genome.fa.s2.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  14  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3612945--3612993	16	3.1	15	82	8	62	51	6	2	40	1.38
3613071--3613103	15	2.1	16	88	5	50	48	3	9	39	1.50
3616558--3616586	2	14.5	2	100	0	58	0	0	48	51	1.00
3618055--3618102	24	2.0	24	84	8	62	58	6	0	35	1.23
3621233--3621294	3	21.3	3	77	12	67	27	4	1	66	1.21
3621235--3621291	14	4.0	14	86	2	78	26	5	1	66	1.22
3622056--3622139	5	15.8	5	74	14	53	16	2	8	72	1.19
3622133--3622182	18	2.8	17	82	14	57	36	2	6	56	1.36
3625144--3625220	35	2.2	35	88	0	109	36	12	3	46	1.61
3630347--3630396	20	2.7	20	80	20	63	38	6	0	56	1.24
3631984--3632379	210	1.9	209	82	4	503	36	14	14	34	1.88
3632497--3633043	60	8.9	60	69	11	225	37	11	12	38	1.80
3632567--3632868	122	2.5	119	80	6	331	37	12	14	35	1.84
3632567--3632919	122	2.9	122	79	5	324	37	11	13	36	1.82
3633937--3633971	18	2.0	18	88	5	54	22	5	5	65	1.36
3635138--3635267	43	3.0	43	75	4	120	46	16	10	25	1.79
3636351--3636384	15	2.2	16	94	5	61	11	8	0	79	0.94
3636351--3636386	9	4.3	9	80	20	51	11	8	0	80	0.90
3642594--3642663	3	24.0	3	82	5	90	31	2	2	62	1.24
3643151--3643175	12	2.1	12	100	0	50	24	0	20	56	1.43
3643481--3643518	19	2.0	19	94	0	67	15	2	2	78	0.97
3643605--3643688	37	2.4	35	80	13	100	59	8	2	29	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3643605--3643687	36	2.4	34	84	9	98	60	8	2	28	1.39
3643630--3643704	36	2.2	32	84	13	98	60	6	2	30	1.37
3643716--3643769	17	3.2	16	77	10	63	57	14	0	27	1.38
3643713--3643773	17	3.6	17	75	16	54	59	14	0	26	1.36
3647718--3647755	19	2.0	19	94	0	67	76	5	15	2	1.08
3649284--3649613	119	2.8	119	78	3	326	21	25	11	41	1.86
3649318--3649674	120	3.0	118	79	5	326	21	24	12	42	1.87
3649410--3649697	119	2.4	119	81	6	280	21	26	12	40	1.88
3649961--3650106	3	52.0	3	70	13	105	34	3	2	59	1.28
3649962--3650104	29	4.8	29	75	18	118	34	3	2	59	1.29
3649961--3650105	20	7.0	20	71	18	70	34	3	2	59	1.29
3650580--3650607	12	2.3	12	100	0	56	25	0	21	53	1.46
3650991--3651065	33	2.2	34	88	4	107	65	9	2	22	1.35
3651100--3651132	17	1.9	17	93	0	57	60	9	0	30	1.27
3651024--3651224	94	2.1	95	90	3	318	56	6	2	34	1.40
3651175--3651235	19	3.2	19	79	4	61	63	3	1	31	1.20
3664776--3664807	2	16.5	2	93	6	57	50	0	0	50	1.00
3681906--3681956	10	5.1	10	76	6	50	56	0	1	41	1.10
3681905--3681956	20	2.6	20	79	8	61	57	0	1	40	1.10
3682039--3682128	39	2.2	43	80	13	116	32	2	3	62	1.24
3682063--3682138	10	7.6	10	68	16	50	38	1	2	57	1.21
3682268--3682312	17	2.6	17	83	13	65	28	0	4	66	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3688457--3688758	61	4.9	62	84	9	390	32	13	9	45	1.75
3688457--3688758	123	2.5	122	90	3	450	32	13	9	45	1.75
3688769--3688808	20	2.0	21	90	5	64	72	0	5	22	1.04
3688817--3688872	26	2.1	27	83	3	69	69	7	1	21	1.22
3689346--3689404	31	1.9	31	86	6	84	30	20	22	27	1.98
3689848--3689881	17	1.9	18	88	5	52	79	2	2	14	0.97
3690624--3690665	16	2.6	16	81	11	50	40	11	2	45	1.54
3692215--3692241	3	9.0	3	100	0	54	66	0	0	33	0.92
3694442--3694485	19	2.3	19	84	7	54	29	2	2	65	1.16
3701062--3701087	1	26.0	1	100	0	52	0	0	0	100	0.00
3700905--3701502	308	2.0	297	92	4	993	33	17	14	33	1.91
3702645--3702698	24	2.2	24	77	9	56	33	3	1	61	1.25
3704227--3704275	25	1.9	26	87	4	73	59	12	4	24	1.50
3704268--3704349	36	2.3	36	93	0	137	50	7	9	32	1.63
3704483--3704535	17	3.3	15	80	17	54	73	3	0	22	0.99
3705427--3705495	19	3.7	19	84	3	77	69	5	2	21	1.23
3705428--3705530	6	16.7	6	76	6	71	66	6	2	23	1.29
3705428--3705530	25	4.2	24	76	8	91	66	6	2	23	1.29
3705797--3705904	43	2.5	43	89	4	155	44	15	10	29	1.80
3711789--3711829	18	2.3	18	87	8	57	26	4	0	68	1.10
3718049--3718101	21	2.5	21	87	0	70	64	7	5	22	1.41
3719171--3719288	20	6.1	20	66	21	63	50	10	4	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3719271--3719365	25	3.7	27	76	17	78	53	9	4	32	1.52
3719336--3719379	23	1.9	23	95	0	79	61	9	2	27	1.38
3719395--3719443	20	2.4	21	83	10	57	51	12	6	30	1.64
3720588--3720625	19	2.0	20	94	5	69	5	15	0	78	0.91
3720650--3720699	13	3.9	13	78	5	57	66	10	0	24	1.22
3720643--3720699	19	3.0	19	85	10	80	66	10	0	22	1.22
3720632--3720734	6	16.7	6	72	6	53	65	8	2	23	1.35
3721116--3721156	16	2.6	16	82	17	50	68	2	2	26	1.15
3723429--3723498	34	2.0	35	83	8	90	7	22	2	67	1.29
3723431--3723491	17	3.6	17	70	14	54	4	19	3	72	1.18
3723435--3723514	35	2.3	34	81	16	85	8	23	2	65	1.34
3732129--3732157	13	2.2	13	100	0	58	31	0	0	68	0.89
3755677--3755805	62	2.1	63	83	4	163	23	10	6	58	1.55
3756237--3756308	25	2.8	24	78	16	74	41	9	4	44	1.56
3756004--3756348	184	1.9	186	82	7	441	37	10	4	46	1.60
3756375--3756417	20	2.3	19	84	15	54	76	4	0	18	0.95
3756674--3756718	12	3.7	13	80	14	51	0	40	0	60	0.97
3757360--3757396	17	2.2	17	95	0	65	45	18	5	29	1.72
3757414--3757512	51	1.9	51	89	0	153	53	17	6	23	1.65
3757465--3757764	41	7.4	41	83	3	345	46	19	9	25	1.78
3757468--3757761	81	3.6	81	85	1	374	46	19	8	24	1.78
3757465--3757764	122	2.5	122	84	6	374	46	19	9	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3758758--3758854	10	9.4	10	75	15	83	4	12	1	82	0.86
3758774--3758847	25	2.8	25	79	18	62	2	12	1	83	0.81
3758774--3758853	26	3.2	24	82	8	88	2	11	1	85	0.77
3758774--3758853	1	80.0	1	74	0	52	2	11	1	85	0.77
3758848--3758886	17	2.2	17	86	9	51	28	10	10	51	1.68
3764540--3764565	2	13.0	2	100	0	52	50	0	50	0	1.00
3772387--3772455	17	3.9	19	75	17	60	63	4	1	30	1.22
3772406--3772484	27	2.9	27	78	1	86	62	7	2	27	1.36
3772656--3772720	27	2.5	27	85	14	84	29	1	4	64	1.22
3772677--3772718	9	4.7	9	80	11	50	26	0	4	69	1.08
3772662--3772710	18	2.7	17	81	6	53	26	2	2	69	1.10
3772677--3772731	27	2.0	27	82	10	67	32	0	3	63	1.12
3772717--3772764	16	3.1	15	82	11	60	41	2	0	56	1.11
3772779--3772875	34	2.8	33	77	13	81	43	2	3	51	1.29
3772831--3772902	34	2.2	32	80	9	74	40	2	2	54	1.29
3772943--3772988	21	2.2	20	84	3	56	21	0	4	73	1.00
3772943--3773027	9	9.3	9	73	12	50	23	1	4	70	1.13
3773007--3773079	38	2.0	37	91	5	121	34	2	0	63	1.09
3773008--3773096	38	2.4	36	86	3	115	34	3	0	61	1.12
3774033--3774072	15	2.5	16	88	8	55	62	0	0	37	0.95
3782930--3782964	2	17.5	2	100	0	70	48	0	0	51	1.00
3786708--3786780	29	2.5	30	84	10	89	42	9	0	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3789241--3789308	35	1.9	36	87	3	102	23	23	25	27	2.00
3796263--3796410	52	2.8	51	85	6	199	27	18	7	46	1.75
3796707--3796784	25	3.1	25	83	3	95	24	25	2	47	1.65
3797339--3797495	52	3.0	52	84	0	206	28	21	5	43	1.75
3797520--3797560	11	3.7	11	80	0	55	51	21	0	26	1.48
3797520--3797564	22	2.0	23	95	4	83	48	20	0	31	1.49
3802460--3802510	22	2.3	21	83	12	59	54	0	0	45	0.99
3804054--3804117	31	2.1	31	82	8	78	34	1	1	62	1.14
3807320--3807364	4	11.8	4	86	9	67	28	0	20	51	1.48
3807319--3807366	18	2.8	18	90	6	73	31	0	18	50	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131