genome.fa.s2.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  78  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14399787--14399837	26	2.0	26	100	0	102	29	15	27	27	1.96
14400651--14400703	26	2.0	26	92	0	88	26	20	24	28	1.99
14401550--14401602	26	2.0	26	92	0	88	28	20	24	26	1.99
14399994--14403581	898	4.0	897	87	1	4911	25	24	24	25	2.00
14403352--14403404	26	2.0	26	92	0	88	28	18	26	26	1.98
14410203--14410255	26	2.0	26	88	0	79	30	20	20	28	1.98
14411093--14411144	25	2.0	26	96	3	97	26	17	25	30	1.97
14409335--14415724	890	7.2	900	80	8	6440	25	23	24	25	2.00
14414649--14414699	26	2.0	26	96	0	93	29	17	23	29	1.97
14415481--14415533	26	2.0	26	92	0	88	28	18	24	28	1.98
14415507--14415883	159	2.4	159	81	1	416	22	28	29	19	1.98
14417415--14417467	26	2.0	26	88	0	79	24	15	28	32	1.95
14415645--14420920	880	6.0	867	83	6	5953	25	23	24	26	2.00
14421504--14421556	26	2.0	26	96	0	97	28	20	24	26	1.99
14422398--14422447	26	1.9	26	95	0	91	32	16	22	30	1.95
14422561--14424004	710	2.0	715	88	2	2152	25	23	24	27	2.00
14424870--14425092	120	1.9	120	88	1	340	21	25	34	18	1.96
14425840--14425889	26	1.9	26	88	8	75	32	20	24	24	1.98
14424001--14425984	1000	2.0	979	86	4	2784	24	23	25	25	2.00
14427005--14427057	26	2.0	26	96	0	97	32	20	20	26	1.98
14427112--14429537	902	2.7	898	87	3	3450	25	24	24	25	2.00
14430224--14430276	26	2.0	26	92	0	88	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14432297--14432347	26	2.0	26	92	0	84	27	15	27	29	1.96
14433174--14433226	26	2.0	26	100	0	106	26	16	26	30	1.97
14431562--14435664	876	4.6	900	85	4	5247	25	23	24	26	2.00
14434965--14436363	700	2.0	699	86	1	1982	26	20	24	28	1.99
14441240--14441289	26	1.9	26	91	0	82	28	16	26	30	1.96
14442208--14442260	26	2.0	26	92	0	88	26	16	22	33	1.96
14443174--14443255	26	3.2	26	92	0	128	26	18	23	31	1.97
14444102--14444154	26	2.0	26	100	0	106	26	20	26	26	1.99
14444733--14444782	25	2.0	25	88	4	73	30	18	26	26	1.98
14446504--14446576	26	2.8	26	95	0	128	27	17	26	28	1.98
14447426--14447504	26	3.0	26	88	0	113	29	16	22	31	1.96
14444468--14456362	905	13.2	903	79	8	11319	25	24	24	25	2.00
14450103--14450155	26	2.0	26	88	0	79	24	16	28	30	1.97
14453615--14453667	26	2.0	26	88	0	79	28	16	26	28	1.97
14454627--14454678	26	2.0	25	92	3	86	28	21	25	25	1.99
14457105--14457157	26	2.0	26	92	0	88	28	18	24	28	1.98
14458014--14458066	26	2.0	26	92	0	88	26	22	24	26	2.00
14458264--14460838	687	3.8	683	86	5	3445	25	22	23	28	1.99
14462756--14462834	26	3.0	26	100	0	158	26	20	26	26	1.99
14463195--14463247	26	2.0	26	100	0	106	26	20	26	26	1.99
14464708--14464778	26	2.7	26	95	0	124	28	16	28	26	1.97
14464710--14464789	26	3.1	26	89	3	117	27	17	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14465635--14465687	26	2.0	26	96	0	97	28	20	24	26	1.99
14465865--14465889	12	2.1	12	100	0	50	8	28	64	0	1.22
14470421--14470473	26	2.0	26	88	0	79	26	18	24	30	1.98
14470504--14475533	894	5.7	891	85	3	6189	25	23	24	26	2.00
14473905--14473962	26	2.2	26	84	0	80	29	17	22	31	1.96
14475623--14475674	26	2.0	26	92	0	86	30	15	21	32	1.94
14476349--14476399	26	2.0	25	88	3	75	31	19	21	27	1.97
14477244--14477294	26	2.0	26	84	0	66	33	9	25	31	1.88
14478144--14478196	26	2.0	26	92	0	88	28	18	24	28	1.98
14475648--14487250	898	12.7	898	72	12	6813	25	23	24	25	2.00
14479912--14479963	26	2.0	26	92	0	86	30	19	23	26	1.98
14480267--14480319	26	2.0	26	100	0	106	26	20	26	26	1.99
14482130--14482192	8	7.9	8	92	0	108	15	25	58	0	1.37
14484641--14484693	26	2.0	26	92	0	88	28	18	24	28	1.98
14485538--14485587	26	1.9	26	91	0	82	28	22	24	26	1.99
14486439--14486488	26	1.9	26	100	0	100	28	22	26	24	1.99
14481151--14487357	900	6.8	899	84	4	7600	25	23	25	26	2.00
14487881--14487931	26	2.0	26	92	0	84	31	19	21	27	1.97
14489364--14489416	26	2.0	26	100	0	106	26	20	26	26	1.99
14490226--14490275	26	1.9	26	95	0	91	30	22	24	24	1.99
14491127--14491179	26	2.0	26	96	0	97	28	20	24	26	1.99
14491310--14492774	722	2.0	714	87	2	2085	25	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14492748--14492800	26	2.0	26	96	0	97	28	20	24	26	1.99
14493637--14493687	26	2.0	26	96	0	93	31	19	21	27	1.97
14495409--14495460	26	2.0	26	92	0	86	28	19	23	28	1.98
14496313--14496364	26	2.0	26	92	3	88	26	23	23	26	2.00
14492004--14497229	902	5.8	899	84	4	6646	25	23	24	26	2.00
14496490--14500745	697	6.0	699	88	2	5769	26	23	23	26	2.00
14500719--14500769	26	2.0	26	100	0	102	27	19	25	27	1.99
14500420--14501115	346	2.0	348	85	1	950	25	27	24	22	2.00
14501091--14502866	878	2.0	869	85	4	2336	25	24	24	25	2.00
14502840--14502892	26	2.0	26	88	0	79	30	18	22	28	1.98
14503186--14503237	26	2.0	26	89	10	81	26	17	25	30	1.97
14505477--14505529	26	2.0	26	100	0	106	26	20	26	26	1.99
14506374--14506424	26	2.0	26	100	0	102	27	15	29	27	1.96
14505159--14510039	896	5.5	891	85	4	6248	25	24	24	25	2.00
14509893--14509944	26	2.0	26	100	0	104	26	19	26	26	1.99
14510665--14510715	26	2.0	26	100	0	102	27	19	27	25	1.99
14511019--14512954	719	2.7	708	87	3	2807	26	22	24	26	2.00
14512928--14512980	26	2.0	26	92	0	88	26	16	26	30	1.97
14515307--14515359	26	2.0	26	88	0	79	28	16	26	28	1.97
14517061--14517111	26	2.0	26	100	0	102	27	15	27	29	1.96
14519751--14519803	26	2.0	26	100	0	106	26	20	26	26	1.99
14520656--14520708	26	2.0	26	85	7	72	30	16	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14514456--14522135	905	8.6	902	86	3	9842	25	23	24	26	2.00
14521560--14521612	26	2.0	26	96	0	97	28	20	24	26	1.99
14522344--14522395	26	2.0	26	92	0	86	26	15	26	30	1.96
14523245--14523297	26	2.0	26	92	0	88	26	18	28	26	1.98
14524138--14524190	26	2.0	26	92	0	88	26	16	26	30	1.97
14525029--14525078	26	2.0	25	88	4	73	32	18	20	30	1.96
14525261--14525286	4	6.5	4	100	0	52	0	26	73	0	0.84
14525933--14525985	26	2.0	26	92	7	90	26	16	26	30	1.97
14522140--14527291	893	5.8	902	87	3	6742	24	24	25	25	2.00
14526816--14526868	26	2.0	26	100	0	106	30	20	22	26	1.98
14527538--14527590	26	2.0	26	100	0	106	26	20	26	26	1.99
14528260--14528312	26	2.0	26	96	0	97	26	18	26	28	1.98
14527564--14530089	900	2.8	892	87	3	3568	26	23	24	26	2.00
14529347--14532232	710	4.0	710	84	5	3675	26	23	23	27	2.00
14532213--14532265	26	2.0	26	92	0	88	28	18	24	28	1.98
14533109--14533161	26	2.0	26	92	0	88	26	16	26	30	1.97
14533293--14533345	26	2.0	26	92	0	88	28	18	24	28	1.98
14533447--14533497	26	2.0	26	100	0	102	27	19	27	25	1.99
14535076--14535125	26	1.9	26	100	0	100	28	16	28	28	1.97
14533471--14540616	893	8.1	895	83	5	8523	25	24	24	25	2.00
14535943--14535995	26	2.0	26	92	0	88	26	20	24	28	1.99
14538584--14538634	26	1.9	27	84	4	68	33	15	25	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14535826--14540614	864	5.4	894	84	5	5877	25	24	24	25	2.00
14540374--14540426	26	2.0	26	88	0	79	30	18	22	28	1.98
14542761--14542811	26	2.0	26	96	0	93	29	19	27	23	1.98
14540626--14548041	876	8.5	874	83	5	8645	25	23	24	25	2.00
14547114--14547166	26	2.0	26	92	0	88	26	16	26	30	1.97
14547750--14548371	310	2.0	310	86	2	865	24	28	25	21	1.99
14548325--14548377	26	2.0	26	96	0	97	26	18	26	28	1.98
14551082--14551134	26	2.0	26	96	0	97	26	18	26	28	1.98
14553386--14558510	872	5.8	871	83	6	6076	25	24	24	25	2.00
14557476--14557528	26	2.0	26	92	0	88	24	20	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131