genome.fa.s2.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  56  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11508832--11509094	131	2.0	130	93	0	445	31	11	14	43	1.80
11513097--11513136	21	2.0	20	85	14	55	47	2	0	50	1.14
11513125--11513204	41	2.0	41	87	9	119	48	1	0	50	1.08
11513127--11513205	21	3.8	20	83	11	106	48	1	0	50	1.08
11513220--11513336	21	5.6	21	74	9	78	52	6	1	39	1.38
11513370--11513409	18	2.3	17	82	4	53	40	5	0	55	1.22
11513478--11513561	11	7.8	11	70	15	59	41	2	2	53	1.27
11513478--11513530	24	2.3	22	87	12	72	45	0	1	52	1.11
11513619--11513704	29	3.0	28	74	14	79	38	1	3	56	1.24
11513864--11513948	41	2.0	42	86	4	118	38	2	2	56	1.25
11513871--11513937	10	6.5	10	71	11	55	37	2	1	58	1.23
11513875--11513952	41	1.9	41	89	5	122	37	2	1	58	1.20
11513887--11513957	18	3.6	19	73	17	65	39	2	0	57	1.13
11514830--11514918	12	7.8	12	72	14	64	74	1	4	20	1.06
11514830--11514923	32	2.9	30	75	18	91	74	1	4	20	1.05
11514850--11514933	42	1.9	44	85	9	118	72	0	5	21	1.05
11514830--11514934	11	9.6	11	68	16	58	74	0	4	20	1.06
11514850--11514938	45	2.0	45	82	12	112	70	0	6	22	1.10
11516933--11517058	21	6.3	21	72	16	90	45	30	6	17	1.73
11516939--11517038	42	2.3	41	81	8	119	44	32	5	19	1.72
11517007--11517040	16	2.1	16	100	0	68	41	32	5	20	1.76
11525165--11525210	24	1.9	24	86	0	65	19	15	28	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11530916--11530963	24	2.0	23	88	11	71	10	10	0	79	0.95
11532885--11532943	30	2.0	30	100	0	118	40	10	6	42	1.65
11533221--11533268	6	7.8	6	82	13	62	18	0	4	77	0.93
11533223--11533271	25	2.0	24	92	4	80	18	0	6	75	1.00
11534191--11534225	18	1.9	18	88	0	52	60	8	8	22	1.54
11535552--11535637	44	2.0	44	83	0	109	26	10	8	54	1.62
11535856--11535914	31	1.9	30	89	3	91	49	1	3	45	1.28
11537995--11538045	22	2.3	22	80	6	59	58	0	0	41	0.98
11538034--11538082	22	2.1	24	85	7	66	48	2	0	48	1.12
11538402--11538444	20	2.2	20	86	0	59	46	16	9	27	1.77
11544627--11544687	27	2.1	28	85	11	79	57	0	36	6	1.25
11544740--11544781	9	4.7	9	91	8	68	73	0	26	0	0.83
11544741--11544781	14	3.0	14	79	17	50	75	0	24	0	0.80
11544741--11544823	26	3.2	24	77	11	85	71	1	22	4	1.12
11546657--11546702	25	1.9	23	86	8	65	19	2	10	67	1.31
11549446--11549513	26	2.6	26	81	6	75	67	5	11	14	1.39
11549852--11549904	28	1.9	27	84	3	70	83	3	9	3	0.90
11551260--11551293	17	2.0	17	88	0	50	44	0	14	41	1.45
11551867--11551911	5	9.0	5	83	9	56	82	0	13	4	0.82
11552075--11552134	19	3.1	19	82	4	75	48	3	30	18	1.64
11553892--11553931	19	2.1	19	90	0	62	85	10	2	2	0.80
11555146--11555194	14	3.6	14	78	10	50	75	0	22	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11555147--11555199	12	4.2	12	79	11	54	73	0	24	1	0.93
11555245--11555296	17	2.8	18	80	14	52	75	1	23	0	0.91
11555374--11555410	10	3.4	11	85	14	58	89	0	10	0	0.49
11555372--11555404	12	2.7	13	86	13	52	87	0	12	0	0.53
11557484--11557513	15	2.0	15	93	0	51	56	6	6	30	1.51
11569342--11569725	143	2.7	143	77	5	407	34	12	13	39	1.82
11570079--11570113	18	1.9	18	88	0	52	77	0	11	11	1.00
11570543--11570582	20	2.0	20	85	5	53	45	35	0	20	1.51
11570553--11570635	20	4.2	20	71	10	64	49	34	0	15	1.45
11570586--11570640	26	2.1	26	86	0	74	50	29	0	20	1.48
11570611--11570659	19	2.6	18	83	6	62	51	28	0	20	1.48
11570586--11570702	44	2.6	44	84	9	148	48	30	0	19	1.55
11570630--11570678	25	1.9	26	87	4	73	46	32	0	20	1.51
11570629--11570684	25	2.2	26	80	3	69	46	28	0	25	1.53
11570695--11570763	6	11.3	6	71	9	50	43	37	0	18	1.51
11570695--11570764	13	5.7	13	73	8	58	44	37	0	18	1.50
11570707--11570815	38	2.9	38	77	10	107	45	31	1	21	1.62
11570734--11570815	19	4.2	20	71	6	62	47	29	2	20	1.63
11570818--11570859	18	2.3	18	87	4	57	42	14	7	35	1.73
11575402--11575443	18	2.3	18	100	0	84	21	4	11	61	1.48
11576790--11576860	10	7.2	10	80	13	76	78	0	12	8	0.95
11576785--11576846	29	2.1	29	93	0	106	79	0	9	11	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11576801--11576840	19	2.2	19	95	4	73	77	0	12	10	0.99
11576801--11576873	20	3.6	20	78	8	67	75	0	19	5	0.99
11576791--11576860	29	2.4	29	90	2	104	78	0	12	8	0.96
11576828--11576879	12	4.2	12	78	9	50	75	0	23	1	0.91
11578778--11578944	34	4.9	35	78	2	108	28	12	13	44	1.81
11578929--11578989	18	3.4	18	77	8	63	34	13	9	42	1.77
11579299--11579405	42	2.5	42	73	0	115	30	16	16	35	1.92
11580257--11580332	34	2.2	35	83	9	102	15	11	15	56	1.67
11580383--11580523	70	2.0	70	83	4	178	16	14	15	53	1.73
11580383--11580484	35	3.0	34	76	1	105	15	14	15	53	1.73
11580575--11580664	35	2.5	35	75	5	92	17	15	14	52	1.75
11582923--11583072	20	7.3	20	69	13	72	50	34	4	12	1.58
11583485--11583543	9	6.6	9	88	0	55	64	25	3	6	1.34
11583490--11583537	3	16.0	3	91	0	78	64	31	2	2	1.16
11585002--11585030	3	9.7	3	100	0	58	65	0	0	34	0.93
11585087--11585157	15	4.6	15	73	18	65	81	4	14	0	0.83
11585306--11585330	10	2.5	10	100	0	50	44	20	8	28	1.79
11585530--11585986	143	3.2	142	75	8	412	31	13	14	40	1.85
11587402--11587709	7	46.7	7	64	17	79	47	32	2	17	1.61
11587369--11587419	27	1.9	26	88	11	77	52	39	0	7	1.30
11587400--11587457	20	2.9	19	73	12	53	51	34	1	12	1.49
11587423--11587548	26	4.8	26	78	7	114	47	30	2	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11587455--11587610	20	7.9	20	73	11	83	48	29	2	19	1.63
11587515--11587560	19	2.5	18	89	6	74	47	30	4	17	1.67
11593757--11594163	144	2.8	143	81	4	471	29	15	14	40	1.86
11599653--11599700	25	1.9	25	86	0	69	18	31	8	41	1.80
11602083--11602680	36	16.8	36	67	6	153	15	16	15	52	1.75
11602385--11602859	35	13.4	35	68	9	194	17	18	13	50	1.78
11602385--11602643	71	3.7	71	74	4	218	16	16	14	51	1.76
11602593--11602752	71	2.3	71	83	3	205	18	20	13	48	1.80
11602618--11602735	36	3.3	35	71	11	114	17	22	15	44	1.86
11602809--11602966	36	4.4	37	70	9	112	16	18	12	52	1.74
11603010--11603107	19	4.9	19	72	17	83	84	9	2	4	0.82
11603010--11603098	27	3.2	28	75	10	78	85	10	1	3	0.77
11603005--11603107	18	5.7	18	79	5	109	84	8	1	4	0.84
11603005--11603098	1	94.0	1	73	0	62	85	9	1	4	0.79
11603555--11603954	146	2.7	144	83	6	484	28	13	15	42	1.85
11611952--11611989	18	2.2	18	85	4	51	68	7	23	0	1.16
11613718--11613785	25	2.7	26	93	2	111	48	22	8	20	1.77
11614132--11614167	16	2.3	16	90	4	56	25	11	8	55	1.62
11615427--11615507	30	2.8	29	85	9	94	16	0	11	72	1.11
11620988--11621056	30	2.2	32	92	7	115	63	4	7	24	1.38
11620996--11621063	32	2.2	30	86	7	91	63	4	7	25	1.39
11621238--11621277	14	2.7	15	84	7	64	55	17	7	20	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11621247--11621284	14	2.7	14	91	0	58	52	23	5	18	1.65
11621301--11621341	12	3.2	12	83	12	55	51	19	9	19	1.74
11621224--11621341	26	4.4	26	72	9	94	50	19	8	22	1.74
11621246--11621364	52	2.2	53	81	12	138	50	22	6	20	1.71
11627667--11627792	62	2.0	63	87	1	182	22	15	6	55	1.63
11633606--11634040	51	8.5	50	77	8	376	32	11	17	38	1.86
11633606--11634035	153	2.8	155	84	4	442	31	11	17	38	1.86
11633990--11634081	43	2.2	43	94	2	159	36	6	15	41	1.73
11634083--11634199	49	2.3	50	81	5	121	39	11	11	36	1.79
11634577--11635171	144	4.1	143	79	7	512	32	14	14	38	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131