genome.fa.s2.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  81  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14825709--14825761	26	2.0	26	92	0	88	26	16	26	30	1.97
14824092--14826635	900	2.8	900	88	2	3635	25	23	24	26	2.00
14827321--14827373	26	2.0	26	96	0	97	28	18	26	26	1.98
14828222--14828274	26	2.0	26	100	0	106	26	20	26	26	1.99
14829113--14829165	26	2.0	26	92	0	88	26	16	26	30	1.97
14826580--14832603	893	6.9	886	81	7	6593	25	24	24	25	2.00
14829964--14830016	26	2.0	26	88	0	79	28	16	24	30	1.97
14831686--14831736	26	2.0	26	96	0	93	27	19	23	29	1.98
14834858--14834910	26	2.0	26	96	0	97	28	20	24	26	1.99
14835711--14835763	26	2.0	26	96	0	97	24	20	28	26	1.99
14836613--14836663	26	2.0	26	92	0	84	27	11	29	31	1.92
14835737--14841950	876	7.1	864	83	5	7307	25	24	25	25	2.00
14840123--14840172	26	1.9	26	87	0	73	32	16	26	26	1.96
14835737--14841950	875	7.1	875	85	4	7613	25	24	25	25	2.00
14842415--14842467	26	2.0	26	96	0	97	22	16	30	30	1.96
14842419--14842812	184	2.1	184	82	2	461	23	27	27	21	1.99
14846820--14846871	26	2.0	26	88	3	79	26	13	25	34	1.93
14847684--14848578	350	2.6	350	93	0	1495	22	29	27	21	1.99
14849734--14849783	26	1.9	26	100	0	100	26	24	28	22	1.99
14849060--14849954	468	1.9	474	83	5	1177	24	31	26	18	1.98
14850749--14853458	718	3.8	710	86	4	3530	25	22	24	27	2.00
14854210--14854262	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14854955--14855007	26	2.0	26	100	0	106	26	20	26	26	1.99
14855859--14855911	26	2.0	26	92	7	90	26	16	26	30	1.97
14854559--14857246	898	3.0	886	84	5	3362	25	24	24	25	2.00
14857300--14857352	26	2.0	26	96	0	97	26	16	24	32	1.97
14858922--14858972	26	2.0	26	96	0	93	29	17	21	31	1.96
14860486--14860538	26	2.0	26	96	0	97	24	20	28	26	1.99
14862254--14862305	26	2.0	26	96	0	95	28	19	25	26	1.98
14861376--14864179	907	3.1	894	84	5	3595	25	23	24	25	2.00
14866129--14866181	26	2.0	26	96	0	97	26	18	26	28	1.98
14864219--14866703	893	2.8	890	86	2	3372	25	23	24	27	2.00
14867552--14867604	26	2.0	26	85	0	70	30	24	18	26	1.98
14868450--14868505	26	2.2	26	86	0	76	28	23	19	28	1.98
14866704--14870062	898	3.8	883	86	5	4396	25	23	24	26	2.00
14870858--14870910	26	2.0	26	100	0	106	30	20	22	26	1.98
14871760--14871810	26	2.0	26	92	0	84	29	11	29	29	1.92
14870064--14872905	901	3.1	899	87	2	4045	25	24	24	24	2.00
14874889--14874941	26	2.0	26	89	7	81	30	18	22	28	1.98
14875775--14875827	26	2.0	26	92	7	90	26	16	26	30	1.97
14878627--14883098	899	5.0	893	86	3	5828	25	24	24	25	2.00
14881275--14881328	26	2.1	26	92	0	90	27	18	25	27	1.98
14882172--14882224	26	2.0	26	96	0	97	24	20	26	28	1.99
14883050--14886766	872	4.2	878	85	4	4595	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14888695--14888747	26	2.0	26	92	0	88	28	18	24	28	1.98
14887228--14889610	876	2.7	877	87	4	3277	25	23	23	26	2.00
14890291--14890340	26	1.9	26	95	0	91	28	20	26	26	1.99
14893601--14893651	26	2.0	26	92	0	84	29	13	25	31	1.94
14895655--14895988	169	2.0	169	92	0	560	23	19	24	33	1.97
14896456--14896508	26	2.0	26	96	0	97	28	20	26	24	1.99
14898043--14898093	26	2.0	26	96	0	93	29	19	25	25	1.99
14897335--14899643	881	2.6	882	84	7	2817	26	22	24	26	2.00
14900287--14900339	26	2.0	26	96	0	97	26	18	26	28	1.98
14900899--14900932	17	2.0	17	88	0	50	23	47	17	11	1.81
14901944--14901996	26	2.0	26	100	0	106	26	20	26	26	1.99
14907354--14907399	22	2.1	22	100	0	92	41	36	13	8	1.75
14908977--14909029	26	2.0	26	82	7	63	32	18	18	30	1.96
14909158--14911312	718	3.0	715	87	3	3023	26	23	23	26	2.00
14911542--14911594	26	2.0	26	85	0	70	28	15	24	32	1.95
14912442--14912494	26	2.0	26	85	7	72	28	18	22	30	1.98
14915521--14915573	26	2.0	26	96	0	97	26	18	28	26	1.98
14914646--14917003	903	2.6	897	87	2	3221	24	22	26	26	2.00
14916424--14916476	26	2.0	26	96	0	97	26	18	26	28	1.98
14917029--14917068	17	2.4	17	91	0	62	20	47	25	7	1.75
14918081--14918133	26	2.0	26	100	0	106	26	20	26	26	1.99
14924708--14925827	370	3.0	370	95	0	1999	17	34	25	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14927953--14928005	26	2.0	26	82	7	63	32	18	18	30	1.96
14928134--14930289	718	3.0	716	87	3	3136	25	23	23	26	2.00
14930520--14930572	26	2.0	26	85	0	70	28	15	24	32	1.95
14931420--14931472	26	2.0	26	89	7	81	26	18	24	30	1.98
14933609--14933681	26	2.8	26	100	0	146	30	20	23	26	1.99
14933099--14945233	903	13.4	895	80	7	12356	25	23	24	25	2.00
14935427--14935479	26	2.0	26	85	7	72	26	18	26	28	1.98
14936266--14936303	19	2.0	19	89	0	58	42	18	23	15	1.89
14937251--14937303	26	2.0	26	92	0	88	28	18	24	28	1.98
14933099--14945233	892	13.4	896	73	11	7936	25	23	24	25	2.00
14938340--14938416	26	3.0	26	100	0	154	31	19	22	27	1.98
14939160--14939212	26	2.0	26	88	0	79	26	18	24	30	1.98
14940047--14940097	26	2.0	26	92	0	84	31	15	23	29	1.95
14933099--14938026	899	5.5	878	83	6	4939	25	24	24	26	2.00
14943591--14943640	26	1.9	26	100	0	100	28	22	26	24	1.99
14944495--14944547	26	2.0	26	92	0	88	28	22	26	22	1.99
14944764--14945699	466	2.0	466	91	0	1498	27	17	21	32	1.96
14945852--14945904	26	2.0	26	96	0	97	32	16	20	30	1.95
14946167--14947089	479	1.9	479	91	0	1499	26	20	19	33	1.97
14948128--14948180	26	2.0	26	88	0	79	30	22	22	24	1.99
14946646--14948883	891	2.5	894	88	2	3269	26	22	23	27	2.00
14948532--14949284	389	1.9	389	89	0	1164	28	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14950137--14950189	26	2.0	26	88	0	79	32	20	20	26	1.98
14949387--14951955	901	2.9	897	84	5	3414	26	23	23	26	2.00
14951208--14952664	715	2.0	716	87	2	2120	26	22	23	27	2.00
14952645--14952697	26	2.0	26	96	0	97	30	18	22	28	1.98
14954337--14954389	26	2.0	26	92	0	88	30	20	22	26	1.98
14956097--14956149	26	2.0	26	92	0	88	26	20	26	26	1.99
14956973--14957025	26	2.0	26	96	0	97	28	20	24	26	1.99
14959694--14959746	26	2.0	26	100	0	106	26	20	26	26	1.99
14960599--14960651	26	2.0	26	86	13	74	24	16	26	32	1.97
14961467--14961519	26	2.0	26	88	0	79	30	18	22	28	1.98
14958102--14962281	868	4.7	880	85	6	5221	25	23	24	26	2.00
14963138--14963189	26	2.0	26	88	0	77	28	15	25	30	1.96
14962314--14967516	898	6.0	871	81	8	5520	25	24	25	25	2.00
14966593--14966643	26	2.0	26	96	0	93	29	21	23	25	1.99
14967492--14967568	26	3.0	26	100	0	154	31	11	23	33	1.91
14975646--14975698	26	2.0	26	96	0	97	26	15	26	32	1.95
14976541--14976593	26	2.0	26	88	0	79	28	16	24	30	1.97
14974769--14990702	895	17.9	901	84	4	19381	25	23	24	25	2.00
14977444--14977496	26	2.0	26	85	0	70	28	16	22	32	1.96
14979194--14979244	26	2.0	26	92	0	84	31	19	23	25	1.98
14980091--14980169	26	3.0	26	94	0	140	27	18	25	27	1.98
14981018--14981070	26	2.0	26	88	0	79	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14981921--14981973	26	2.0	26	92	0	88	26	16	26	30	1.97
14982811--14982863	26	2.0	26	88	0	79	22	18	28	30	1.98
14983703--14983752	26	1.9	26	100	0	100	28	16	26	30	1.96
14985476--14985529	26	2.1	26	96	0	99	27	22	24	25	2.00
14986348--14986400	26	2.0	26	92	0	88	28	18	24	28	1.98
14987230--14987282	26	2.0	26	92	0	88	26	16	26	30	1.97
14988105--14988158	26	2.1	26	89	6	83	29	20	22	27	1.98
14978301--14990652	881	13.9	879	83	5	13436	25	24	24	25	2.00
14988983--14989034	26	2.0	26	88	0	77	30	17	23	28	1.97
14989862--14989917	26	2.2	26	93	0	94	28	17	23	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131