genome.fa.s2.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  51  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10512579--10512632	26	2.1	26	100	0	108	31	22	16	29	1.96
10516045--10516075	11	2.8	11	90	0	53	54	6	16	22	1.64
10516595--10516647	26	2.0	26	88	0	79	30	37	13	18	1.89
10516615--10516736	56	2.2	55	81	7	131	26	31	13	28	1.94
10519315--10519470	52	3.0	51	85	3	213	25	23	8	42	1.83
10519497--10519536	11	3.6	11	86	0	62	50	25	0	25	1.50
10519769--10519824	25	2.2	25	81	6	69	19	35	10	33	1.87
10520357--10520512	52	3.0	52	86	7	219	25	25	8	40	1.84
10520523--10520578	22	2.6	22	83	8	62	48	21	3	26	1.66
10520539--10520578	11	3.6	11	89	0	62	50	25	0	25	1.50
10524081--10524254	86	2.0	86	100	0	348	39	22	8	29	1.83
10528999--10529055	16	3.5	16	76	4	60	47	0	0	52	1.00
10528999--10529055	8	7.0	8	80	4	51	47	0	0	52	1.00
10536291--10536320	8	3.8	8	95	0	51	83	0	10	6	0.81
10539699--10539807	13	8.2	13	73	11	62	78	3	11	5	1.04
10539729--10539804	23	3.4	22	78	7	80	81	5	9	3	0.96
10539763--10539797	16	2.1	16	94	5	61	88	5	5	0	0.63
10541992--10542131	33	4.3	33	76	4	106	35	15	15	33	1.90
10541992--10542131	64	2.2	65	77	3	149	35	15	15	33	1.90
10542164--10542250	32	2.8	31	82	1	111	29	20	16	33	1.94
10542832--10543059	85	2.7	85	78	5	210	33	15	13	37	1.87
10543121--10543265	50	2.9	50	85	0	200	33	11	19	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10543313--10543440	45	2.8	45	85	3	177	32	10	14	42	1.79
10543564--10543639	25	3.0	24	75	12	71	81	13	2	2	0.90
10543564--10543639	26	3.0	24	79	12	80	81	13	2	2	0.90
10543561--10543641	27	3.0	25	78	10	81	80	14	2	2	0.93
10546821--10546853	16	1.9	18	88	11	52	54	12	3	30	1.52
10549306--10549336	2	15.5	2	93	0	53	45	0	3	51	1.17
10550094--10550127	3	11.3	3	100	0	68	32	0	0	67	0.91
10550691--10550732	17	2.7	15	85	10	57	64	0	4	30	1.14
10553446--10553821	64	6.0	62	74	10	264	34	13	13	39	1.83
10553554--10553781	62	3.7	61	74	12	203	34	13	12	39	1.82
10553455--10553798	124	2.7	125	76	10	333	34	13	11	40	1.81
10553835--10554022	64	2.9	64	77	10	179	34	15	11	38	1.83
10554233--10554352	64	1.9	62	88	6	179	33	14	9	43	1.77
10553914--10554546	319	2.0	318	83	2	795	36	12	12	39	1.80
10556192--10556221	2	15.0	2	92	0	51	50	3	0	46	1.18
10556295--10556336	22	2.0	21	90	4	66	42	0	0	57	0.99
10557127--10557168	14	2.9	15	85	7	59	45	0	2	52	1.13
10560885--10560927	21	2.0	21	86	9	59	39	4	2	53	1.34
10562321--10562369	26	2.0	26	88	8	75	75	0	0	24	0.80
10569845--10570004	59	2.7	59	93	0	266	50	15	8	26	1.72
10580641--10580673	14	2.4	14	100	0	66	72	0	6	21	1.05
10585346--10585405	30	2.0	30	100	0	120	53	3	13	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10587372--10587421	25	2.0	25	81	11	59	38	10	2	50	1.48
10587539--10587571	15	2.1	16	94	5	59	18	0	12	69	1.18
10589567--10589602	13	2.8	12	88	12	54	25	2	19	52	1.59
10590027--10590072	24	1.9	24	86	0	65	21	2	6	69	1.22
10601883--10602052	50	3.4	49	75	7	153	29	12	14	43	1.82
10602130--10602354	44	5.2	44	82	5	262	30	14	12	42	1.83
10602130--10602354	85	2.6	85	85	1	288	30	14	12	42	1.83
10602802--10602835	15	2.3	15	95	5	61	58	14	8	17	1.61
10603559--10603614	9	6.0	9	76	13	51	21	1	3	73	1.08
10603563--10603608	24	1.9	24	82	8	58	23	2	4	69	1.17
10603682--10603722	3	13.7	3	89	0	64	29	4	0	65	1.13
10608086--10608173	36	2.4	36	83	10	92	31	15	14	37	1.89
10608209--10608260	18	2.9	18	78	13	63	32	11	17	38	1.85
10608556--10608592	18	2.1	18	90	5	58	27	10	10	51	1.70
10611461--10611547	28	3.2	28	77	22	80	24	3	0	72	1.00
10611610--10611695	20	4.3	20	85	7	104	34	3	9	52	1.51
10611618--10611707	40	2.2	41	83	11	114	37	4	8	48	1.55
10612565--10612662	12	7.8	12	75	13	90	48	24	8	18	1.75
10612565--10612662	25	3.9	24	75	13	90	48	24	8	18	1.75
10619571--10619613	23	1.9	22	85	4	59	44	13	6	34	1.72
10624579--10624619	2	20.5	2	100	0	82	51	0	48	0	1.00
10626313--10626348	17	2.1	17	90	10	56	72	2	5	19	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10627659--10627715	3	19.0	3	100	0	114	33	0	0	66	0.92
10628484--10628526	20	2.2	19	91	4	68	34	25	13	25	1.93
10631222--10631301	40	2.0	40	100	0	160	35	10	7	47	1.65
10631416--10631456	21	1.9	21	90	5	64	53	0	4	41	1.22
10632325--10632370	17	2.7	18	71	25	53	52	4	0	43	1.21
10632266--10632506	131	1.9	128	89	2	374	42	10	5	41	1.63
10634012--10634511	247	2.0	247	96	0	919	37	14	16	32	1.88
10640129--10640157	13	2.1	14	93	6	51	68	0	3	27	1.05
10642530--10642843	64	4.9	63	79	6	276	43	13	7	35	1.71
10643173--10643310	61	2.3	61	83	7	165	43	20	4	31	1.71
10643436--10643490	25	2.2	25	77	6	58	69	0	3	27	1.05
10649287--10649318	11	2.9	11	90	0	55	0	12	0	87	0.54
10651573--10651619	20	2.4	18	86	13	67	78	12	2	6	1.02
10655402--10655448	15	3.1	16	81	9	62	80	0	10	8	0.89
10656756--10656784	11	2.6	11	100	0	58	89	0	10	0	0.48
10656945--10657047	42	2.4	43	83	1	136	29	9	22	38	1.86
10657186--10657500	167	1.9	166	84	2	416	24	12	20	42	1.86
10657455--10657740	99	2.9	99	82	1	322	24	14	21	39	1.91
10660518--10660563	22	2.1	22	95	0	83	60	10	4	23	1.47
10664827--10664860	11	3.1	11	84	16	52	47	0	2	50	1.16
10667720--10667763	22	2.0	22	95	0	79	43	13	11	31	1.80
10671415--10671472	25	2.4	25	85	5	75	41	17	27	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10671622--10671665	22	2.0	22	95	0	79	43	13	11	31	1.80
10671722--10671759	2	19.0	2	91	0	58	52	0	2	44	1.14
10672220--10672265	2	23.0	2	84	0	56	56	0	2	41	1.11
10672220--10672260	18	2.3	18	91	0	64	58	0	2	39	1.11
10672575--10672607	4	8.2	4	100	0	66	51	0	24	24	1.48
10677506--10677534	11	2.6	11	100	0	58	20	0	27	51	1.47
10677561--10677717	52	3.0	52	86	1	208	40	8	25	26	1.83
10688917--10688985	17	4.0	17	77	7	68	36	1	2	59	1.21
10690498--10690826	106	3.1	106	81	2	306	40	10	8	40	1.70
10690498--10690973	105	4.5	106	79	4	392	38	11	9	40	1.74
10694856--10694900	14	3.3	13	84	9	54	55	22	2	20	1.54
10695452--10695487	17	2.1	17	89	0	54	52	8	16	22	1.70
10700722--10700888	84	2.0	83	95	1	298	38	6	27	27	1.81
10705008--10705133	66	1.9	67	85	1	173	23	18	11	47	1.80
10705033--10705158	67	1.9	66	82	8	157	21	18	13	46	1.83
10705041--10705179	67	2.1	67	80	10	151	21	18	14	45	1.85
10706392--10706444	3	17.7	3	100	0	106	32	0	0	67	0.91
10708127--10708193	30	2.2	30	83	0	80	19	25	13	41	1.88
10709994--10710099	56	1.9	56	88	0	158	56	17	7	17	1.64
10711242--10711298	30	1.9	30	85	0	78	26	12	26	35	1.92
10716737--10716767	16	1.9	16	100	0	62	41	19	0	38	1.51
10726015--10726432	62	6.8	61	85	8	539	33	12	7	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10726015--10726422	187	2.2	178	88	8	581	33	13	7	45	1.71
10726573--10726599	5	5.4	5	100	0	54	0	40	40	18	1.51
10726922--10726982	31	2.0	31	86	0	86	27	24	19	27	1.99
10727442--10727500	8	6.7	9	77	14	52	69	3	0	27	1.04
10727471--10727512	9	4.7	9	88	5	50	69	7	0	23	1.13
10727675--10727749	1	75.0	1	81	0	78	0	0	10	89	0.49
10727678--10727748	8	8.9	8	86	10	101	0	0	11	88	0.51
10727667--10727749	19	4.3	19	80	15	98	0	0	12	87	0.53
10727756--10728406	40	16.0	39	89	6	926	37	21	18	22	1.94
10727756--10728406	81	8.0	81	93	4	1030	37	21	18	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131