genome.fa.s2.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  32  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7423671--7423916	41	5.9	41	74	8	185	46	15	12	25	1.81
7424405--7424489	22	3.8	22	70	13	66	42	12	8	36	1.73
7424509--7424807	46	6.4	48	79	9	187	35	12	10	42	1.77
7424562--7424608	14	3.6	13	75	18	53	31	10	12	44	1.77
7424539--7424910	46	8.1	43	79	9	246	36	12	9	40	1.77
7424632--7424672	14	3.1	14	80	20	61	39	9	7	43	1.65
7424537--7424789	71	3.6	71	80	11	256	34	11	10	43	1.76
7424499--7424878	117	3.3	117	85	5	479	35	12	10	41	1.77
7424732--7424831	21	4.6	21	83	9	101	37	13	9	41	1.75
7424657--7424877	67	3.2	67	82	3	210	36	13	9	40	1.78
7424531--7424877	25	15.0	24	76	12	268	35	12	10	41	1.76
7426165--7426237	37	1.9	37	86	2	101	4	13	0	82	0.81
7426157--7426238	9	8.5	10	73	10	64	3	14	0	81	0.82
7426166--7426237	18	3.9	18	81	13	85	4	13	0	81	0.82
7426157--7426238	19	4.3	19	81	6	94	3	14	0	81	0.82
7426604--7426641	7	5.4	7	81	12	51	0	13	0	86	0.56
7426603--7426637	11	3.2	11	91	0	61	0	11	0	88	0.51
7426603--7426643	17	2.6	16	88	11	59	0	14	0	85	0.60
7428991--7429194	110	1.8	111	89	2	320	47	7	17	27	1.74
7431714--7431749	16	2.2	16	95	0	63	25	0	0	75	0.81
7431717--7431749	8	4.2	8	84	7	50	21	0	0	78	0.75
7434744--7434786	22	2.0	22	86	9	61	30	2	4	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7438317--7438394	33	2.4	33	80	4	86	38	6	3	51	1.46
7439814--7439839	6	4.3	6	100	0	52	84	15	0	0	0.62
7443873--7443977	53	2.0	53	84	0	138	31	11	12	44	1.77
7464828--7464870	2	21.5	2	100	0	86	0	48	0	51	1.00
7471778--7471836	16	3.5	16	81	9	55	81	0	11	6	0.87
7471778--7471829	25	2.1	25	85	0	68	82	0	9	7	0.84
7473298--7473398	21	4.6	22	75	10	82	38	5	8	46	1.60
7473330--7473377	24	2.1	22	84	7	60	33	6	10	50	1.62
7473509--7473550	21	2.0	21	90	0	66	35	7	11	45	1.69
7473799--7473922	18	6.9	18	72	9	83	26	18	9	45	1.80
7473777--7473872	18	5.4	18	77	7	79	25	18	8	47	1.76
7473777--7473880	35	2.9	36	81	2	120	25	19	7	47	1.76
7474507--7474553	25	1.9	24	83	12	60	44	2	4	48	1.34
7475601--7475640	22	1.9	22	85	10	57	42	7	0	50	1.30
7476837--7476862	5	5.2	5	100	0	52	76	0	0	23	0.78
7479043--7479094	26	2.0	27	81	11	63	65	0	5	28	1.16
7482318--7482357	21	1.9	21	85	10	55	50	7	22	20	1.73
7482616--7482643	2	14.0	2	100	0	56	50	0	0	50	1.00
7482900--7482925	1	26.0	1	100	0	52	100	0	0	0	0.00
7485200--7485264	25	2.4	28	72	7	64	53	0	3	43	1.16
7488210--7488285	30	2.5	30	85	4	100	36	1	3	57	1.25
7488320--7488373	10	5.4	10	79	12	58	37	1	7	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7488319--7488357	21	1.9	20	94	5	69	43	0	10	46	1.37
7488362--7488394	16	2.0	17	88	5	50	24	3	0	72	0.98
7491143--7491351	104	2.0	104	99	0	409	38	18	13	29	1.89
7494108--7494146	3	13.0	3	94	0	69	33	2	0	64	1.08
7494680--7494709	11	2.7	11	89	0	51	23	0	13	63	1.29
7502013--7502055	12	3.5	12	78	6	50	6	11	0	81	0.87
7512454--7512739	58	4.9	58	86	5	405	37	12	6	43	1.70
7512448--7512759	119	2.7	117	87	3	447	38	11	7	42	1.70
7512569--7512670	29	3.5	27	69	22	64	39	13	6	40	1.72
7512755--7512793	5	7.8	5	88	11	62	82	0	0	17	0.68
7512756--7512792	9	4.3	9	80	13	51	81	0	0	18	0.70
7512755--7512793	11	3.9	10	87	12	62	82	0	0	17	0.68
7513633--7513746	3	33.7	3	72	18	50	61	1	6	30	1.30
7513625--7513750	21	6.1	21	71	14	102	61	1	6	30	1.30
7513625--7513754	10	12.7	10	71	16	81	62	1	6	30	1.29
7513625--7513747	35	3.7	32	76	17	94	61	1	6	30	1.30
7513659--7513751	37	2.6	37	75	13	95	62	1	6	30	1.27
7513749--7513794	7	6.9	7	85	9	53	78	6	0	15	0.95
7513749--7513797	14	3.6	14	84	15	68	79	6	0	14	0.91
7513731--7513802	34	2.1	35	84	7	94	77	5	0	16	0.94
7514880--7514947	22	3.0	22	82	6	84	39	0	2	57	1.14
7515055--7515104	22	2.3	22	86	3	66	32	2	2	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7515071--7515119	19	2.6	18	75	9	53	42	2	0	55	1.11
7515129--7515156	14	2.0	14	100	0	56	50	7	0	42	1.30
7519001--7519044	22	2.0	22	91	8	72	43	13	9	34	1.76
7523068--7523127	31	1.9	31	93	0	102	36	13	18	31	1.89
7529383--7529421	14	2.8	14	100	0	78	51	20	7	20	1.72
7531321--7531349	1	29.0	1	100	0	58	0	0	100	0	0.00
7534246--7534299	28	1.9	28	100	0	108	25	9	20	44	1.81
7534523--7534566	22	2.0	22	95	0	79	43	13	11	31	1.80
7537453--7537568	60	1.9	59	81	11	137	37	6	6	50	1.54
7539652--7539709	28	2.0	29	86	3	82	34	12	6	46	1.68
7541926--7541973	4	12.0	4	82	8	53	70	8	0	20	1.12
7541930--7541973	16	2.8	16	85	0	61	70	9	0	20	1.14
7541925--7541972	16	3.0	16	81	0	60	70	10	0	18	1.15
7542668--7542753	38	2.3	39	87	6	140	27	4	13	53	1.60
7542791--7542854	4	15.8	4	77	9	58	71	7	1	18	1.18
7542964--7543009	4	12.0	4	81	9	60	73	2	2	21	1.04
7542966--7543009	22	2.0	22	90	0	70	75	2	2	20	1.03
7542970--7543004	18	1.9	18	94	0	61	77	2	0	20	0.90
7545135--7545179	24	1.9	23	86	4	63	77	0	13	8	0.98
7545130--7545189	27	2.2	27	77	14	70	76	0	16	6	0.99
7545865--7545912	14	3.3	15	82	8	55	54	0	0	45	0.99
7556776--7556839	14	4.1	15	78	15	53	18	3	1	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7556777--7556857	38	2.1	39	82	15	98	16	3	2	77	1.01
7556925--7557007	32	2.4	34	82	7	89	72	3	2	21	1.12
7557816--7557943	5	25.4	5	74	13	102	55	3	4	35	1.39
7557815--7558010	8	22.9	8	69	22	73	53	3	7	35	1.45
7557816--7557972	30	5.3	29	73	11	115	53	3	7	36	1.44
7559439--7559463	9	2.8	9	100	0	50	8	8	0	84	0.79
7564064--7564109	20	2.2	21	85	11	60	13	2	4	80	0.95
7564048--7564119	37	1.9	37	83	5	92	13	5	4	76	1.12
7564172--7564203	17	1.9	17	93	6	57	68	6	3	21	1.26
7564202--7564298	19	5.2	19	79	17	96	74	2	6	17	1.12
7564168--7564273	13	8.1	12	72	15	61	72	2	5	18	1.17
7564228--7564297	13	5.8	12	72	12	54	75	2	2	18	1.05
7564168--7564273	6	16.2	6	70	18	61	72	2	5	18	1.17
7565084--7565108	13	1.9	13	100	0	50	80	0	0	20	0.72
7565116--7565272	5	30.6	5	73	13	88	51	3	8	36	1.50
7565084--7565126	19	2.3	19	84	8	52	76	0	0	23	0.78
7565166--7565244	21	3.9	21	77	9	65	50	5	7	36	1.53
7565180--7565214	16	2.3	15	90	5	52	48	8	2	40	1.49
7565190--7565310	8	15.0	8	65	20	56	55	4	5	34	1.43
7567093--7567198	37	2.9	36	74	2	104	26	16	16	41	1.88
7567457--7567704	114	2.2	114	80	2	275	30	11	14	43	1.80
7567467--7567604	74	1.9	74	81	3	170	28	13	14	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7567571--7567654	40	2.1	41	81	2	98	32	10	13	44	1.78
7570149--7570173	10	2.5	10	100	0	50	44	0	0	56	0.99
7572940--7572990	27	1.9	26	84	11	68	47	7	3	41	1.51
7573162--7573195	16	2.1	17	88	5	52	67	8	2	20	1.31
7573384--7573408	7	3.6	7	100	0	50	40	0	0	60	0.97
7573557--7573587	10	3.2	10	90	9	55	61	0	0	38	0.96
7574263--7574308	24	1.9	24	90	0	74	23	21	15	39	1.92
7578731--7578980	80	3.1	80	85	6	353	43	23	9	23	1.82
7581118--7581383	58	4.7	56	72	18	223	46	6	13	33	1.68
7581235--7581396	60	2.7	58	73	11	134	45	5	16	32	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131