genome.fa.s2.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  50  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10306812--10307170	70	5.1	70	70	7	185	47	13	18	20	1.81
10307058--10307146	35	2.5	36	73	8	85	50	12	17	19	1.77
10307098--10307286	35	5.4	34	70	8	130	45	13	23	17	1.84
10307117--10307286	70	2.4	70	80	5	175	44	13	24	18	1.85
10307398--10307509	35	3.2	34	75	5	116	48	8	16	25	1.76
10320150--10320205	17	3.2	17	77	7	51	76	0	10	12	1.01
10323632--10323680	3	16.3	3	100	0	98	65	0	0	34	0.93
10324167--10324205	19	2.1	19	100	0	78	28	10	15	46	1.78
10324818--10325075	134	1.9	134	85	4	360	39	15	12	33	1.84
10331061--10331167	10	11.4	10	68	16	52	61	5	2	29	1.33
10331061--10331114	19	2.7	20	88	5	74	62	5	0	31	1.18
10331080--10331168	36	2.5	37	77	5	92	62	4	3	29	1.31
10331309--10331353	21	2.2	21	92	4	74	55	2	4	37	1.32
10331580--10331654	36	2.2	34	83	9	100	36	6	2	54	1.41
10331791--10331857	11	6.2	11	73	16	50	32	0	8	58	1.29
10331772--10331842	21	3.5	20	75	9	63	35	0	7	57	1.26
10331772--10331849	31	2.5	31	81	10	88	33	0	7	58	1.26
10331772--10331852	20	4.0	21	73	12	62	34	0	8	56	1.30
10333202--10333255	23	2.4	22	87	9	81	53	1	12	31	1.50
10334820--10334857	10	3.4	11	85	14	51	52	0	0	47	1.00
10339085--10339129	16	2.8	15	83	12	54	64	2	0	33	1.06
10339740--10339787	14	3.5	13	77	11	51	50	14	10	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10339807--10339866	26	2.3	26	82	5	77	51	23	3	21	1.62
10339795--10339877	12	6.7	12	71	15	53	50	25	4	19	1.67
10341473--10341559	22	3.7	22	72	22	61	21	0	11	66	1.23
10341475--10341534	25	2.4	25	83	10	77	20	0	11	68	1.20
10350998--10351053	8	6.5	8	75	22	51	83	0	7	8	0.80
10352013--10352465	105	4.3	105	76	6	364	18	19	15	47	1.83
10352089--10352480	210	1.9	210	81	4	486	17	20	14	47	1.83
10352676--10352700	12	2.1	12	100	0	50	84	16	0	0	0.63
10353040--10353076	17	2.2	17	95	0	65	59	5	0	35	1.20
10353057--10353107	16	3.1	16	75	16	50	64	1	5	27	1.27
10355106--10355160	23	2.4	24	79	11	62	63	0	3	32	1.12
10355330--10355388	26	2.3	26	81	0	73	54	15	1	28	1.51
10356664--10356706	18	2.6	16	82	13	59	51	2	0	46	1.13
10356770--10356802	16	2.0	17	88	5	50	39	0	3	57	1.14
10358104--10358685	303	1.9	304	87	1	864	32	13	16	37	1.88
10361941--10362006	25	2.6	25	80	0	78	39	30	12	18	1.87
10362001--10362311	80	3.9	81	81	4	328	43	20	9	26	1.82
10362001--10362311	160	2.0	158	83	3	401	43	20	9	26	1.82
10371553--10371583	14	2.2	14	94	0	53	54	3	0	41	1.16
10371670--10371762	32	3.0	30	73	12	89	38	5	5	50	1.48
10371806--10371846	17	2.5	17	85	14	59	41	2	0	56	1.13
10374733--10374768	2	18.5	2	94	5	65	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10380903--10380932	16	1.9	16	93	6	53	20	13	16	50	1.78
10381288--10381321	16	2.1	16	88	0	50	44	20	14	20	1.87
10387975--10388010	17	2.1	18	89	5	56	2	19	0	77	0.88
10387970--10388053	31	2.7	31	77	14	93	2	27	0	70	1.00
10397407--10397453	14	2.9	17	84	12	55	53	0	4	42	1.20
10404501--10404607	39	2.7	39	78	7	108	37	16	9	36	1.81
10404495--10404939	40	11.1	40	73	10	255	38	15	10	35	1.82
10406962--10406997	18	2.0	18	88	0	54	30	25	5	38	1.78
10406730--10407209	252	1.9	249	87	3	712	39	12	4	43	1.62
10407355--10407441	43	2.0	43	90	0	138	35	17	11	35	1.86
10409292--10409317	7	3.7	7	100	0	52	11	15	0	73	1.11
10412231--10412261	7	4.4	7	95	0	53	3	0	51	45	1.17
10413436--10413507	34	2.1	35	84	2	92	34	9	16	38	1.82
10416907--10416954	18	2.5	19	80	13	53	70	8	0	20	1.12
10417148--10417554	119	3.4	119	81	1	422	42	16	22	18	1.88
10417749--10417792	17	2.5	18	81	3	54	40	18	9	31	1.81
10417897--10418056	68	2.3	69	87	6	236	40	13	16	30	1.87
10417897--10418083	68	2.7	68	84	6	234	38	14	17	29	1.90
10418011--10418141	51	2.6	51	71	11	133	37	12	21	29	1.89
10418356--10418499	72	2.0	72	98	0	279	31	7	26	34	1.85
10419120--10419179	23	2.6	24	76	23	67	3	8	5	83	0.90
10422995--10423036	21	2.0	22	85	4	59	28	2	2	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10422993--10423038	23	2.0	23	91	8	76	26	4	2	67	1.21
10424749--10424796	18	2.5	19	80	13	53	70	8	0	20	1.12
10425163--10425425	140	1.9	140	81	3	323	43	14	7	33	1.74
10431797--10431828	13	2.6	12	90	9	55	34	0	18	46	1.49
10431749--10432194	186	2.4	187	86	4	621	34	11	10	42	1.77
10433089--10433128	12	3.3	12	82	0	53	25	7	30	37	1.83
10437874--10437910	6	6.2	6	93	0	65	81	0	2	16	0.81
10441564--10441588	13	1.9	13	100	0	50	44	0	0	56	0.99
10443982--10444009	2	14.0	2	100	0	56	0	50	0	50	1.00
10445351--10445409	15	3.6	15	79	20	73	32	5	1	61	1.28
10458350--10458403	9	6.0	9	76	20	51	75	1	5	16	1.07
10458364--10458432	26	2.7	25	81	4	84	75	2	5	15	1.12
10458425--10458493	29	2.4	28	75	15	70	56	4	7	31	1.46
10458769--10458802	16	2.1	16	94	0	59	11	2	0	85	0.71
10458814--10458843	11	2.7	11	100	0	60	16	0	13	70	1.18
10458861--10458902	18	2.5	17	81	11	50	26	4	7	61	1.42
10459144--10459188	20	2.3	20	88	3	65	15	0	13	71	1.15
10459192--10459240	19	2.6	19	81	9	55	18	4	6	71	1.23
10463765--10463795	16	1.9	16	93	0	53	48	19	0	32	1.49
10470831--10470877	3	16.0	3	78	12	53	70	0	2	27	0.99
10470829--10470876	17	2.8	17	84	9	62	72	0	2	25	0.95
10470828--10470906	19	4.0	19	77	9	61	70	3	3	21	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10473842--10473907	31	2.2	30	83	8	80	68	12	3	16	1.33
10474333--10474417	3	28.3	3	92	4	145	68	0	1	30	0.97
10474726--10475363	119	5.4	119	81	5	617	44	14	22	18	1.86
10474721--10475366	238	2.7	236	81	2	749	43	14	22	18	1.87
10475576--10475676	34	3.0	34	79	1	114	36	18	16	27	1.93
10476221--10476261	6	6.8	6	86	10	57	12	0	2	85	0.70
10476220--10476268	25	2.0	25	84	8	64	12	0	4	83	0.77
10476222--10476260	17	2.2	18	90	4	62	12	0	2	84	0.72
10486527--10486597	5	14.6	5	75	11	67	71	1	5	21	1.14
10487570--10487654	26	3.3	26	76	0	89	31	21	27	20	1.97
10487578--10487676	52	1.9	52	87	0	144	32	24	25	18	1.97
10487590--10487678	26	3.4	26	78	3	90	33	24	25	15	1.95
10497594--10497621	12	2.3	12	100	0	56	42	32	7	17	1.77
10501126--10501159	7	4.6	7	92	7	50	11	2	2	82	0.89
10501126--10501159	15	2.3	15	90	10	52	11	2	2	82	0.89
10506517--10506605	40	2.2	40	87	0	124	38	15	11	34	1.83
10506966--10507009	23	2.0	21	91	8	70	86	2	9	2	0.75
10507926--10507983	22	2.6	22	80	20	68	36	24	10	29	1.88
10507934--10507993	22	2.7	22	82	5	68	33	21	13	31	1.92
10508331--10508531	66	3.1	66	76	6	149	32	17	14	34	1.91
10508160--10508475	98	3.3	97	84	4	390	35	18	12	32	1.89
10508387--10508531	66	2.2	66	83	2	184	29	17	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10508287--10508531	33	7.5	33	70	10	126	32	18	14	34	1.91
10508569--10508633	34	1.9	34	93	0	112	29	6	23	41	1.78
10508560--10508645	34	2.5	34	84	3	111	29	5	24	40	1.78
10508741--10508813	34	2.1	34	92	0	119	34	9	19	36	1.84
10508757--10508877	34	3.5	34	76	6	100	28	6	21	43	1.77
10508925--10508981	22	2.6	22	88	0	87	43	10	12	33	1.76
10509052--10509137	34	2.5	34	82	0	100	31	10	17	40	1.83
10510912--10510938	7	3.9	7	100	0	54	11	0	0	88	0.50
10511526--10511554	8	3.8	8	95	4	51	93	6	0	0	0.36
10512267--10512406	3	48.3	3	74	11	78	26	2	9	61	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131