genome.fa.s2.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  61  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12126209--12128739	872	2.9	872	84	6	3149	24	24	24	26	2.00
12133661--12133706	24	2.0	23	87	8	67	36	13	10	39	1.79
12135090--12135149	26	2.4	26	86	5	88	28	26	20	25	1.99
12133859--12137173	894	3.7	903	84	4	4003	25	25	24	24	2.00
12135984--12136036	26	2.0	26	85	0	70	30	22	16	30	1.96
12137176--12140963	899	4.2	899	86	2	5092	25	24	24	25	2.00
12140211--12141674	706	2.1	702	86	5	2045	27	23	23	26	2.00
12141786--12141838	26	2.0	26	92	0	88	28	24	18	28	1.98
12142685--12142737	26	2.0	26	96	0	97	28	26	18	26	1.98
12140930--12147919	892	7.9	893	84	5	8704	26	24	23	25	2.00
12143570--12143621	26	2.0	26	85	10	72	26	25	17	30	1.97
12144458--12144510	26	2.0	26	96	0	97	28	26	18	26	1.98
12146243--12146295	26	2.0	26	85	0	70	32	24	15	28	1.95
12147139--12147191	26	2.0	26	96	0	97	28	26	18	26	1.98
12151160--12151185	8	3.2	8	100	0	52	0	61	26	11	1.30
12151362--12151414	26	2.0	26	100	0	106	26	26	20	26	1.99
12152244--12152296	26	2.0	26	92	0	88	28	24	18	28	1.98
12153149--12153201	26	2.0	26	96	0	97	26	24	22	26	2.00
12157480--12157532	26	2.0	26	88	0	79	28	22	22	26	1.99
12158378--12158430	26	2.0	26	92	0	88	26	24	18	30	1.98
12160164--12160216	26	2.0	26	92	0	88	28	24	18	28	1.98
12156677--12172643	898	17.7	902	85	3	19687	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12161970--12162022	26	2.0	26	96	0	97	28	26	18	26	1.98
12163678--12163756	26	3.0	26	90	0	131	30	25	15	29	1.96
12164603--12164681	26	3.0	26	94	0	131	27	24	18	29	1.98
12165536--12165588	26	2.0	26	100	0	106	26	26	20	26	1.99
12168216--12168268	26	2.0	26	88	0	79	30	20	20	28	1.98
12169119--12169170	26	2.0	26	96	0	95	30	21	21	26	1.98
12170021--12170073	26	2.0	26	92	0	88	28	24	18	28	1.98
12170930--12170982	26	2.0	26	96	0	97	24	26	22	26	2.00
12171833--12171910	26	3.0	25	83	7	102	30	21	16	30	1.96
12175027--12175077	26	2.0	26	96	0	93	29	25	17	27	1.98
12175051--12177943	687	4.1	713	88	3	4165	26	24	23	25	2.00
12178047--12178099	26	2.0	26	96	0	97	26	26	18	28	1.98
12178940--12178992	26	2.0	26	88	0	79	26	20	20	32	1.98
12179837--12179887	26	2.0	26	96	0	93	33	25	13	27	1.94
12180742--12180794	26	2.0	26	96	0	97	26	24	20	28	1.99
12181454--12184878	865	3.9	863	83	6	4189	25	24	23	25	2.00
12182351--12184878	899	2.8	892	87	2	3489	25	24	23	26	2.00
12184855--12184904	26	1.9	26	100	0	100	28	26	16	30	1.96
12184047--12185533	732	2.0	732	90	1	2343	26	24	23	25	2.00
12184792--12187430	898	3.0	890	83	7	3324	25	24	24	25	2.00
12186663--12188110	707	2.0	708	84	6	1914	26	23	23	26	2.00
12188242--12188291	26	1.9	26	95	0	91	26	24	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12189140--12189218	26	3.0	26	88	0	122	30	24	17	27	1.97
12187377--12190074	919	3.0	917	84	4	3020	25	24	24	25	2.00
12190900--12190952	26	2.0	26	96	0	97	26	24	20	28	1.99
12191792--12191844	26	2.0	26	88	0	79	30	22	20	26	1.98
12190172--12192562	892	2.7	891	88	2	3414	26	24	23	25	2.00
12191818--12193277	702	2.1	703	89	3	2198	26	23	23	26	2.00
12194257--12194309	26	2.0	26	100	0	106	26	26	20	26	1.99
12192748--12195048	859	2.6	870	83	6	2783	27	24	22	25	2.00
12196173--12196229	25	2.2	26	81	6	62	57	8	8	24	1.57
12196599--12196651	26	2.0	26	96	0	97	26	24	20	28	1.99
12197506--12197557	26	2.0	26	92	0	86	28	19	19	32	1.96
12197978--12198052	26	2.9	26	91	0	123	45	13	16	25	1.83
12195726--12202708	906	7.9	899	82	7	7201	25	24	24	25	2.00
12199430--12199482	25	2.1	25	100	0	106	24	22	33	18	1.97
12200251--12202708	867	2.8	862	86	4	3437	25	24	24	25	2.00
12201920--12203406	718	2.1	707	88	2	2147	25	24	23	26	2.00
12202649--12213027	871	11.9	870	81	7	10959	26	24	23	25	2.00
12207030--12207080	26	2.0	26	84	0	66	31	27	7	33	1.85
12207933--12207985	26	2.0	26	88	0	79	30	22	18	28	1.98
12204408--12209540	903	5.8	898	84	5	6101	26	24	23	25	2.00
12213069--12216597	895	3.9	901	86	3	4826	25	24	24	25	2.00
12215668--12215720	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12216982--12217034	26	2.0	26	96	0	97	24	26	22	26	2.00
12217898--12217950	26	2.0	26	88	0	79	28	26	18	26	1.98
12219703--12219755	26	2.0	26	100	0	106	26	26	20	26	1.99
12220593--12220645	26	2.0	26	85	0	70	30	22	20	26	1.98
12216955--12222172	889	5.8	890	86	3	6654	26	24	23	25	2.00
12221482--12221534	26	2.0	26	88	0	79	28	20	20	30	1.98
12222272--12224661	876	2.7	868	87	3	3320	25	24	23	25	2.00
12223954--12225381	720	2.0	721	89	1	2218	26	23	23	26	2.00
12226279--12226631	191	1.8	191	86	4	507	17	30	28	22	1.97
12226661--12226713	26	2.0	26	92	0	88	30	26	16	26	1.97
12228282--12228333	26	2.0	26	92	0	86	26	19	21	32	1.97
12227380--12236935	872	10.9	872	83	5	11341	25	24	24	25	2.00
12233501--12233553	26	2.0	26	88	0	79	28	22	20	28	1.99
12234410--12234462	26	2.0	26	88	0	79	28	22	18	30	1.98
12236129--12237642	719	2.1	715	87	2	2219	26	24	23	26	2.00
12237755--12237805	26	2.0	26	92	0	84	27	25	17	29	1.98
12239247--12239306	26	2.3	26	97	0	111	31	25	16	26	1.96
12239520--12240168	323	2.0	323	91	1	1050	36	17	17	28	1.93
12240443--12240495	26	2.0	26	96	0	97	28	26	18	26	1.98
12241345--12241398	26	2.1	26	92	0	90	24	27	22	25	2.00
12242247--12242299	26	2.0	26	88	0	79	28	26	16	28	1.97
12239843--12244690	897	5.4	895	86	2	6340	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12243140--12243192	26	2.0	26	100	0	106	26	26	20	26	1.99
12244743--12244795	26	2.0	26	88	0	79	30	22	20	26	1.98
12245634--12245688	26	2.1	27	93	3	94	23	25	20	30	1.98
12246478--12246530	26	2.0	26	100	0	106	30	26	16	26	1.97
12246724--12252438	848	6.6	855	82	8	5894	25	24	23	25	2.00
12248983--12249034	26	2.0	26	92	3	88	26	26	21	25	1.99
12249873--12249925	26	2.0	26	89	7	81	24	20	22	32	1.98
12248107--12260622	904	13.8	892	74	12	8305	25	24	24	25	2.00
12250713--12250765	26	2.0	26	92	0	88	26	26	18	28	1.98
12248107--12252529	893	5.0	893	82	6	5133	25	25	24	25	2.00
12252496--12252563	34	2.0	34	88	5	102	17	25	29	27	1.97
12252334--12252717	193	2.0	193	83	1	482	21	28	28	21	1.98
12253598--12253650	26	2.0	26	89	7	81	30	24	16	28	1.97
12254505--12254554	26	1.9	26	95	0	91	24	26	20	30	1.98
12252527--12260623	904	9.1	901	85	3	10229	25	24	24	25	2.00
12255406--12255458	26	2.0	26	92	0	88	24	24	20	30	1.99
12256298--12256350	26	2.0	26	96	0	97	24	26	22	26	2.00
12258716--12259012	159	1.8	162	84	2	402	17	29	30	22	1.97
12259837--12259896	26	2.4	26	75	5	70	30	26	16	26	1.97
12259863--12261328	712	2.0	715	88	2	2140	26	24	23	25	2.00
12261453--12261505	26	2.0	26	96	0	97	28	26	18	26	1.98
12262333--12262385	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12265632--12265683	26	2.0	26	92	0	86	26	23	21	28	1.99
12266517--12266569	26	2.0	26	100	0	106	26	26	20	26	1.99
12263853--12268699	898	5.4	897	86	3	6480	25	25	24	25	2.00
12268316--12268368	26	2.0	26	92	0	88	24	28	18	28	1.98
12273177--12273229	26	2.0	26	96	0	97	28	26	18	26	1.98
12272307--12283092	903	12.1	902	84	4	12873	26	24	23	25	2.00
12275869--12275921	26	2.0	26	96	0	97	26	24	20	28	1.99
12276738--12276790	26	2.0	26	88	0	79	28	20	20	30	1.98
12281174--12281226	26	2.0	26	92	0	88	28	24	18	28	1.98
12282060--12282112	26	2.0	26	96	0	97	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131