genome.fa.s2.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  38  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8292112--8292168	30	1.9	30	85	3	80	7	15	0	77	0.98
8292137--8292175	19	2.1	18	90	4	60	5	15	0	79	0.90
8293306--8293347	11	3.9	11	84	15	61	11	7	0	80	0.88
8293309--8293347	20	1.9	21	94	5	71	10	7	0	82	0.86
8295031--8295074	20	2.2	20	83	0	52	43	6	27	22	1.78
8297270--8297320	26	2.0	26	84	7	68	68	3	3	23	1.23
8298576--8298614	8	4.8	8	83	3	51	33	0	0	66	0.92
8298576--8298616	3	14.7	3	85	14	61	34	0	0	65	0.93
8298576--8298614	16	2.4	17	86	4	62	33	0	0	66	0.92
8299256--8299289	12	2.8	12	100	0	68	44	0	0	55	0.99
8299296--8299347	21	2.5	21	90	9	81	50	0	0	50	1.00
8302578--8302630	3	17.7	3	100	0	106	33	0	0	66	0.92
8303077--8303123	21	2.2	21	88	7	69	42	6	14	36	1.72
8307516--8307559	4	11.0	4	95	0	79	47	0	27	25	1.52
8311065--8311099	3	11.7	3	87	0	52	31	5	0	62	1.18
8311777--8311816	16	2.4	16	87	8	53	40	0	0	60	0.97
8311780--8311837	15	3.8	16	72	19	52	44	0	0	55	0.99
8311799--8311857	22	2.3	27	78	21	74	47	0	0	52	1.00
8311805--8311857	22	2.5	22	93	6	92	49	0	0	50	1.00
8315080--8315135	3	18.7	3	100	0	112	33	0	0	66	0.92
8315926--8316077	58	2.6	58	89	4	236	36	13	7	42	1.74
8316252--8316416	6	27.0	6	72	20	94	76	3	1	18	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8316256--8316422	15	11.2	15	68	23	95	77	2	1	17	0.99
8316662--8316704	14	2.9	14	86	6	50	2	34	2	60	1.22
8316755--8316800	18	2.6	18	100	0	92	30	17	15	36	1.91
8317304--8317361	22	2.6	23	81	10	66	58	5	5	31	1.42
8317439--8317502	29	2.2	30	82	2	76	76	3	4	15	1.08
8317455--8317560	6	17.8	6	71	16	62	78	3	3	14	1.03
8317454--8317560	36	3.0	36	81	10	105	78	3	3	14	1.03
8317714--8317861	44	3.3	44	81	2	181	41	18	13	25	1.87
8317866--8317928	1	63.0	1	74	0	54	1	0	11	87	0.62
8317879--8317929	13	4.0	13	92	2	77	3	0	9	86	0.70
8317872--8317928	18	3.3	18	86	13	84	1	0	10	87	0.61
8317866--8317928	26	2.4	27	89	7	94	1	0	11	87	0.62
8317953--8318151	41	4.9	41	89	0	281	39	22	15	23	1.92
8319151--8319214	8	7.8	8	96	3	110	21	0	0	78	0.76
8327572--8327856	62	4.7	58	78	12	272	38	12	5	43	1.66
8327572--8327847	123	2.3	123	83	9	352	39	12	5	42	1.66
8327881--8327928	21	2.3	21	82	13	64	72	0	8	18	1.08
8327923--8327956	14	2.4	14	100	0	68	79	0	11	8	0.94
8327974--8328016	22	1.9	23	86	13	63	76	2	0	20	0.89
8328282--8328325	21	2.0	22	82	4	54	0	40	0	59	0.98
8329015--8329068	15	3.6	15	82	9	58	66	1	7	24	1.27
8329057--8329160	14	7.6	14	71	16	67	79	2	2	14	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8329057--8329165	26	4.0	27	69	16	82	79	2	3	13	0.97
8329363--8329403	21	2.0	21	95	0	73	36	2	17	43	1.62
8329787--8329868	42	2.0	42	80	9	96	23	4	3	68	1.25
8337460--8337527	7	10.0	7	76	17	63	77	0	20	1	0.84
8337460--8337527	13	5.0	13	82	10	75	77	0	20	1	0.84
8337838--8337891	12	4.9	11	78	12	58	83	3	5	7	0.91
8337822--8337891	18	3.9	19	69	14	58	80	2	8	8	1.01
8339077--8339752	64	10.6	64	73	3	259	23	21	12	43	1.86
8339108--8339476	128	2.9	129	78	4	379	23	21	11	42	1.86
8339456--8339731	128	2.2	127	82	3	340	23	19	12	44	1.84
8339456--8339790	128	2.6	127	78	6	327	23	20	11	44	1.84
8339975--8340002	14	2.0	14	100	0	56	28	7	0	64	1.20
8340263--8340321	3	19.7	3	96	0	109	32	0	1	66	1.02
8340773--8340811	20	2.0	20	89	0	60	38	2	20	38	1.66
8341178--8341225	9	5.2	9	76	14	53	22	4	0	72	1.01
8342304--8342355	19	2.8	17	80	13	50	21	0	1	76	0.87
8342368--8342432	15	4.1	15	73	11	58	29	3	4	63	1.30
8342463--8342532	27	2.7	26	80	10	72	31	2	2	62	1.24
8342542--8342615	23	3.3	22	76	12	78	18	6	1	72	1.13
8342956--8342995	19	2.1	19	90	4	62	30	10	15	45	1.78
8343481--8343611	16	8.2	16	68	25	64	20	3	3	72	1.14
8343548--8343612	5	12.4	5	78	15	69	18	4	0	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8343548--8343612	11	6.2	11	79	13	75	18	4	0	76	0.95
8343531--8343617	42	2.0	42	82	10	106	17	6	0	75	1.01
8343546--8343606	28	2.2	27	88	11	88	19	3	0	77	0.91
8343635--8343788	58	2.7	57	88	5	220	43	8	12	35	1.74
8355231--8355646	41	10.1	41	84	5	466	25	16	20	37	1.93
8355231--8355646	124	3.4	122	79	7	457	25	16	20	37	1.93
8355231--8355623	83	4.8	82	84	5	465	25	15	20	38	1.92
8355502--8355646	43	3.4	42	85	1	166	24	17	22	36	1.94
8355690--8355879	43	4.4	43	83	2	211	21	15	24	38	1.92
8356098--8356138	15	2.6	15	84	7	55	26	2	4	65	1.25
8356196--8356256	26	2.4	25	83	8	79	31	3	3	62	1.27
8356262--8356337	21	3.3	23	75	20	79	22	6	2	68	1.25
8356278--8356359	21	3.8	21	75	10	76	23	7	2	67	1.28
8356262--8356360	45	2.2	47	80	14	127	23	7	4	65	1.35
8357176--8357205	9	3.3	9	95	0	51	6	3	0	90	0.56
8357232--8357287	14	4.4	13	78	15	55	16	5	0	78	0.92
8357251--8357293	5	8.8	5	80	14	54	18	4	0	76	0.95
8357242--8357283	20	2.1	20	91	8	68	16	4	0	78	0.91
8357232--8357298	23	2.9	24	83	14	79	16	7	0	76	1.01
8357246--8357292	9	5.1	9	85	12	60	19	4	0	76	0.95
8357233--8357298	14	4.7	13	77	17	53	16	7	0	75	1.02
8357322--8357596	58	4.7	58	82	7	295	45	7	11	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8358703--8358738	11	3.3	11	92	0	63	27	0	27	44	1.55
8358759--8358915	52	3.0	52	80	0	188	40	7	22	28	1.82
8362064--8362126	16	3.9	16	71	22	51	53	4	0	41	1.22
8367288--8367353	28	2.3	29	82	10	82	56	0	3	40	1.15
8367294--8367352	27	2.3	26	78	16	68	54	0	3	42	1.17
8367852--8367956	55	1.9	56	84	5	142	62	1	0	35	1.06
8367917--8367952	17	2.1	18	90	10	58	63	0	0	36	0.94
8369092--8369128	2	18.5	2	100	0	74	51	0	0	48	1.00
8371751--8371788	20	2.0	20	89	5	60	50	0	2	47	1.15
8374313--8374357	20	2.2	19	84	11	54	80	4	6	8	1.03
8374326--8374378	26	2.0	26	82	7	63	79	7	9	3	1.05
8375958--8375999	3	14.0	3	100	0	84	66	0	0	33	0.92
8377395--8377726	118	2.8	118	88	2	486	36	12	7	43	1.71
8377397--8377726	59	5.5	59	82	6	380	36	12	7	43	1.71
8377815--8377881	17	4.0	16	77	9	71	76	2	7	13	1.12
8377803--8377894	5	17.6	5	71	14	62	76	2	5	16	1.08
8377813--8377873	22	2.8	21	82	9	68	78	3	4	13	1.03
8378423--8378471	25	2.0	25	84	8	64	57	14	2	26	1.48
8378729--8378771	9	4.8	9	85	0	59	69	6	2	20	1.23
8378894--8378988	6	15.0	6	72	18	61	76	2	3	17	1.01
8379160--8379367	41	5.0	40	86	6	238	37	23	16	23	1.94
8379341--8379392	25	2.1	25	100	0	104	34	23	15	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8379302--8379429	66	1.9	66	96	0	238	36	20	17	25	1.94
8379366--8379476	41	2.6	42	87	5	170	36	21	16	25	1.94
8380484--8380525	19	2.3	18	91	4	66	9	7	0	83	0.81
8390829--8391055	59	3.8	59	81	6	260	33	12	8	45	1.72
8390829--8391055	118	1.9	119	86	7	325	33	12	8	45	1.72
8391075--8391154	5	15.6	5	76	17	76	76	1	3	18	1.01
8391070--8391145	18	4.1	18	75	18	59	76	1	5	17	1.04
8391075--8391154	11	7.2	11	79	11	74	76	1	3	18	1.01
8391469--8391502	14	2.5	13	90	4	50	0	41	0	58	0.98
8391990--8392035	9	5.2	9	81	5	58	69	8	4	17	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131