genome.fa.s2.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  79  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14559096--14559146	26	2.0	26	92	0	84	25	17	25	31	1.97
14559328--14559361	4	8.5	4	86	0	50	2	23	70	2	1.15
14560561--14560613	26	2.0	26	92	0	88	26	20	26	26	1.99
14562168--14562220	26	2.0	26	96	0	97	28	20	24	26	1.99
14563053--14563105	26	2.0	26	88	0	79	28	16	24	30	1.97
14563933--14564056	12	9.5	13	72	25	77	29	1	4	65	1.20
14563933--14563986	3	18.0	3	85	14	76	29	0	1	68	1.00
14564007--14564062	21	2.7	21	75	10	62	35	0	5	58	1.21
14564013--14564050	16	2.4	16	86	4	51	31	0	7	60	1.25
14564911--14564935	10	2.5	10	100	0	50	28	40	32	0	1.57
14565069--14565108	17	2.4	16	84	8	53	22	5	0	72	1.04
14565097--14565146	23	2.3	22	77	19	52	14	8	2	76	1.10
14565179--14565505	58	5.7	56	86	5	451	44	8	13	34	1.73
14565179--14565505	117	2.9	113	88	4	469	44	8	13	34	1.73
14569368--14569406	20	2.0	20	89	0	60	66	0	23	10	1.22
14569393--14569433	13	3.2	12	83	10	55	82	2	14	0	0.76
14569392--14569437	16	2.9	15	81	18	58	82	2	15	0	0.76
14569393--14569454	25	2.3	26	83	13	72	79	1	16	3	0.95
14570665--14570764	41	2.4	41	91	3	157	23	19	20	38	1.94
14570750--14570782	16	2.1	16	100	0	66	27	24	6	42	1.78
14570709--14570823	58	2.0	57	93	3	196	23	20	16	39	1.92
14570766--14570930	41	4.0	41	86	0	231	22	17	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14570668--14570861	99	2.0	98	87	5	284	22	19	19	39	1.93
14570942--14571001	1	60.0	1	76	0	57	88	11	0	0	0.52
14570942--14571001	10	6.1	10	84	11	88	88	11	0	0	0.52
14570950--14571001	8	6.8	8	86	4	72	88	11	0	0	0.52
14570942--14571001	19	3.2	19	90	4	95	88	11	0	0	0.52
14570944--14571001	30	1.9	30	93	6	100	87	12	0	0	0.53
14571205--14571256	16	3.3	17	80	20	60	26	1	3	67	1.18
14571281--14571324	19	2.3	18	82	17	54	36	0	2	61	1.09
14571904--14571955	20	2.6	20	90	0	77	44	25	17	13	1.85
14572351--14572390	17	2.4	16	84	8	53	22	5	0	72	1.04
14572377--14572424	17	2.8	17	78	9	53	12	6	2	79	1.01
14572377--14572434	14	4.2	14	76	8	57	13	6	1	77	1.05
14572400--14572439	14	2.5	17	73	23	50	15	10	0	75	1.05
14572461--14572846	57	6.7	57	87	4	553	43	9	12	34	1.75
14572444--14572846	116	3.5	115	88	5	609	44	9	12	33	1.74
14572442--14572846	173	2.3	171	86	5	562	44	9	12	34	1.74
14575780--14575830	26	2.0	26	92	0	84	29	17	23	29	1.97
14575460--14576201	371	2.0	372	88	2	1109	25	27	24	23	2.00
14576151--14576203	26	2.0	26	92	0	88	26	16	26	30	1.97
14578624--14578676	26	2.0	26	92	0	88	26	20	24	28	1.99
14577035--14584192	903	8.1	894	85	4	8976	25	24	24	26	2.00
14579519--14579569	26	2.0	26	92	0	84	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14580422--14580474	26	2.0	26	92	0	88	28	18	26	26	1.98
14581325--14581377	26	2.0	26	96	0	97	26	18	26	28	1.98
14582176--14582228	26	2.0	26	92	0	88	28	22	22	26	1.99
14583061--14583113	26	2.0	26	85	0	70	28	18	22	30	1.98
14581932--14584192	885	2.5	883	88	2	3273	24	25	25	24	2.00
14583954--14584003	26	1.9	26	88	8	75	28	14	24	34	1.93
14584644--14584670	4	6.8	4	100	0	54	0	25	74	0	0.83
14584209--14587529	870	3.8	858	84	6	3991	25	24	25	25	2.00
14586992--14588079	550	2.0	546	85	5	1471	25	23	25	25	2.00
14588503--14588553	26	2.0	26	88	0	75	29	17	25	27	1.98
14590276--14590328	26	2.0	26	96	0	97	28	20	24	26	1.99
14587628--14597658	903	11.1	891	81	7	9231	25	23	25	25	2.00
14592074--14592126	26	2.0	26	92	0	88	28	18	24	28	1.98
14593041--14593093	26	2.0	26	96	0	97	28	20	24	26	1.99
14591299--14594153	967	3.0	963	87	3	3938	24	23	25	26	2.00
14594007--14594057	26	2.0	26	84	0	66	31	25	17	25	1.97
14594897--14594948	26	2.0	26	100	0	104	26	19	26	26	1.99
14597574--14597626	26	2.0	26	88	0	79	28	20	24	26	1.99
14596914--14599727	734	4.0	709	86	4	3712	26	23	24	26	2.00
14599701--14599753	26	2.0	26	96	0	97	24	22	26	26	2.00
14600585--14600637	26	2.0	26	100	0	106	30	20	22	26	1.98
14601479--14601531	26	2.0	26	96	0	97	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14603333--14603384	26	2.0	26	92	0	86	32	19	19	28	1.96
14604230--14604282	26	2.0	26	92	0	88	30	20	22	26	1.98
14598987--14608615	902	10.8	897	84	5	10799	25	23	24	25	2.00
14605133--14605185	26	2.0	26	96	0	97	28	20	24	26	1.99
14606024--14606076	26	2.0	26	92	0	88	26	18	24	30	1.98
14607781--14607833	26	2.0	26	96	0	97	28	16	24	30	1.97
14609380--14609432	26	2.0	26	92	0	88	26	16	28	28	1.97
14610278--14610327	26	2.0	26	92	4	84	28	20	22	30	1.98
14608618--14622681	898	15.9	899	84	5	16992	25	24	24	25	2.00
14615565--14615616	26	2.0	26	96	0	95	26	21	25	26	1.99
14617354--14617406	26	2.0	26	100	0	106	26	20	26	26	1.99
14611998--14622681	894	12.0	897	84	4	13059	25	23	24	25	2.00
14620858--14620910	26	2.0	26	96	0	97	26	18	26	28	1.98
14621756--14621808	26	2.0	26	96	0	97	28	16	24	30	1.97
14619012--14622681	895	4.1	899	87	2	5068	25	24	24	25	2.00
14621913--14623412	709	2.1	712	88	3	2212	26	23	23	26	2.00
14624229--14624283	26	2.1	27	89	3	85	32	18	27	21	1.96
14627561--14627613	26	2.0	26	88	0	79	28	16	24	30	1.97
14625927--14632882	888	7.8	898	79	8	6856	25	24	24	26	2.00
14629402--14629454	26	2.0	26	85	7	72	30	16	22	30	1.96
14630252--14630303	26	2.0	26	100	0	104	26	19	26	26	1.99
14632012--14632064	26	2.0	26	82	7	63	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14629901--14632892	877	3.4	886	83	6	3760	25	24	24	25	2.00
14637269--14637321	26	2.0	26	88	0	79	26	18	24	30	1.98
14639061--14639113	26	2.0	26	96	0	97	28	20	24	26	1.99
14639962--14640014	26	2.0	26	96	0	97	28	20	24	26	1.99
14641766--14641818	26	2.0	26	89	7	81	28	18	22	30	1.98
14636396--14645599	903	10.2	903	85	2	11944	25	24	24	25	2.00
14643565--14643617	26	2.0	26	92	0	88	28	18	24	28	1.98
14645357--14645409	26	2.0	26	92	0	88	28	22	24	24	2.00
14646584--14646636	26	2.0	26	92	0	88	26	16	28	28	1.97
14645853--14648411	911	2.8	888	85	4	3385	26	23	24	25	2.00
14647641--14649128	717	2.1	716	88	1	2196	26	23	23	26	2.00
14649104--14649154	26	2.0	26	92	0	84	27	17	23	31	1.97
14650703--14650755	26	2.0	26	92	7	90	30	20	24	24	1.99
14652380--14652432	26	2.0	26	85	7	72	30	16	24	28	1.97
14653282--14653334	26	2.0	26	92	0	88	28	18	24	28	1.98
14651460--14655064	892	4.1	888	83	4	3955	25	23	25	25	2.00
14655625--14655657	17	1.9	17	93	0	57	24	42	18	15	1.88
14657550--14657602	26	2.0	26	85	0	70	32	13	26	28	1.93
14658451--14658503	26	2.0	26	88	0	79	30	18	22	28	1.98
14656678--14659372	893	3.0	892	85	3	3587	25	23	25	25	2.00
14658710--14660835	754	2.9	740	87	4	3024	26	23	23	26	2.00
14662461--14662513	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14663350--14663427	26	3.1	26	92	3	133	26	14	26	32	1.94
14664279--14664331	26	2.0	26	92	0	88	30	20	22	26	1.98
14668720--14668772	26	2.0	26	92	0	88	28	18	24	28	1.98
14660780--14671470	900	11.9	900	85	4	13301	25	24	24	25	2.00
14669620--14669672	26	2.0	26	92	0	88	28	18	24	28	1.98
14671393--14671445	26	2.0	26	92	0	88	28	20	22	28	1.99
14670786--14672153	699	2.0	697	87	3	1971	26	23	21	28	1.99
14671484--14677746	870	7.1	898	83	5	7158	25	23	24	25	2.00
14675649--14675699	26	2.0	26	92	0	84	29	17	23	29	1.97
14676541--14676593	26	2.0	26	88	0	79	26	18	24	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131