genome.fa.s2.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  86  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15587397--15590066	895	3.0	885	86	4	3512	26	25	23	24	2.00
15589202--15589245	19	2.3	19	100	0	88	29	13	22	34	1.93
15589780--15589829	26	1.9	26	95	0	91	28	28	18	26	1.98
15591410--15591462	26	2.0	26	96	0	97	28	26	18	26	1.98
15590543--15593962	900	3.8	884	80	9	3693	26	24	23	25	2.00
15595627--15595679	26	2.0	26	96	0	97	26	24	20	28	1.99
15596535--15596587	26	2.0	26	92	0	88	28	24	18	28	1.98
15597431--15597480	26	1.9	26	91	0	82	26	22	20	32	1.98
15598451--15598503	26	2.0	26	96	0	97	26	24	20	28	1.99
15599354--15599404	26	2.0	26	92	0	84	23	25	21	29	1.99
15598022--15601023	900	3.3	900	86	2	4046	26	25	23	25	2.00
15600254--15600306	26	2.0	26	100	0	106	30	26	16	26	1.97
15600997--15601049	26	2.0	26	96	0	97	24	26	22	26	2.00
15601127--15603150	705	2.8	706	87	3	2812	27	23	22	26	1.99
15604151--15604200	26	1.9	26	91	0	82	26	22	20	32	1.98
15605170--15605222	26	2.0	26	92	0	88	26	22	20	30	1.98
15606073--15606123	26	2.0	26	96	0	93	25	25	19	29	1.99
15604741--15607657	903	3.3	891	81	9	3139	25	25	22	25	2.00
15607631--15607683	26	2.0	26	96	0	97	24	26	22	26	2.00
15607761--15609785	706	2.8	705	86	3	2787	27	23	22	26	1.99
15609014--15611547	896	2.8	896	87	2	3616	25	23	23	26	2.00
15611910--15611961	26	2.0	26	84	0	68	32	25	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15612813--15612865	26	2.0	26	92	0	88	28	28	18	24	1.98
15613065--15613117	26	2.0	26	85	0	70	30	22	18	28	1.98
15612813--15613306	252	2.0	248	84	4	615	20	24	31	23	1.98
15614844--15614896	26	2.0	26	100	0	106	26	26	20	26	1.99
15613091--15617358	877	4.9	875	87	3	5779	26	25	24	24	2.00
15616599--15618092	714	2.1	707	88	3	2214	26	24	23	25	2.00
15618204--15618256	26	2.0	26	100	0	106	26	26	20	26	1.99
15618384--15618436	26	2.0	26	85	0	70	30	24	18	26	1.98
15619288--15619340	26	2.0	26	96	0	97	28	30	15	26	1.96
15619816--15619868	26	2.0	26	85	0	70	30	22	18	28	1.98
15620699--15620757	26	2.3	26	94	5	104	27	27	20	25	1.99
15621604--15621656	26	2.0	26	100	0	106	26	26	20	26	1.99
15619827--15622605	900	3.1	897	86	3	3804	25	25	24	24	2.00
15622509--15622558	26	1.9	26	91	0	82	26	24	22	28	1.99
15623218--15623270	26	2.0	26	85	0	70	32	22	18	26	1.97
15625486--15625538	26	2.0	26	88	0	79	28	24	16	30	1.97
15626961--15627011	26	2.0	26	92	0	84	29	23	17	29	1.97
15626874--15631239	903	4.8	900	87	2	6023	26	24	24	25	2.00
15628767--15628817	26	2.0	25	92	3	84	27	21	19	31	1.97
15632097--15632146	26	1.9	26	100	0	100	24	26	20	30	1.98
15632992--15633044	26	2.0	26	96	0	97	26	28	20	24	1.99
15631238--15637510	895	7.0	895	82	6	7162	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15634784--15634836	27	2.0	27	92	7	90	28	24	22	24	2.00
15635451--15635483	16	2.1	16	94	0	57	3	63	27	6	1.32
15635661--15635710	26	1.9	26	91	0	82	24	24	22	30	1.99
15636561--15636613	26	2.0	26	100	0	106	26	26	20	26	1.99
15637454--15637505	26	2.0	26	92	7	88	26	23	19	30	1.98
15638912--15638964	26	2.0	26	92	0	88	26	26	18	28	1.98
15639802--15639875	26	2.8	26	93	0	130	25	28	18	27	1.98
15640721--15640772	26	2.0	26	96	0	95	28	26	17	26	1.97
15641615--15641667	26	2.0	26	92	0	88	28	24	20	26	1.99
15638046--15643430	893	6.0	895	86	3	7062	25	24	24	25	2.00
15642515--15642566	25	2.0	26	88	3	79	28	23	19	28	1.98
15643669--15643721	26	2.0	26	92	0	88	30	26	16	26	1.97
15644564--15644615	26	2.0	25	92	3	86	28	23	21	26	1.99
15643445--15645348	895	2.1	895	89	1	2893	25	24	24	26	2.00
15646173--15646225	26	2.0	26	96	0	97	26	26	22	24	2.00
15646741--15646793	26	2.0	26	100	0	106	26	26	20	26	1.99
15646069--15647183	554	2.0	559	88	2	1637	22	25	26	24	2.00
15647629--15647681	26	2.0	26	96	0	97	28	26	16	28	1.97
15648523--15648575	26	2.0	26	96	0	97	26	28	18	26	1.98
15646627--15659282	884	14.1	884	75	12	9319	25	24	23	25	2.00
15650279--15650331	26	2.0	26	88	0	79	28	28	15	28	1.96
15650799--15650851	26	2.0	26	88	0	79	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15652259--15652311	26	2.0	26	88	0	79	30	26	18	24	1.98
15653142--15653192	26	2.0	26	96	0	93	29	27	13	29	1.94
15651311--15659282	893	9.1	870	80	10	7354	25	24	23	26	2.00
15654904--15654956	26	2.0	26	92	0	88	28	24	18	28	1.98
15657503--15657554	26	2.0	26	96	0	95	28	26	17	26	1.97
15658396--15658448	26	2.0	26	96	0	97	28	24	20	26	1.99
15661552--15661604	26	2.0	26	96	0	97	26	24	20	28	1.99
15660301--15661770	732	2.0	733	89	2	2245	26	23	25	25	2.00
15662400--15662451	26	2.0	26	96	0	95	25	19	21	34	1.96
15663725--15663774	26	1.9	26	95	0	91	24	24	22	30	1.99
15664803--15665350	281	2.0	280	90	0	862	27	22	21	28	1.99
15666223--15666276	24	2.2	24	96	0	99	51	9	5	33	1.57
15666660--15666712	26	2.0	26	92	0	88	28	24	18	28	1.98
15665784--15673088	895	8.2	898	85	4	9184	25	24	24	25	2.00
15667565--15667617	26	2.0	26	92	0	88	28	24	18	28	1.98
15668455--15668507	26	2.0	26	92	0	88	30	26	18	24	1.98
15669313--15669365	26	2.0	26	96	0	97	28	26	18	26	1.98
15670226--15670275	26	1.9	26	95	0	91	26	28	18	28	1.98
15671118--15671170	26	2.0	26	100	0	106	30	26	16	26	1.97
15672013--15672065	26	2.0	26	96	0	97	28	26	18	26	1.98
15672925--15672975	26	2.0	26	92	0	84	33	25	13	27	1.94
15673488--15673540	26	2.0	26	88	0	79	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15674389--15674438	26	1.9	26	91	0	82	22	28	20	30	1.98
15674415--15677712	894	3.8	867	84	4	4303	26	24	23	25	2.00
15676138--15676190	26	2.0	26	89	7	81	26	20	20	32	1.98
15677809--15677861	26	2.0	26	96	0	97	28	26	18	26	1.98
15677835--15682952	869	5.9	867	80	9	5076	26	24	23	25	2.00
15680457--15680509	26	2.0	26	96	0	97	28	26	18	26	1.98
15682185--15682237	26	2.0	26	88	0	79	30	24	16	28	1.97
15683767--15683819	26	2.0	26	88	0	79	28	22	18	30	1.98
15684661--15684717	26	2.3	25	87	6	80	29	22	21	26	1.99
15682897--15686248	891	3.7	878	83	6	3671	26	24	23	25	2.00
15685549--15685601	26	2.0	26	96	0	97	28	26	18	26	1.98
15685731--15685805	24	3.1	24	92	0	123	18	14	38	28	1.90
15686308--15689784	870	4.0	877	86	2	4602	26	25	23	24	2.00
15691399--15693755	867	2.7	871	94	2	4014	26	24	22	25	2.00
15694915--15694972	26	2.2	26	81	3	62	60	10	8	20	1.55
15697078--15697160	26	3.2	26	86	11	125	28	22	20	27	1.99
15698857--15698909	26	2.0	26	92	0	88	26	24	22	26	2.00
15699048--15699644	304	2.0	304	88	2	894	22	24	26	25	2.00
15701211--15701487	136	2.0	136	95	0	491	28	17	19	34	1.94
15703421--15703476	27	2.0	28	89	3	87	28	28	19	23	1.98
15705374--15705426	26	2.0	26	85	0	70	28	22	18	30	1.98
15703604--15708806	896	5.8	897	85	4	6675	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15708035--15708087	26	2.0	26	96	0	97	26	24	20	28	1.99
15709641--15709693	26	2.0	26	96	0	97	30	24	16	28	1.97
15710546--15710598	26	2.0	26	96	0	97	28	26	18	26	1.98
15710880--15710924	19	2.4	19	100	0	90	28	17	24	28	1.97
15711013--15711069	27	2.2	24	78	9	60	57	19	5	17	1.58
15711448--15711500	26	2.0	26	89	7	81	30	24	16	28	1.97
15712340--15712392	26	2.0	26	96	0	97	28	26	18	26	1.98
15714143--15714195	26	2.0	26	96	0	97	28	26	18	26	1.98
15708767--15715071	903	7.0	901	85	4	7945	25	24	24	25	2.00
15714618--15714676	26	2.2	26	81	3	73	61	8	6	23	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131