genome.fa.s2.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  53  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10940717--10940750	14	2.4	14	90	0	50	0	8	2	88	0.62
10940717--10940749	13	2.4	14	90	5	50	0	9	3	87	0.63
10942842--10942884	21	2.0	22	86	4	61	37	0	0	62	0.95
10943966--10944010	22	2.1	21	84	8	56	53	0	11	35	1.37
10944615--10944648	13	2.6	13	86	13	52	52	0	0	47	1.00
10946204--10946254	18	2.8	18	79	5	50	60	3	5	29	1.38
10949216--10949275	32	1.9	31	93	3	102	31	5	25	38	1.77
10949216--10949286	32	2.2	32	87	2	99	30	5	26	36	1.80
10955138--10955180	13	3.2	13	80	3	50	60	2	2	34	1.22
10956507--10956548	5	8.4	5	100	0	84	80	0	0	19	0.70
10966688--10967090	59	6.7	60	82	8	466	33	12	6	46	1.68
10966688--10967090	120	3.4	119	85	9	541	33	12	6	46	1.68
10967209--10967253	22	2.1	22	92	8	76	80	4	0	15	0.87
10967215--10967244	9	3.3	9	95	0	51	80	6	0	13	0.91
10968533--10968799	43	6.1	42	80	8	259	37	21	16	24	1.93
10968657--10968799	41	3.4	42	90	3	216	37	20	16	25	1.93
10968533--10968799	132	2.0	129	87	5	385	37	21	16	24	1.93
10969331--10969388	22	2.6	23	78	8	66	34	18	8	37	1.82
10970458--10970513	20	2.7	21	78	18	71	7	17	0	75	1.03
10974439--10974834	58	6.7	58	76	11	331	34	13	7	43	1.73
10979876--10979933	26	2.2	27	84	3	73	55	6	5	32	1.49
10979963--10980005	20	2.2	20	87	8	61	51	20	4	23	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10982411--10982449	17	2.2	18	95	4	71	25	12	0	61	1.31
10983847--10983919	20	4.1	20	70	26	63	30	6	9	53	1.59
10983862--10983923	32	1.9	33	90	3	99	32	6	8	53	1.56
10983952--10983994	21	2.1	20	91	4	68	37	4	6	51	1.50
10983853--10983989	17	7.6	17	69	14	62	32	6	10	51	1.62
10983984--10984055	24	3.2	24	69	18	73	29	2	13	54	1.54
10983961--10984044	20	4.0	20	75	15	80	33	3	10	52	1.53
10983973--10984072	43	2.5	38	78	13	103	31	3	13	53	1.54
10985582--10986038	59	7.7	60	86	5	619	34	12	7	45	1.71
10985582--10986037	235	1.9	236	92	2	765	34	12	7	44	1.71
10986077--10986188	4	28.0	4	68	22	51	73	2	3	20	1.11
10986076--10986188	26	4.2	27	72	12	81	73	2	3	20	1.10
10986076--10986188	14	8.4	12	69	22	57	73	2	3	20	1.10
10986156--10986187	17	1.9	16	93	6	55	81	3	0	15	0.82
10986266--10986291	10	2.6	10	100	0	52	11	38	30	19	1.87
10987122--10987204	19	4.8	18	71	25	56	61	3	0	34	1.13
10987126--10987212	18	5.2	17	70	26	53	60	3	0	35	1.13
10987123--10987259	25	5.6	25	69	22	69	61	3	0	34	1.19
10988818--10988891	26	2.8	25	78	11	69	60	0	2	36	1.11
10988819--10988880	27	2.3	27	81	10	74	64	0	3	32	1.09
10996678--10996719	16	2.6	16	85	7	59	80	7	0	11	0.88
10997214--10997266	21	2.5	21	90	0	79	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10997463--10997492	14	2.2	13	94	5	51	73	0	3	23	0.98
10997469--10997507	19	2.1	19	86	13	55	71	0	5	23	1.05
11009272--11009469	80	2.5	80	82	3	220	35	10	11	42	1.75
11009517--11009790	43	6.4	43	78	3	196	33	11	14	40	1.82
11009432--11009756	83	3.9	85	75	6	232	32	11	14	41	1.82
11009518--11009786	129	2.1	126	79	5	281	33	11	14	40	1.83
11009773--11009807	17	2.1	17	94	0	61	51	2	0	45	1.16
11011355--11011396	14	2.9	14	89	3	66	69	2	0	28	1.01
11011406--11011453	17	2.7	19	84	12	50	70	0	6	22	1.09
11013656--11013685	14	2.1	15	93	6	53	66	0	16	16	1.25
11014270--11014416	32	4.6	32	73	11	113	47	9	21	21	1.79
11014275--11014415	64	2.2	64	78	5	149	46	9	21	21	1.80
11014507--11014576	32	2.2	32	81	0	77	51	10	20	18	1.74
11014507--11014711	64	3.2	64	70	9	157	44	10	26	18	1.82
11014677--11014741	32	2.0	32	90	0	103	46	10	24	18	1.81
11015985--11016055	7	9.7	7	76	13	54	14	8	0	77	0.98
11015972--11016034	28	2.3	27	81	10	74	11	12	0	76	1.03
11015995--11016056	17	3.9	17	79	12	78	14	8	0	77	0.98
11016364--11016405	20	2.2	19	87	8	59	4	14	2	78	1.01
11018733--11018782	3	16.7	3	95	0	91	32	0	2	66	1.03
11020617--11020657	6	6.8	6	100	0	82	0	17	51	31	1.46
11020708--11020748	16	2.8	16	85	10	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11021312--11021358	22	2.1	23	88	4	69	34	8	25	31	1.86
11021339--11021701	128	2.8	127	80	5	358	39	11	12	36	1.79
11021722--11021822	50	2.0	50	92	0	166	30	14	12	41	1.84
11021616--11021928	156	2.0	156	82	3	380	35	11	12	40	1.80
11022058--11022112	22	2.5	22	81	0	65	38	16	12	32	1.86
11026753--11026791	20	2.0	20	85	10	53	33	5	7	53	1.51
11027263--11027314	22	2.5	22	93	6	90	50	0	0	50	1.00
11028567--11028596	16	1.9	16	93	6	53	20	0	0	80	0.72
11028567--11028604	15	2.4	16	86	4	51	15	0	5	78	0.91
11030823--11030867	14	3.3	14	81	3	56	22	0	8	68	1.16
11032076--11032146	5	14.0	5	72	22	51	76	1	2	19	0.99
11032107--11032136	14	2.2	14	94	5	53	83	0	3	13	0.77
11032460--11032555	41	2.3	42	87	1	131	43	17	3	35	1.65
11032672--11032754	23	3.6	23	75	12	80	34	24	0	40	1.55
11032648--11032754	46	2.3	47	80	7	112	32	24	0	42	1.61
11033013--11033070	3	19.3	3	92	0	98	63	0	3	32	1.11
11034391--11034515	48	2.6	46	79	11	110	17	20	11	51	1.75
11036658--11036690	6	5.5	6	89	10	50	87	0	0	12	0.53
11036658--11036690	13	2.8	12	86	13	50	87	0	0	12	0.53
11036992--11037081	41	2.2	41	82	4	110	42	16	2	38	1.61
11037073--11037120	21	2.3	20	78	3	51	50	16	4	29	1.64
11037186--11037320	23	6.0	23	81	5	132	31	28	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11037186--11037320	69	2.0	67	83	2	171	31	28	2	38	1.69
11040783--11040832	14	3.7	14	78	10	59	28	10	16	46	1.78
11040794--11040835	12	3.3	12	81	12	57	28	9	11	50	1.70
11040783--11040835	26	2.0	26	96	0	97	28	9	15	47	1.76
11041954--11042012	30	1.9	31	82	3	75	28	15	0	55	1.40
11042018--11042062	23	2.0	23	91	8	74	75	0	2	22	0.91
11046456--11046538	42	2.0	42	87	0	121	44	10	6	38	1.64
11047534--11047572	20	2.0	19	90	5	60	48	0	0	51	1.00
11048512--11048558	21	2.2	21	88	0	67	46	8	0	44	1.33
11049012--11049061	10	4.9	10	82	4	55	34	2	4	60	1.27
11054121--11054159	17	2.2	17	86	9	51	58	10	17	12	1.61
11061899--11061969	32	2.2	32	92	2	117	16	8	16	57	1.63
11066718--11066983	145	1.8	145	97	0	505	19	1	31	46	1.60
11068273--11068636	142	2.5	142	81	7	391	38	13	14	33	1.86
11069116--11069336	35	6.3	34	69	10	97	55	11	12	20	1.67
11069688--11069721	11	2.8	12	86	13	52	8	0	5	85	0.75
11079063--11079095	17	2.1	16	88	11	50	6	24	0	69	1.10
11084630--11084676	20	2.5	19	89	6	69	36	6	8	48	1.59
11084658--11084717	16	3.7	16	81	2	75	30	8	11	50	1.68
11084650--11084713	32	2.0	33	90	3	103	31	7	9	51	1.62
11084650--11084728	32	2.5	32	81	8	90	31	7	10	50	1.64
11084742--11084790	17	2.9	17	81	0	53	30	4	8	57	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11084765--11084807	21	2.1	20	86	4	59	30	4	11	53	1.57
11084682--11084818	61	2.2	61	84	5	170	31	5	9	54	1.55
11084796--11085019	24	9.3	24	72	17	162	32	2	11	54	1.48
11084796--11084850	25	2.2	24	87	3	74	30	3	12	52	1.56
11084888--11085045	66	2.4	66	85	2	212	31	1	11	55	1.46
11085033--11085108	32	2.4	31	82	10	82	28	5	13	52	1.61
11085082--11085188	35	3.1	35	83	2	144	27	6	14	51	1.67
11086420--11087091	261	2.6	260	87	3	906	26	9	13	49	1.73
11086574--11087076	132	3.8	129	75	12	459	26	9	13	49	1.73
11088300--11088358	8	6.4	9	83	16	77	79	0	11	8	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131