genome.fa.s2.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  103  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18455636--18455741	48	2.2	47	79	14	112	69	6	0	22	1.17
18455652--18455740	15	5.9	15	73	20	71	71	5	1	21	1.12
18456612--18456780	3	58.3	3	74	9	91	63	8	2	25	1.37
18470423--18470475	10	5.8	10	84	10	62	81	0	18	0	0.70
18470431--18470470	8	4.9	8	90	3	53	82	0	17	0	0.67
18470423--18470475	18	3.0	18	81	13	74	81	0	18	0	0.70
18470801--18470887	35	2.5	35	86	1	131	22	13	10	52	1.71
18470896--18470998	36	2.9	36	77	1	109	26	29	5	38	1.79
18471019--18471089	36	2.0	36	86	2	99	19	15	12	52	1.75
18472032--18472105	25	2.9	24	78	9	76	71	12	12	4	1.27
18473425--18473576	36	4.2	36	76	6	139	47	11	21	19	1.80
18473425--18473576	72	2.1	72	79	7	166	47	11	21	19	1.80
18473545--18473667	36	3.4	36	75	6	97	53	11	15	19	1.72
18474028--18474109	33	2.4	33	78	13	87	3	18	1	76	0.99
18474035--18474092	23	2.5	22	78	8	62	3	22	0	74	0.97
18474027--18474115	34	2.6	33	79	16	92	3	17	1	77	0.97
18482268--18482318	4	12.8	4	91	0	84	45	0	25	29	1.54
18488853--18488877	2	12.5	2	100	0	50	48	0	0	52	1.00
18492922--18492954	14	2.3	15	89	5	50	42	6	6	45	1.53
18493541--18493616	27	2.8	26	80	9	80	22	1	23	52	1.54
18493582--18493627	20	2.2	21	88	3	67	15	0	28	56	1.39
18493570--18493626	27	2.1	26	81	12	62	15	1	28	54	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18493506--18493608	13	7.8	13	73	4	80	21	2	25	50	1.62
18493765--18493974	3	68.7	3	77	13	189	30	1	3	64	1.19
18494368--18494419	2	26.0	2	92	0	86	50	0	3	46	1.20
18495468--18495516	22	2.2	22	92	0	80	6	14	8	71	1.29
18502430--18502470	19	2.2	19	86	0	55	14	7	29	48	1.71
18502908--18502948	18	2.3	18	88	12	59	21	0	2	75	0.92
18504158--18504249	35	2.6	35	84	6	107	22	16	22	38	1.93
18505408--18505489	41	2.0	41	95	0	146	30	18	13	37	1.89
18506112--18506206	47	2.0	47	89	4	147	46	13	5	34	1.66
18508194--18508225	16	1.9	16	93	6	55	25	12	0	62	1.30
18508925--18508958	1	34.0	1	100	0	68	100	0	0	0	0.00
18512199--18512231	3	11.0	3	93	0	57	66	3	0	30	1.06
18514880--18514927	2	24.0	2	100	0	96	50	0	50	0	1.00
18517995--18518019	2	12.5	2	100	0	50	52	0	48	0	1.00
18519883--18519908	1	26.0	1	100	0	52	100	0	0	0	0.00
18521493--18521564	25	2.9	25	75	10	76	52	1	1	44	1.18
18521807--18521833	2	13.5	2	100	0	54	51	0	0	48	1.00
18522146--18522344	99	2.0	100	85	2	267	36	17	23	22	1.95
18537429--18537606	88	2.0	87	89	5	270	42	12	11	32	1.80
18538266--18538312	24	1.9	25	86	4	69	27	12	19	40	1.88
18553742--18553792	18	2.8	18	77	16	61	31	17	15	35	1.92
18556450--18556491	19	2.2	19	87	8	59	71	0	4	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18556450--18556491	20	2.2	19	86	4	57	71	0	4	23	1.05
18558165--18558505	58	5.7	57	76	12	278	40	10	5	43	1.62
18558162--18558504	121	2.9	117	83	7	404	40	10	5	42	1.63
18560206--18560392	89	2.1	89	91	4	297	35	15	13	35	1.87
18560446--18561045	83	7.2	82	86	4	749	39	21	14	24	1.91
18560446--18561045	41	14.4	41	85	4	747	39	21	14	24	1.91
18561315--18561420	43	2.5	42	83	10	133	33	16	11	38	1.84
18567578--18567861	118	2.4	118	88	5	419	36	11	7	43	1.71
18567578--18567862	120	2.4	119	87	5	407	36	11	7	43	1.70
18573930--18573980	26	2.0	26	84	7	68	27	5	5	60	1.43
18577822--18577864	20	2.2	19	83	4	50	76	2	18	2	1.00
18578347--18578727	193	2.0	193	90	2	595	28	16	15	38	1.90
18579278--18579363	12	7.2	12	74	17	63	76	0	16	6	0.99
18579292--18579359	20	3.5	19	76	11	66	77	0	16	5	0.95
18580557--18580929	32	11.7	32	74	11	230	38	18	14	28	1.90
18580540--18580897	96	3.7	96	81	5	341	38	18	14	29	1.90
18580589--18580929	64	5.3	62	77	7	292	38	18	15	28	1.91
18581129--18581212	31	2.7	31	83	0	105	28	20	9	41	1.83
18581392--18581477	9	10.0	9	82	8	83	82	4	0	12	0.81
18581428--18581476	1	49.0	1	79	0	53	89	0	0	10	0.48
18581393--18581475	8	9.9	8	84	10	78	83	4	0	12	0.80
18581812--18581853	21	2.0	20	82	17	50	66	0	4	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18583721--18583771	20	2.6	19	74	17	50	43	25	9	21	1.83
18583942--18583976	18	2.0	17	88	5	52	77	2	5	14	1.07
18586578--18586602	11	2.3	11	100	0	50	92	0	8	0	0.40
18586812--18586854	17	2.6	17	85	3	61	55	4	0	39	1.20
18586833--18586881	12	4.2	12	82	12	57	55	2	0	42	1.11
18586833--18586881	2	26.0	2	76	12	50	55	2	0	42	1.11
18588372--18588422	24	2.0	26	85	11	70	41	1	0	56	1.10
18588372--18588448	27	2.9	27	80	7	77	44	1	0	54	1.08
18589442--18589503	11	5.4	11	76	14	54	50	8	3	38	1.48
18589466--18589493	14	2.0	14	100	0	56	35	14	7	42	1.73
18589453--18589499	12	3.8	12	84	13	60	44	10	4	40	1.59
18592702--18592824	61	2.0	61	95	0	219	47	3	4	45	1.38
18596573--18596604	14	2.1	16	88	11	50	28	12	6	53	1.62
18597462--18597495	17	2.0	17	88	11	52	8	14	11	64	1.49
18599996--18600059	33	1.9	33	93	0	110	32	21	12	32	1.91
18601652--18602294	321	2.0	319	95	0	1169	30	18	14	36	1.91
18607657--18607725	32	2.2	32	82	7	88	46	1	4	47	1.31
18610335--18610391	29	2.0	29	96	0	105	35	14	12	38	1.83
18612352--18612385	2	17.0	2	93	0	59	47	0	2	50	1.16
18612853--18612906	21	2.8	18	78	15	56	44	1	1	51	1.22
18612892--18612933	13	3.2	13	80	6	50	52	0	0	47	1.00
18612896--18612967	37	1.9	38	88	8	112	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18612890--18612950	26	2.4	24	84	13	70	54	0	0	45	1.00
18613148--18613185	17	2.1	19	90	9	62	39	0	2	57	1.12
18613171--18613212	13	3.2	13	80	6	50	50	0	2	47	1.14
18618102--18618207	33	3.2	33	69	5	97	38	18	15	27	1.91
18619335--18620447	160	6.9	160	73	8	699	43	13	9	33	1.76
18619536--18620447	481	1.9	482	81	4	1113	43	13	9	33	1.77
18619592--18620505	321	2.9	317	77	6	763	42	14	9	33	1.77
18627968--18628167	56	3.6	56	78	7	219	52	7	15	25	1.69
18627945--18628200	111	2.4	107	84	5	336	50	8	14	27	1.71
18627947--18628195	56	4.6	54	76	8	213	49	8	14	26	1.72
18632160--18632261	1	102.0	1	75	0	87	87	0	0	10	0.65
18632160--18632260	7	13.9	7	86	10	100	87	0	0	10	0.65
18632160--18632261	8	12.8	8	88	7	138	87	0	0	10	0.65
18633388--18633689	65	4.6	65	80	8	283	38	9	13	38	1.77
18633388--18633689	21	13.9	22	79	10	246	38	9	13	38	1.77
18633959--18634049	42	2.2	43	78	9	98	35	10	18	35	1.86
18634291--18634471	41	4.4	41	81	7	199	23	9	17	49	1.76
18634300--18634453	82	1.9	82	91	2	256	22	10	16	50	1.76
18634612--18634656	8	5.6	8	84	10	56	80	0	2	17	0.82
18635708--18635906	56	3.7	56	78	10	234	50	11	13	25	1.74
18635703--18635950	105	2.3	104	89	4	363	49	10	12	27	1.73
18635703--18635862	49	3.1	49	77	8	176	52	11	11	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18636678--18636717	17	2.5	16	88	8	55	47	0	15	37	1.45
18638093--18638130	19	2.0	19	94	0	67	39	21	23	15	1.92
18638096--18638139	19	2.3	19	84	0	61	36	25	20	18	1.95
18646093--18646132	21	1.9	21	84	0	53	12	25	32	30	1.92
18648466--18648497	2	16.5	2	93	6	57	46	0	0	53	1.00
18650693--18650754	27	2.3	28	88	5	92	61	0	3	35	1.12
18650821--18650866	17	2.5	20	79	13	62	41	0	4	54	1.20
18651351--18651393	21	2.0	22	82	13	54	48	4	4	41	1.44
18651479--18651511	12	2.6	13	90	4	50	12	0	3	84	0.72
18652285--18652313	12	2.3	13	94	5	51	58	0	6	34	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131