genome.fa.s2.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  89  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16164018--16164042	13	1.9	13	100	0	50	32	4	0	64	1.12
16166700--16166726	13	2.1	13	100	0	54	29	25	0	44	1.54
16166768--16166800	17	1.9	17	100	0	66	12	15	0	72	1.12
16166911--16166968	20	2.9	20	89	5	82	34	0	1	63	1.04
16166925--16166971	13	3.5	13	80	8	51	36	0	0	63	0.94
16170129--16170269	36	3.8	36	72	11	142	27	10	25	36	1.89
16170198--16170245	24	2.0	24	91	0	78	29	12	33	25	1.92
16170321--16170384	21	3.0	21	95	0	110	45	6	21	26	1.76
16170321--16170401	21	3.9	21	93	0	108	46	6	20	25	1.74
16170295--16170512	111	2.0	111	83	3	278	41	6	19	32	1.78
16170398--16170490	42	2.2	43	90	3	145	40	6	18	34	1.76
16170476--16170657	21	8.8	21	76	6	138	44	9	19	26	1.81
16170474--16170657	42	4.4	42	73	5	176	44	9	19	26	1.81
16170402--16170737	42	7.9	42	70	10	144	40	8	18	32	1.81
16170661--16170813	36	4.1	36	82	5	135	32	8	21	37	1.84
16171834--16171919	45	1.9	45	87	0	127	19	33	20	25	1.97
16175476--16175555	32	2.5	31	81	4	88	36	13	11	38	1.81
16175474--16175563	16	5.6	17	69	11	64	37	14	11	36	1.82
16175994--16176093	24	4.4	23	69	14	73	38	17	5	40	1.71
16177226--16177292	17	4.0	17	78	18	68	16	10	1	71	1.20
16181835--16181874	4	10.0	4	84	10	55	72	2	2	22	1.09
16183186--16183210	9	2.8	9	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16183574--16183665	47	2.0	47	82	4	114	21	20	23	33	1.97
16194456--16194557	45	2.3	45	82	0	123	29	28	15	26	1.96
16205267--16205369	45	2.3	46	79	3	111	25	21	31	22	1.98
16206144--16206247	45	2.3	45	98	0	199	35	20	23	21	1.96
16206144--16206268	45	2.8	45	90	2	153	36	20	22	21	1.96
16211999--16212049	22	2.3	22	77	12	52	35	11	19	33	1.88
16217465--16217559	47	2.0	47	85	4	129	33	29	21	15	1.94
16219326--16219367	4	10.2	4	82	10	50	23	2	2	71	1.10
16219450--16219488	20	2.0	21	85	10	55	51	0	7	41	1.31
16225727--16225773	18	2.6	18	83	12	69	42	8	12	36	1.74
16226955--16227090	73	1.9	73	80	0	164	36	13	19	29	1.91
16227470--16227525	4	14.2	4	82	17	73	23	0	3	73	0.99
16227471--16227524	20	2.8	20	97	2	101	20	0	3	75	0.95
16227727--16227751	13	1.9	13	100	0	50	40	16	16	28	1.89
16227802--16227835	7	5.0	7	85	7	52	70	2	0	26	1.01
16237463--16237506	23	2.0	23	90	4	72	34	31	20	13	1.92
16241514--16241619	47	2.3	47	78	6	117	35	29	19	15	1.92
16257025--16257132	17	6.5	15	81	17	92	68	0	16	14	1.21
16257027--16257107	9	9.4	9	81	12	82	71	0	14	13	1.14
16257025--16257132	34	3.2	32	76	14	110	68	0	16	14	1.21
16258416--16258515	45	2.3	43	81	6	110	34	12	20	34	1.89
16258440--16258547	44	2.4	43	83	4	117	35	10	17	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16258765--16258832	31	2.2	32	83	2	84	39	13	8	38	1.75
16260609--16260638	4	7.2	4	92	7	51	26	0	3	70	1.03
16260609--16260638	13	2.4	12	89	10	51	26	0	3	70	1.03
16260609--16260646	17	2.2	17	90	0	58	26	2	2	68	1.16
16273210--16273249	17	2.4	17	100	0	80	30	22	25	22	1.99
16275721--16275777	25	2.3	25	84	0	69	24	29	24	21	1.99
16276727--16276816	47	1.9	47	88	0	135	33	28	21	16	1.95
16286172--16286198	11	2.5	11	100	0	54	18	25	29	25	1.98
16297058--16297100	19	2.3	19	95	0	77	16	27	18	37	1.92
16304643--16304737	46	2.1	46	86	4	129	24	18	21	35	1.95
16307878--16307927	17	2.9	17	93	0	91	40	34	12	14	1.82
16308007--16308115	45	2.4	45	77	6	112	22	28	24	24	1.99
16310300--16310333	14	2.4	14	95	0	59	32	0	2	64	1.08
16310864--16310969	13	8.0	13	78	8	106	24	9	20	45	1.81
16317488--16317522	17	2.0	18	88	5	54	20	8	5	65	1.40
16318895--16319559	177	3.7	176	75	8	531	41	8	9	40	1.68
16320343--16320387	22	2.0	22	83	8	56	48	2	2	46	1.26
16320931--16321423	183	2.7	180	83	3	576	40	8	10	40	1.70
16321665--16321698	16	2.3	15	90	10	52	52	8	0	38	1.33
16321717--16321760	23	1.9	23	86	9	63	50	0	0	50	1.00
16322491--16322534	20	2.3	19	81	14	54	47	2	2	47	1.27
16322673--16322763	15	6.1	16	71	17	54	36	2	3	58	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16323349--16323396	8	6.8	8	76	23	54	52	0	0	47	1.00
16323338--16323381	22	2.0	22	82	8	54	56	2	0	40	1.11
16323349--16323396	14	3.4	16	73	26	54	52	0	0	47	1.00
16323344--16323396	20	2.5	22	81	9	65	54	0	0	45	0.99
16323413--16323502	39	2.2	42	82	5	105	44	3	1	51	1.25
16323977--16324025	18	2.7	18	77	3	62	55	0	2	42	1.11
16324119--16324168	14	3.8	14	76	12	52	50	0	0	50	1.00
16324126--16324189	28	2.2	28	81	13	69	46	1	0	51	1.10
16324560--16324612	18	2.8	19	82	17	67	45	0	0	54	0.99
16324514--16324627	18	5.8	18	69	21	52	47	0	1	50	1.17
16324740--16324794	17	3.2	17	76	19	53	45	0	0	54	0.99
16324811--16324855	19	2.4	19	85	7	56	40	2	2	55	1.24
16324915--16324946	16	1.9	17	93	6	57	46	3	0	50	1.17
16325125--16325180	13	4.4	12	74	17	51	48	1	1	48	1.22
16326034--16326072	20	2.0	20	85	10	53	48	0	0	51	1.00
16326166--16326258	23	3.9	25	72	19	76	48	2	1	48	1.20
16326672--16326705	9	3.8	9	88	0	50	41	0	0	58	0.98
16327063--16327126	33	1.9	33	84	12	87	48	0	3	48	1.17
16327267--16327331	28	2.2	29	86	5	87	50	3	3	43	1.33
16327348--16327456	30	3.5	30	75	19	100	45	2	0	51	1.15
16327459--16327508	18	2.7	19	79	14	61	62	0	0	38	0.96
16327461--16327554	24	3.7	26	72	21	74	56	0	1	42	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16327516--16327615	21	4.8	21	67	25	61	45	1	2	52	1.19
16327594--16327622	15	1.9	15	100	0	58	34	0	3	62	1.12
16328253--16328295	12	3.5	13	84	15	56	53	0	0	46	1.00
16328945--16328986	11	3.8	11	83	0	57	42	2	2	52	1.27
16329462--16329536	29	2.5	30	76	20	77	44	1	2	52	1.23
16329959--16330006	18	2.7	18	78	15	55	54	0	0	45	0.99
16330180--16330236	24	2.8	19	73	26	55	52	1	0	45	1.11
16330180--16330237	13	4.2	13	76	20	64	51	1	0	46	1.11
16330175--16330264	37	2.4	38	82	12	107	50	2	2	45	1.26
16330358--16330414	28	2.0	30	89	6	91	64	3	0	31	1.10
16330365--16330414	14	3.5	14	78	10	57	64	4	0	32	1.12
16330424--16330462	18	2.1	19	85	4	53	61	2	0	35	1.10
16330437--16330540	35	3.0	34	77	17	99	55	0	1	41	1.17
16330340--16330530	75	2.6	75	86	8	245	54	3	1	40	1.25
16330449--16330552	26	4.2	25	72	25	80	53	0	1	43	1.18
16330777--16330819	20	2.2	20	87	8	61	44	2	0	53	1.13
16331696--16331751	27	2.2	25	83	6	67	55	1	0	42	1.10
16331711--16331769	12	5.0	12	73	15	52	52	0	0	47	1.00
16331703--16331762	24	2.6	25	77	12	67	55	0	0	45	0.99
16332042--16332119	14	5.8	14	67	24	51	51	3	0	44	1.19
16332171--16332216	18	2.6	18	100	0	92	54	0	0	45	0.99
16332175--16332225	18	3.1	15	86	11	57	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16332233--16332321	18	4.5	19	76	15	83	49	1	0	49	1.08
16332252--16332318	21	3.0	25	69	26	67	50	0	0	49	1.00
16332138--16332321	62	3.0	60	79	12	198	50	2	0	47	1.17
16332257--16332344	15	5.4	16	71	19	51	50	0	0	50	1.00
16332329--16332375	17	2.6	17	75	18	51	48	4	0	46	1.21
16333856--16333885	14	2.1	14	93	0	51	53	0	0	46	1.00
16334080--16334214	18	7.5	18	66	25	56	53	2	1	42	1.25
16334169--16334230	21	2.8	22	73	21	58	56	1	0	41	1.09
16334172--16334216	23	1.9	24	86	13	67	60	2	0	37	1.09
16334219--16334256	19	2.0	19	85	10	51	39	5	0	55	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131