genome.fa.s2.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  59  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11884134--11884209	23	3.3	23	69	10	73	28	11	2	56	1.49
11884131--11884225	47	2.0	47	97	0	181	29	13	2	54	1.51
11884246--11884290	3	14.7	3	82	13	56	28	0	0	71	0.87
11884246--11884294	16	2.9	16	80	17	55	30	0	0	69	0.89
11884258--11884301	22	2.0	22	86	0	61	34	0	0	65	0.93
11884431--11884469	16	2.5	16	87	4	53	23	5	0	71	1.05
11884443--11884472	10	2.8	11	90	10	53	23	0	0	76	0.78
11885300--11885369	13	4.9	14	71	22	56	2	5	17	74	1.14
11886687--11886774	34	2.6	34	80	7	99	29	9	21	39	1.84
11888272--11888430	86	1.8	86	86	0	228	44	11	9	33	1.74
11893378--11893976	187	3.2	185	82	4	670	35	13	12	38	1.82
11894721--11894772	12	4.3	12	80	0	59	23	5	30	40	1.78
11894724--11894769	24	1.9	24	95	0	83	26	6	26	41	1.80
11894849--11894907	12	4.9	12	85	0	73	32	13	18	35	1.90
11894915--11894980	25	2.7	25	83	2	71	22	9	28	39	1.85
11896988--11897012	11	2.3	11	100	0	50	28	16	48	8	1.74
11898145--11898215	35	2.0	36	86	2	99	32	16	14	36	1.89
11898351--11898888	298	1.8	294	82	2	700	36	14	12	36	1.85
11900653--11900725	5	14.4	5	75	11	51	24	0	5	69	1.09
11900633--11900673	19	2.2	19	86	0	55	12	2	4	80	0.97
11900752--11900798	5	9.6	5	88	11	55	78	2	0	19	0.85
11900764--11900799	11	3.3	11	85	14	56	80	2	0	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11900752--11900806	17	3.2	17	80	17	60	76	3	0	20	0.94
11901261--11901293	9	3.7	9	88	11	50	66	0	0	33	0.92
11901358--11901404	24	2.0	24	83	8	60	46	8	17	27	1.76
11902874--11902904	2	15.5	2	100	0	62	0	48	0	51	1.00
11906829--11906890	20	3.1	19	78	17	63	12	4	22	59	1.52
11909069--11909093	13	1.9	13	100	0	50	32	16	4	48	1.64
11910576--11911182	310	2.0	311	89	1	932	39	15	25	19	1.91
11912891--11912915	12	2.1	12	100	0	50	32	8	8	52	1.60
11914575--11914615	13	3.1	13	82	6	55	51	7	7	34	1.58
11916383--11916456	19	3.9	19	78	5	71	64	8	2	24	1.34
11916424--11916457	11	2.9	12	86	8	52	61	8	5	23	1.47
11925946--11925996	25	2.0	25	85	7	68	52	17	3	25	1.61
11925957--11926008	25	2.1	25	92	0	86	46	17	5	30	1.71
11928636--11929029	130	3.0	129	78	7	390	34	8	16	40	1.79
11928675--11929136	130	3.6	129	78	4	306	35	8	16	39	1.80
11929136--11929443	129	2.4	127	81	7	334	36	9	16	37	1.82
11929148--11929481	129	2.6	129	79	9	326	35	10	16	37	1.83
11929482--11929522	21	2.0	21	95	0	73	24	4	26	43	1.74
11943873--11943918	14	3.2	14	79	14	58	80	8	4	6	1.01
11943873--11943919	15	3.2	15	79	14	62	80	8	4	6	1.00
11944874--11944995	50	2.4	49	82	6	156	36	14	14	34	1.87
11945037--11945095	22	2.7	22	86	5	75	33	30	15	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11945367--11945412	22	2.1	22	88	8	67	36	17	8	36	1.81
11945571--11945611	15	2.6	16	84	11	57	78	7	2	12	1.06
11945618--11945749	37	3.6	35	76	12	122	32	20	17	29	1.95
11945781--11945936	37	4.2	37	77	4	129	27	16	20	35	1.94
11946425--11946965	144	3.7	143	81	4	561	33	14	12	39	1.83
11950141--11950481	139	2.4	139	80	7	366	39	14	12	32	1.85
11951123--11951605	128	3.7	128	78	5	481	38	18	6	36	1.77
11951119--11951632	130	4.0	128	78	3	496	38	19	7	35	1.79
11951647--11952513	130	6.7	127	75	7	586	39	16	7	36	1.77
11951809--11952479	259	2.6	255	79	6	636	39	16	7	37	1.76
11952700--11953458	129	6.0	127	74	10	426	39	17	7	36	1.77
11952723--11953896	130	9.2	130	75	9	787	38	16	8	36	1.78
11953311--11953781	259	1.8	254	79	4	550	38	16	9	36	1.80
11953934--11954596	127	5.2	130	72	7	330	39	16	8	35	1.79
11953934--11955581	130	12.9	130	74	6	1152	39	16	7	36	1.78
11954722--11955590	128	6.7	129	77	5	682	37	16	7	37	1.77
11955728--11957047	129	10.3	129	75	9	931	38	17	8	36	1.79
11955757--11957047	258	5.0	257	77	8	1078	38	17	8	36	1.79
11955777--11957047	383	3.3	386	77	7	1004	38	16	8	36	1.79
11955888--11956951	513	2.1	512	79	5	1144	38	16	8	36	1.79
11958243--11958281	3	13.0	3	88	0	60	30	2	2	64	1.21
11960161--11960566	144	2.8	143	82	6	468	43	13	12	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11961098--11961256	36	4.5	35	78	8	135	54	6	15	22	1.65
11961240--11961726	71	6.8	71	72	8	228	47	14	21	16	1.82
11961281--11961733	36	12.7	36	72	11	256	47	15	20	16	1.82
11961705--11961763	29	2.0	29	83	6	75	49	18	18	13	1.80
11968276--11968304	12	2.5	12	94	5	51	37	0	0	62	0.96
11968302--11968337	12	3.0	13	88	11	51	36	0	0	63	0.94
11968279--11968327	20	2.5	19	76	6	53	34	0	0	65	0.93
11968311--11968354	16	2.8	16	82	0	52	34	0	0	65	0.93
11968311--11968358	18	2.8	17	84	6	62	35	0	0	64	0.94
11970343--11970395	27	2.0	27	81	7	63	41	15	1	41	1.57
11970306--11970731	129	3.3	129	75	5	362	38	16	7	37	1.77
11970235--11971025	130	6.2	131	73	8	459	39	14	8	37	1.77
11971036--11973674	130	20.4	130	75	6	1756	38	16	8	36	1.79
11971036--11973731	389	6.9	385	74	8	1671	38	16	8	36	1.79
11971036--11973729	519	5.2	513	75	7	1700	38	16	8	36	1.79
11971462--11973620	779	2.8	778	76	5	1648	38	15	8	36	1.78
11971036--11973674	649	4.1	643	76	6	2066	38	16	8	36	1.79
11973737--11974882	129	9.0	128	76	8	862	37	17	8	36	1.80
11973743--11974882	259	4.5	256	75	10	837	37	17	8	36	1.80
11974394--11974608	116	1.9	116	85	3	299	36	18	8	36	1.82
11975006--11975222	120	1.8	118	82	5	276	36	10	15	37	1.82
11975813--11976320	35	14.5	35	74	7	221	46	15	22	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11975866--11976178	70	4.5	70	88	2	405	45	15	23	15	1.84
11975830--11976053	105	2.1	106	81	5	249	45	16	23	14	1.84
11975832--11976293	70	6.6	69	79	8	362	45	15	22	16	1.84
11975832--11976293	140	3.3	139	79	6	461	45	15	22	16	1.84
11988898--11988928	16	1.9	16	93	0	53	45	9	12	32	1.75
11989091--11989119	2	14.5	2	100	0	58	48	0	0	51	1.00
11991244--11992060	130	6.3	130	75	7	630	39	17	8	34	1.80
11992063--11992460	130	3.1	129	76	7	342	39	16	9	35	1.80
11993254--11993503	130	1.9	130	80	8	285	39	16	5	39	1.70
11993568--11993928	134	2.8	128	76	8	305	40	16	7	35	1.76
11993563--11993992	129	3.3	130	76	7	332	39	16	7	36	1.76
11994004--11994914	128	7.0	129	74	9	631	38	17	7	37	1.77
11994018--11994667	255	2.5	256	80	6	651	37	17	7	37	1.78
11994094--11994667	257	2.2	254	80	6	628	37	16	7	38	1.77
11994976--11995884	130	7.0	130	78	6	825	39	16	6	37	1.75
11995015--11995884	259	3.4	259	79	7	919	39	16	6	37	1.74
11995973--11997366	130	10.7	129	73	9	820	38	17	8	36	1.79
11996506--11996825	129	2.5	129	81	4	315	38	17	8	35	1.80
11997680--11998450	131	6.0	128	73	7	494	38	15	9	35	1.81
11997988--11998412	128	3.4	129	79	7	437	37	16	8	36	1.79
11998811--11999392	257	2.3	259	80	7	614	39	17	7	35	1.78
11998465--11999668	130	9.3	131	72	8	621	38	18	8	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12000277--12000524	130	1.9	130	80	3	291	43	15	6	35	1.72
12000357--12001319	130	7.4	129	76	4	773	39	17	9	34	1.82
12001331--12003686	130	18.1	129	71	11	841	39	17	7	35	1.78
12001692--12002319	129	4.8	128	74	10	307	40	16	8	35	1.79
12002933--12003430	261	1.9	260	81	4	601	38	17	8	35	1.80
12003770--12004070	130	2.3	129	79	4	293	38	17	8	34	1.81
12003894--12004830	130	7.3	128	74	7	582	38	18	9	34	1.83
12004999--12006148	130	8.9	127	73	11	650	38	17	8	35	1.80
12005043--12005866	128	6.4	129	72	11	352	39	16	8	34	1.79
12005762--12006001	122	2.0	122	82	8	301	39	18	8	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131