122	2.6	120	81	7	344	24	12	18	43	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131