genome.fa.s2.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  64  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12522786--12528934	902	6.9	901	87	2	8269	25	24	24	25	2.00
12526352--12526409	26	2.2	26	90	3	89	27	22	22	27	1.99
12527260--12527312	26	2.0	26	88	0	79	32	24	16	26	1.97
12528147--12528202	26	2.2	26	93	0	94	32	25	16	26	1.96
12528176--12529632	704	2.1	699	89	1	2229	26	24	23	25	2.00
12529738--12529790	26	2.0	26	96	0	97	28	24	20	26	1.99
12528879--12534874	904	6.8	888	81	7	6727	25	24	23	25	2.00
12531509--12531561	26	2.0	26	92	0	88	28	24	18	28	1.98
12532415--12532466	25	2.1	25	96	0	95	28	21	19	30	1.97
12533261--12533313	26	2.0	26	96	0	97	26	24	22	26	2.00
12534911--12537811	894	3.3	885	83	7	3652	25	24	24	25	2.00
12537531--12537583	26	2.0	26	96	0	97	28	26	18	26	1.98
12538017--12538069	26	2.0	26	89	7	81	28	26	22	22	1.99
12539663--12541854	720	3.1	713	87	3	3149	26	23	23	25	2.00
12541958--12542010	26	2.0	26	88	0	79	28	22	20	28	1.99
12545999--12546048	26	1.9	26	95	0	91	24	28	20	28	1.99
12547045--12547094	26	1.9	26	91	0	82	28	24	18	30	1.97
12548609--12548659	26	2.0	26	88	7	77	29	29	13	27	1.94
12550175--12550251	26	3.0	26	100	0	154	25	27	19	27	1.99
12549330--12551559	897	2.5	882	85	5	2873	24	24	24	25	2.00
12553278--12553308	4	7.8	4	92	0	53	0	70	25	3	1.02
12553969--12554325	171	2.1	171	86	1	500	19	31	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12554377--12554427	26	2.0	26	92	0	84	31	25	13	29	1.94
12555283--12555335	26	2.0	26	85	0	70	30	24	16	28	1.97
12556188--12556238	26	2.0	26	100	0	102	27	23	21	27	1.99
12554131--12557816	893	4.1	895	86	4	4738	25	25	24	25	2.00
12557862--12562933	865	5.7	865	84	5	5923	26	24	23	25	2.00
12561242--12561289	25	1.9	25	95	0	87	25	27	22	25	2.00
12562145--12562197	26	2.0	26	92	0	88	30	24	18	26	1.98
12559431--12562941	904	3.9	900	87	3	4940	26	25	23	25	2.00
12562171--12563630	714	2.0	715	89	1	2205	27	24	22	25	2.00
12563759--12563811	26	2.0	26	88	0	79	30	24	16	28	1.97
12564662--12564713	26	2.0	26	88	0	77	26	26	17	28	1.97
12562886--12565444	899	2.8	890	87	4	3489	26	24	23	25	2.00
12564688--12566147	717	2.0	711	88	3	2144	27	23	22	26	2.00
12566276--12566328	26	2.0	26	92	0	88	28	26	20	24	1.99
12567164--12567215	26	2.0	26	88	0	77	28	19	23	28	1.98
12568041--12568093	26	2.0	26	92	0	88	30	26	16	26	1.97
12567288--12575032	893	8.7	894	74	11	5845	26	24	23	25	2.00
12569769--12569821	26	2.0	26	96	0	97	28	26	18	26	1.98
12570162--12570443	142	2.0	143	85	2	388	41	15	15	27	1.88
12570808--12570860	26	2.0	26	92	0	88	26	22	20	30	1.98
12571702--12571754	26	2.0	26	96	0	97	28	26	18	26	1.98
12573425--12573477	26	2.0	26	96	0	97	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12574454--12576474	717	2.9	700	87	3	2801	27	23	22	27	1.99
12576581--12576633	26	2.0	26	96	0	97	26	24	22	26	2.00
12575699--12581283	866	6.3	862	83	6	6062	24	24	24	25	2.00
12577477--12581283	902	4.3	893	85	4	4958	24	24	24	25	2.00
12580113--12580165	26	2.0	26	92	0	88	28	24	18	28	1.98
12581010--12581062	26	2.0	26	88	0	79	28	20	20	30	1.98
12581282--12581317	12	2.8	13	87	12	56	16	33	11	38	1.84
12581891--12584473	718	3.6	716	87	2	3657	27	24	22	26	2.00
12584603--12584655	26	2.0	26	88	0	79	26	24	18	30	1.98
12587823--12587873	26	2.0	26	96	0	93	29	25	17	27	1.98
12588706--12588758	26	2.0	26	96	0	97	26	24	20	28	1.99
12589600--12589652	26	2.0	26	82	7	63	30	24	16	28	1.97
12591376--12591428	26	2.0	26	88	0	79	28	24	18	28	1.98
12590510--12594221	905	4.1	907	85	3	4796	25	24	24	25	2.00
12593197--12593249	26	2.0	26	96	0	97	28	26	18	26	1.98
12594100--12594152	26	2.0	26	92	0	88	28	26	20	24	1.99
12594456--12594531	26	2.9	26	92	0	125	27	23	18	30	1.98
12597139--12597239	26	3.9	26	100	0	202	25	27	19	26	1.99
12598099--12600618	870	2.8	883	84	5	2944	26	24	23	25	2.00
12599838--12599890	26	2.0	26	88	0	79	28	22	22	26	1.99
12599864--12601322	710	2.0	711	88	2	2144	27	23	22	26	2.00
12601449--12601501	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12607211--12607238	11	2.5	11	100	0	56	17	39	32	10	1.84
12607989--12608041	26	2.0	26	92	0	88	28	24	18	28	1.98
12607103--12613681	884	7.4	897	84	5	8067	26	24	23	25	2.00
12608890--12608942	26	2.0	26	96	0	97	26	28	18	26	1.98
12609745--12609797	26	2.0	26	96	0	97	26	24	20	28	1.99
12612407--12612459	26	2.0	26	96	0	97	28	26	18	26	1.98
12613297--12613349	26	2.0	26	92	0	88	28	24	18	28	1.98
12610642--12613681	890	3.4	888	88	3	4289	25	24	24	26	2.00
12615665--12615717	26	2.0	26	96	0	97	26	28	18	26	1.98
12613680--12616453	901	3.1	892	87	3	3830	25	24	23	25	2.00
12615691--12618558	711	4.0	710	89	2	4263	26	23	23	26	2.00
12615691--12618558	707	4.0	710	89	2	4288	26	23	23	26	2.00
12620133--12621499	707	1.9	707	87	2	2001	27	23	22	26	1.99
12621686--12621738	26	2.0	26	92	0	88	28	26	20	24	1.99
12622586--12622636	26	2.0	26	96	0	93	27	27	15	29	1.96
12620832--12626018	901	5.8	903	86	4	6735	26	24	23	25	2.00
12625247--12625299	26	2.0	26	100	0	106	26	26	20	26	1.99
12625273--12626739	717	2.0	716	89	1	2269	27	24	22	25	2.00
12626795--12626844	26	1.9	26	91	0	82	26	24	20	30	1.98
12625992--12627616	829	2.0	829	86	2	2316	27	23	23	25	2.00
12627694--12627743	26	1.9	26	100	0	100	22	30	20	28	1.98
12628606--12628656	26	2.0	26	96	0	93	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12626794--12629911	906	3.4	901	85	4	4008	25	24	24	25	2.00
12629509--12629584	26	2.9	26	100	0	152	23	26	19	30	1.98
12630292--12630344	26	2.0	26	92	0	88	26	26	22	24	2.00
12630384--12630575	94	2.1	93	83	1	240	18	25	30	26	1.98
12631089--12631124	12	3.0	12	95	0	63	0	55	25	19	1.43
12631302--12631354	26	2.0	26	85	0	70	32	22	16	28	1.96
12634276--12636482	705	3.1	702	85	5	2924	26	23	23	26	2.00
12635762--12637367	889	1.8	887	87	3	2440	26	24	23	26	2.00
12636654--12638792	716	3.0	710	87	5	3029	26	23	23	25	2.00
12638903--12638953	26	2.0	26	100	0	102	25	27	19	27	1.99
12639798--12639847	26	1.9	26	95	0	91	30	24	14	32	1.94
12640696--12640748	26	2.0	26	100	0	106	26	26	20	26	1.99
12638026--12644044	898	6.8	900	84	4	7433	26	24	24	25	2.00
12645037--12645089	26	2.0	26	92	0	88	26	22	22	28	1.99
12645936--12645988	26	2.0	26	92	0	88	28	24	18	28	1.98
12646825--12646877	26	2.0	26	92	0	88	28	24	18	28	1.98
12648634--12648687	26	2.1	26	92	0	90	24	22	22	31	1.98
12649535--12649587	26	2.0	26	92	0	88	28	24	18	28	1.98
12644360--12649898	901	6.2	866	82	7	4784	25	24	24	25	2.00
12653043--12653095	26	2.0	26	96	0	97	28	26	18	26	1.98
12653704--12653756	26	2.0	26	88	0	79	30	24	18	26	1.98
12652551--12653868	661	2.0	658	84	4	1733	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12655798--12655850	26	2.0	26	92	0	88	28	24	20	26	1.99
12656993--12657045	26	2.0	26	85	0	70	30	22	18	28	1.98
12658768--12658820	26	2.0	26	96	0	97	28	26	18	26	1.98
12657893--12660075	900	2.4	901	88	2	3230	24	24	24	25	2.00
12666905--12666956	26	2.0	26	96	0	95	23	25	19	32	1.97
12667801--12667853	26	2.0	26	96	0	97	26	24	20	28	1.99
12667827--12669280	708	2.0	711	88	2	2125	27	24	22	26	2.00
12669403--12669455	26	2.0	26	92	0	88	28	24	18	28	1.98
12670305--12670357	26	2.0	26	96	0	97	28	24	20	26	1.99
12668537--12673668	892	5.7	893	88	2	7085	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131