genome.fa.s2.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  70  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13303791--13303846	26	2.2	26	87	6	78	30	23	17	28	1.97
13301663--13307962	898	7.0	898	85	3	8096	25	24	23	25	2.00
13304697--13304749	26	2.0	26	92	0	88	32	24	15	28	1.95
13305591--13305643	26	2.0	26	96	0	97	26	24	20	28	1.99
13306486--13306537	26	2.0	26	92	0	86	30	26	17	25	1.97
13308553--13308605	26	2.0	26	88	0	79	26	24	20	28	1.99
13310899--13310951	26	2.0	26	92	0	88	26	24	18	30	1.98
13311800--13311852	26	2.0	26	92	0	88	28	24	18	28	1.98
13310151--13314296	901	4.6	894	84	4	5103	26	24	23	25	2.00
13312700--13312752	26	2.0	26	85	0	70	33	16	18	30	1.94
13310160--13314296	896	4.6	889	84	4	5243	26	24	23	25	2.00
13313595--13313647	26	2.0	26	92	0	88	28	22	20	28	1.99
13315120--13315192	26	2.8	26	100	0	146	23	23	23	30	1.99
13315969--13316021	26	2.0	26	96	0	97	28	26	18	26	1.98
13316862--13316939	26	3.0	26	96	0	138	30	26	15	26	1.96
13317787--13317838	26	2.0	25	96	3	95	26	26	19	26	1.99
13319501--13319553	26	2.0	26	96	0	97	30	24	16	28	1.97
13326613--13326663	26	2.0	26	92	0	84	21	25	23	29	1.99
13327495--13327547	26	2.0	26	88	0	79	30	22	18	28	1.98
13318159--13322995	894	5.4	887	82	7	4661	26	24	23	25	2.00
13328385--13328437	26	2.0	26	92	0	88	28	24	18	28	1.98
13318159--13329183	890	12.4	888	81	7	11509	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13330868--13330946	26	3.0	26	94	0	131	26	22	21	29	1.99
13331796--13331868	26	2.8	26	97	0	137	26	26	20	27	1.99
13329997--13334530	923	5.0	924	80	7	4550	25	25	24	25	2.00
13330920--13335265	876	4.9	873	81	7	4811	25	24	24	25	2.00
13333478--13333540	26	2.4	26	97	0	117	20	26	39	12	1.89
13333611--13333663	26	2.0	26	96	0	97	26	24	20	28	1.99
13334457--13335898	710	2.0	706	89	2	2234	26	23	23	26	2.00
13336660--13338148	717	2.1	711	88	3	2222	25	24	23	26	2.00
13337406--13339558	895	2.4	898	86	2	2993	25	24	24	25	2.00
13340756--13345197	903	5.0	892	83	5	5334	25	24	23	25	2.00
13342556--13352151	903	10.9	852	71	14	4870	25	24	24	25	2.00
13347820--13347872	26	2.0	26	100	0	106	26	26	20	26	1.99
13348721--13348773	26	2.0	26	96	0	97	24	24	20	30	1.99
13346188--13352151	865	6.7	904	84	5	7300	26	24	23	25	2.00
13349631--13349681	26	2.0	26	92	0	84	31	25	15	27	1.96
13350491--13350544	26	2.1	26	96	0	99	25	25	20	27	1.99
13351362--13351414	26	2.0	26	96	0	97	32	26	15	26	1.95
13350467--13352050	868	1.8	867	88	2	2421	27	23	23	26	2.00
13351388--13352782	708	2.0	708	91	1	2269	27	23	23	26	2.00
13353625--13353674	26	1.9	26	100	0	100	24	24	22	30	1.99
13354483--13354535	26	2.0	26	92	0	88	26	22	20	30	1.98
13355206--13356068	428	2.0	428	83	3	1084	19	25	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13356405--13356457	26	2.0	26	100	0	106	26	26	20	26	1.99
13358183--13358233	26	2.0	26	92	7	86	27	29	15	27	1.96
13356220--13358981	899	3.1	890	85	4	3670	25	25	24	25	2.00
13358209--13360295	706	2.9	705	86	3	2799	27	23	22	26	2.00
13361940--13361992	26	2.0	26	96	0	97	26	24	20	28	1.99
13362835--13362887	26	2.0	26	96	0	97	28	26	18	26	1.98
13361638--13363604	903	2.2	888	87	3	2842	25	25	23	25	2.00
13365175--13366492	660	2.0	661	88	1	1987	28	23	22	25	1.99
13366699--13366749	26	2.0	26	92	0	84	29	23	15	31	1.95
13367605--13367657	26	2.0	26	96	0	97	26	24	20	28	1.99
13365837--13369277	856	3.9	891	86	4	4532	25	24	23	26	2.00
13372615--13372652	20	1.9	20	89	10	60	36	18	34	10	1.85
13372615--13372653	10	3.9	10	86	6	53	38	17	33	10	1.84
13375058--13375136	26	3.0	26	94	0	131	29	26	18	25	1.98
13375978--13376030	26	2.0	26	96	0	97	28	26	18	26	1.98
13376004--13377477	709	2.1	714	87	2	2124	27	24	23	25	2.00
13376683--13379240	873	2.9	872	86	5	3529	25	25	24	25	2.00
13379808--13382978	719	4.4	711	86	3	4271	26	23	23	26	2.00
13383108--13383157	26	1.9	26	100	0	100	24	28	20	28	1.99
13385586--13385638	26	2.0	26	96	0	97	28	26	18	26	1.98
13386473--13386526	26	2.1	26	85	0	72	31	25	14	27	1.95
13384717--13388115	899	3.8	879	86	5	4335	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13387353--13389544	708	3.1	709	88	2	3267	27	24	22	25	2.00
13389655--13389707	26	2.0	26	92	0	88	30	20	18	30	1.97
13389681--13396167	719	9.1	715	80	8	6331	26	24	23	25	2.00
13396282--13396331	26	1.9	26	95	0	91	28	26	18	28	1.98
13395411--13397034	884	1.8	882	86	3	2353	26	23	24	26	2.00
13396451--13397747	705	1.8	709	87	2	1924	28	23	21	26	1.99
13397872--13397924	26	2.0	26	96	0	97	28	26	18	26	1.98
13397007--13400348	878	3.8	888	84	5	4228	26	24	23	25	2.00
13401079--13401131	26	2.0	26	92	0	88	24	24	20	30	1.99
13403531--13403560	4	7.5	4	92	0	51	3	73	23	0	0.98
13403741--13403793	26	2.0	26	96	0	97	26	24	20	28	1.99
13404642--13404694	26	2.0	26	88	0	79	24	24	18	32	1.97
13402013--13408993	868	7.8	867	81	8	7371	25	24	24	25	2.00
13406424--13406476	26	2.0	26	89	7	81	30	24	16	28	1.97
13407317--13407368	26	2.0	26	96	0	95	26	25	19	28	1.98
13405547--13408993	908	3.8	901	85	4	4622	25	24	24	25	2.00
13408971--13409045	26	2.9	26	89	0	123	26	22	21	29	1.99
13409885--13409935	26	2.0	26	96	0	93	29	23	17	29	1.97
13410102--13412184	734	2.9	715	82	5	2568	27	24	22	25	2.00
13411448--13413972	893	2.8	891	89	2	3680	26	24	23	25	2.00
13413210--13413262	26	2.0	26	92	0	88	28	22	20	28	1.99
13414817--13414869	26	2.0	26	88	0	79	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13415697--13415748	26	2.0	25	92	3	86	30	25	15	28	1.96
13413867--13419062	887	6.0	864	83	5	6072	26	24	23	25	2.00
13418243--13419778	703	2.2	701	87	1	2182	26	24	22	26	2.00
13419882--13419960	26	3.0	26	98	0	149	27	26	18	26	1.98
13421538--13421590	26	2.0	26	92	0	88	28	24	18	28	1.98
13422435--13422486	25	2.0	26	85	3	70	28	21	21	28	1.98
13423093--13423145	26	2.0	26	92	0	88	28	24	18	28	1.98
13423119--13425292	705	3.1	702	84	3	2854	26	23	23	25	2.00
13425405--13425455	26	2.0	26	92	0	84	25	21	19	33	1.97
13426305--13426357	26	2.0	26	96	0	97	28	24	20	26	1.99
13424539--13427330	900	3.1	890	85	4	3664	25	25	24	25	2.00
13427708--13427760	26	2.0	26	92	0	88	28	24	18	28	1.98
13426851--13427844	513	2.0	501	85	4	1350	23	27	25	24	2.00
13428842--13428889	25	1.9	25	86	0	69	12	45	20	20	1.83
13428940--13428992	26	2.0	26	100	0	106	26	26	20	26	1.99
13429836--13429888	26	2.0	26	96	0	97	28	26	18	26	1.98
13430747--13430796	26	1.9	26	91	0	82	28	24	18	30	1.97
13428867--13431884	898	3.4	900	87	2	4304	25	25	24	24	2.00
13431642--13431694	26	2.0	26	100	0	106	26	26	20	26	1.99
13433172--13433223	26	2.0	26	96	0	95	32	26	13	26	1.94
13434073--13434125	26	2.0	26	88	0	79	26	24	18	30	1.98
13431884--13442162	905	11.3	900	77	8	8791	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13435864--13435916	26	2.0	26	92	0	88	28	24	18	28	1.98
13437666--13437718	26	2.0	26	88	0	79	28	22	18	30	1.98
13439615--13439667	26	2.0	26	96	0	97	28	26	18	26	1.98
13438557--13442085	889	4.0	887	84	5	4333	25	24	24	25	2.00
13443904--13443956	26	2.0	26	88	0	79	26	24	22	26	2.00
13442134--13444693	903	2.8	900	86	3	3539	25	24	23	25	2.00
13445224--13446293	558	1.9	564	88	3	1614	26	23	22	27	2.00
13447359--13447410	26	2.0	26	96	0	95	26	25	19	28	1.98
13448261--13448313	26	2.0	26	100	0	106	26	26	20	26	1.99
13449159--13449209	26	2.0	26	100	0	102	27	27	17	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131