genome.fa.s2.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  108  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19211526--19211779	22	11.5	22	77	5	147	43	8	9	38	1.68
19211591--19211682	11	8.4	11	70	13	64	42	5	11	40	1.65
19212072--19212121	21	2.4	21	86	6	66	46	10	6	38	1.62
19212091--19212158	21	3.2	21	80	0	73	54	8	2	33	1.47
19212130--19212183	27	2.0	27	88	0	81	57	9	1	31	1.41
19214060--19214261	60	3.4	58	82	10	221	38	8	4	48	1.56
19214042--19214261	119	1.8	119	83	5	293	37	8	5	48	1.57
19215396--19215435	21	1.9	21	90	10	64	67	7	5	20	1.34
19215416--19215473	22	2.6	23	76	13	59	67	8	3	20	1.33
19216910--19216963	25	2.2	24	87	9	74	9	7	0	83	0.82
19216910--19216962	13	4.2	12	75	17	54	7	7	0	84	0.76
19231237--19231292	24	2.3	24	100	0	112	50	3	7	39	1.47
19234414--19234733	59	5.5	58	81	5	326	39	7	5	47	1.56
19234597--19234682	25	3.2	25	67	25	66	39	3	5	51	1.43
19234414--19234733	116	2.7	116	81	6	378	39	7	5	47	1.56
19234713--19234756	21	2.1	21	91	4	72	40	0	4	54	1.21
19235827--19235866	21	1.9	21	84	0	53	65	12	7	15	1.47
19235861--19235897	17	2.1	19	90	10	60	72	5	2	18	1.15
19237118--19237175	28	2.1	28	83	6	73	27	1	0	70	0.97
19237134--19237175	21	2.0	21	85	0	57	26	0	0	73	0.83
19237116--19237177	27	2.2	29	81	16	78	30	1	0	67	1.00
19238059--19238083	13	1.9	13	100	0	50	24	16	4	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19238283--19238307	12	2.1	12	100	0	50	68	8	8	16	1.38
19240496--19240528	16	2.1	16	100	0	66	27	42	24	6	1.78
19241421--19241465	21	2.1	21	88	8	65	37	26	8	26	1.86
19242461--19242504	22	2.0	22	100	0	88	36	31	9	22	1.86
19247046--19247103	29	2.0	29	100	0	116	10	24	20	44	1.82
19250035--19250316	140	2.0	140	97	0	537	25	25	20	28	1.99
19250634--19250719	25	3.4	25	73	10	75	54	1	0	44	1.07
19255839--19255887	3	16.3	3	100	0	98	34	0	0	65	0.93
19267179--19267295	30	3.8	30	78	7	92	49	2	7	40	1.45
19268416--19268545	60	2.1	60	84	5	163	38	6	6	48	1.55
19268794--19268829	2	19.0	2	88	11	58	52	0	0	47	1.00
19274406--19274456	23	2.2	23	82	6	59	50	0	3	45	1.20
19274520--19274556	19	2.0	18	89	5	56	48	0	0	51	1.00
19276606--19276632	9	3.0	9	100	0	54	55	0	0	44	0.99
19277425--19277450	2	13.0	2	100	0	52	50	0	0	50	1.00
19278490--19278532	14	2.9	14	79	6	50	79	0	11	9	0.95
19278791--19278820	15	1.9	16	93	6	53	83	0	6	10	0.81
19284619--19284662	22	2.0	22	95	0	79	31	11	13	43	1.80
19291724--19291827	44	2.4	42	79	9	118	58	10	7	23	1.57
19292299--19292382	20	4.2	20	92	0	132	48	10	3	36	1.55
19292299--19292383	40	2.1	40	95	0	152	48	10	4	36	1.59
19292299--19292436	40	3.4	40	81	4	125	47	10	5	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19292459--19292595	62	2.3	60	79	15	142	52	10	5	31	1.58
19293888--19293964	6	13.0	6	83	2	57	63	7	2	25	1.34
19295044--19295187	40	3.6	40	79	4	139	32	13	12	41	1.81
19295114--19295210	40	2.5	39	80	9	108	39	12	10	38	1.77
19295810--19296025	50	4.3	49	77	9	163	34	13	13	37	1.84
19296437--19296479	20	2.2	20	83	8	52	62	11	16	9	1.53
19296587--19296656	7	10.7	7	76	14	69	48	35	0	15	1.46
19296593--19296644	19	2.7	20	84	3	70	48	34	0	17	1.48
19296594--19296659	12	5.2	12	78	10	62	51	34	0	13	1.41
19298021--19298060	19	2.1	19	95	0	71	37	22	5	35	1.76
19298838--19298867	13	2.3	13	100	0	60	63	0	0	36	0.95
19298882--19298916	15	2.3	16	90	9	56	42	0	5	51	1.25
19298920--19298951	14	2.2	15	94	5	57	43	0	0	56	0.99
19300088--19300112	11	2.3	11	100	0	50	68	8	0	24	1.16
19301649--19301732	20	4.3	20	74	15	70	39	1	7	52	1.37
19301605--19301742	48	2.9	45	80	10	123	38	2	6	52	1.39
19301628--19301741	9	12.0	9	68	15	61	41	1	6	50	1.37
19301632--19301744	20	5.2	20	69	21	59	38	1	6	53	1.36
19302765--19302795	1	31.0	1	100	0	62	0	0	0	100	0.00
19304624--19304757	65	2.1	65	97	0	250	33	9	5	51	1.57
19306216--19306258	2	21.5	2	90	0	68	51	0	0	48	1.00
19312724--19312829	30	3.5	30	76	12	92	39	7	0	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19313354--19313404	26	2.0	26	88	7	77	56	33	0	9	1.32
19313406--19313445	20	2.0	20	95	0	71	55	30	2	12	1.50
19313368--19313459	19	4.9	19	78	7	89	52	33	2	11	1.50
19321221--19321271	26	2.0	26	88	7	77	56	33	0	9	1.32
19321225--19321307	25	3.2	26	76	8	71	51	34	1	12	1.47
19321235--19321333	19	5.3	19	82	2	110	50	36	2	11	1.49
19321348--19321458	52	2.1	53	79	15	117	45	28	0	24	1.59
19321375--19321443	33	2.1	33	83	5	86	49	27	1	21	1.58
19321260--19321513	19	13.9	19	66	19	87	46	31	1	20	1.62
19321232--19321515	7	44.5	6	65	23	70	46	32	1	19	1.60
19321233--19321519	19	15.6	19	64	22	64	47	31	1	19	1.60
19323148--19323182	17	2.2	16	90	10	54	40	0	5	54	1.24
19329124--19329165	18	2.6	16	82	14	50	11	2	14	71	1.24
19329130--19329165	18	2.1	17	89	5	54	11	2	13	72	1.23
19331112--19331178	24	2.8	24	80	8	82	73	10	8	7	1.26
19333398--19333440	14	2.9	15	86	6	52	79	4	16	0	0.90
19333408--19333458	24	2.1	24	85	7	68	80	1	15	1	0.89
19333406--19333453	16	2.9	16	82	17	62	79	2	18	0	0.84
19336405--19336508	44	2.4	42	81	9	127	59	10	6	23	1.54
19336979--19337067	40	2.2	40	95	0	160	49	11	4	34	1.59
19336979--19337117	20	6.8	20	81	5	145	47	10	5	35	1.62
19338546--19338616	6	12.0	6	81	3	54	63	7	2	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19339684--19339920	40	5.9	39	75	7	136	35	12	12	40	1.81
19340425--19340731	50	6.1	50	74	5	226	34	10	14	39	1.81
19341209--19341334	7	19.7	7	70	18	78	46	34	1	17	1.58
19341209--19341334	38	3.3	37	76	10	112	46	34	1	17	1.58
19341216--19341322	19	5.6	19	78	11	94	45	34	1	17	1.60
19341231--19341337	12	8.7	12	70	15	67	47	34	1	15	1.57
19341299--19341349	24	2.1	24	85	7	68	54	31	0	13	1.39
19343504--19343533	13	2.3	13	100	0	60	63	0	0	36	0.95
19343542--19343572	14	2.2	14	94	0	53	38	0	9	51	1.35
19343585--19343616	14	2.2	15	94	5	57	43	0	0	56	0.99
19344680--19345150	230	2.0	232	97	1	901	44	16	12	26	1.83
19346506--19346557	20	2.6	20	77	17	54	36	1	5	55	1.35
19346521--19346634	9	12.0	9	66	17	61	42	1	5	50	1.35
19346525--19346637	20	5.2	20	68	21	59	38	1	5	53	1.34
19349492--19349621	65	2.0	65	95	0	233	33	10	5	50	1.58
19355356--19355453	49	2.0	49	97	0	187	37	11	10	40	1.75
19356973--19357029	25	2.3	25	84	0	78	40	7	1	50	1.40
19357416--19357446	12	2.6	12	94	0	53	61	0	9	29	1.28
19357566--19357613	20	2.4	19	83	10	60	43	0	0	56	0.99
19368435--19368468	7	5.1	7	89	10	54	44	26	14	14	1.84
19368433--19368468	13	2.8	13	95	0	63	41	27	16	13	1.87
19371256--19371336	36	2.2	36	95	0	144	11	44	16	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19374556--19374585	10	3.1	10	95	4	53	63	0	0	36	0.95
19382522--19382558	17	2.1	18	90	5	58	62	0	0	37	0.96
19384842--19384887	24	1.9	24	82	8	58	23	10	2	63	1.38
19392207--19392236	13	2.4	13	94	5	53	0	13	0	86	0.57
19392207--19392244	15	2.5	15	79	12	51	0	15	2	81	0.80
19394822--19394870	3	16.3	3	100	0	98	34	0	0	65	0.93
19394876--19395124	135	1.9	134	91	0	408	33	22	9	34	1.86
19401530--19401565	16	2.3	16	90	4	56	66	0	0	33	0.92
19401537--19401586	16	3.0	16	85	5	55	70	0	2	28	0.99
19401689--19401761	32	2.3	32	86	4	105	28	8	1	61	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131