Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  55  of  131  ( 15626 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11281968--11282008
19
2.0
21
90
9
68
14
0
41
43
1.45
11281997--11282055
7
8.7
7
75
7
59
16
0
42
40
1.49
11282127--11282160
14
2.4
14
90
0
50
11
0
44
44
1.40
11284353--11284405
13
4.2
13
77
18
51
22
20
0
56
1.42
11284595--11284881
31
9.2
31
68
11
120
25
17
19
37
1.93
11284668--11284881
96
2.3
94
82
4
245
26
15
19
38
1.92
11286734--11286780
20
2.3
20
78
7
51
6
8
4
80
1.00
11287313--11287351
18
2.2
18
85
0
51
2
15
0
82
0.79
11289478--11289533
28
2.0
28
92
0
94
41
7
28
23
1.80
11290411--11290624
37
5.8
36
70
10
135
34
10
20
34
1.87
11292974--11293055
7
10.6
7
71
23
58
15
4
36
42
1.69
11295151--11295188
20
1.9
20
94
0
67
26
10
13
50
1.73
11298158--11298258
22
4.6
22
76
10
84
43
11
7
36
1.71
11298245--11298335
22
4.1
22
77
5
87
47
6
6
39
1.56
11298433--11298577
23
6.7
21
67
9
85
42
13
10
33
1.79
11298417--11298530
23
5.1
23
72
9
101
43
11
9
35
1.73
11298224--11298949
45
16.6
43
77
8
533
41
10
11
36
1.75
11298284--11298949
130
5.1
128
77
9
535
41
10
11
36
1.76
11301478--11301544
26
2.5
27
75
4
73
61
0
8
29
1.27
11302192--11302287
48
2.0
48
100
0
192
37
4
10
47
1.57
11304790--11304819
14
2.1
14
93
0
51
90
0
10
0
0.47
11307241--11307277
16
2.3
16
90
0
56
86
0
5
8
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11307809--11307878
16
4.4
16
75
7
63
80
1
17
1
0.87
11307827--11307877
25
2.0
25
84
3
66
80
1
17
0
0.81
11307841--11307883
16
2.6
16
77
3
50
83
4
11
0
0.78
11307828--11307883
23
2.5
22
77
13
60
82
3
14
0
0.81
11308363--11308420
18
3.3
19
81
9
61
79
0
15
5
0.90
11308397--11308436
18
2.4
16
87
8
53
82
2
12
2
0.87
11309552--11309596
20
2.2
20
80
0
54
51
4
2
42
1.34
11309880--11309910
5
6.2
5
96
0
53
38
0
41
19
1.51
11311220--11311340
46
2.6
46
90
0
197
35
10
10
42
1.75
11311220--11311387
46
3.7
45
84
4
149
36
11
10
41
1.76
11312251--11312331
22
3.8
21
76
7
74
45
12
7
34
1.70
11312339--11312392
23
2.5
21
77
14
56
50
9
5
35
1.58
11312361--11312972
44
14.0
44
76
9
400
40
10
9
38
1.73
11312340--11312972
88
7.2
87
74
12
442
40
10
9
38
1.73
11318921--11318955
16
2.2
16
89
0
52
40
11
14
34
1.82
11320391--11320446
22
2.5
22
82
0
76
10
19
0
69
1.17
11320410--11320439
16
1.9
15
93
6
51
6
16
0
76
0.99
11340070--11340128
25
2.4
24
81
13
66
40
10
18
30
1.84
11341839--11341878
21
2.0
20
85
9
55
72
2
5
20
1.15
11343494--11343633
73
1.9
71
88
5
210
16
32
4
46
1.66
11343587--11343634
19
2.9
16
77
19
53
14
43
4
37
1.65
11343661--11343691
12
2.6
12
94
0
53
29
32
9
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11350114--11350168
12
4.4
13
70
6
51
47
1
1
49
1.23
11351099--11351197
44
2.2
45
75
5
103
36
4
8
51
1.50
11352835--11352868
14
2.3
15
90
5
52
50
0
5
44
1.26
11352835--11352872
14
2.7
14
88
8
51
52
0
5
42
1.24
11358481--11358512
16
2.0
16
100
0
64
31
6
12
50
1.65
11362782--11362813
16
1.9
17
93
6
57
50
43
0
6
1.27
11373009--11373227
108
2.0
108
94
0
384
32
15
16
35
1.90
11378118--11378276
83
1.9
83
97
0
300
43
20
11
24
1.85
11378483--11378514
2
16.0
2
93
0
55
0
46
3
50
1.17
11386905--11386948
22
2.0
22
86
8
63
45
9
6
38
1.63
11391992--11392085
49
1.9
49
91
0
152
28
15
8
46
1.75
11392106--11392215
18
6.1
18
75
15
102
42
38
3
15
1.64
11392106--11392230
19
6.8
19
76
10
102
43
38
3
15
1.63
11392343--11392374
11
2.9
11
90
0
55
37
43
0
18
1.51
11403439--11403484
21
2.1
22
88
4
67
52
8
17
21
1.71
11404606--11404697
30
2.9
31
76
15
84
27
3
6
63
1.35
11405232--11405265
10
3.3
10
87
4
50
70
20
0
8
1.13
11405816--11405927
26
4.3
26
79
0
98
28
26
25
19
1.99
11405787--11405894
52
2.1
52
82
6
130
27
26
25
19
1.99
11405815--11405928
52
2.2
51
79
4
120
28
26
24
21
1.99
11407450--11407628
44
4.2
44
77
8
172
16
16
11
55
1.69
11407470--11407629
85
1.9
85
82
7
200
17
16
11
55
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11407470--11407629
43
3.8
42
79
10
157
17
16
11
55
1.70
11417969--11418024
12
4.7
13
78
14
59
32
0
1
66
1.03
11418089--11418114
11
2.4
11
100
0
52
92
0
0
7
0.39
11418132--11418173
19
2.2
19
86
0
57
76
4
4
14
1.12
11418127--11418176
24
2.1
24
85
7
66
78
4
4
14
1.05
11418574--11418616
10
4.2
10
96
3
77
60
18
9
11
1.57
11419031--11419081
14
3.8
14
76
10
52
82
5
0
11
0.83
11419031--11419081
20
2.5
20
90
0
75
82
5
0
11
0.83
11419058--11419133
3
27.7
3
72
17
67
65
0
2
31
1.06
11419071--11419129
5
11.2
5
87
3
73
61
0
3
35
1.13
11419175--11419268
26
3.6
26
76
0
98
24
25
29
20
1.99
11420779--11420834
21
2.6
21
81
10
60
8
7
3
80
1.01
11422506--11422541
15
2.4
15
90
0
54
50
5
22
22
1.70
11433213--11433290
32
2.4
32
85
6
104
46
14
11
28
1.79
11433387--11433454
32
2.2
31
89
2
100
26
17
16
39
1.90
11442309--11442364
15
3.9
14
75
11
51
26
1
1
69
1.08
11444338--11444377
21
2.0
21
85
9
57
22
12
10
55
1.67
11456528--11456558
10
3.2
10
95
4
55
38
0
0
61
0.96
11456531--11456560
9
3.2
9
95
4
51
36
0
0
63
0.95
11458944--11458977
15
2.3
15
89
0
50
41
2
8
47
1.50
11462129--11462168
19
2.0
21
85
9
57
27
17
15
40
1.89
11463069--11463108
17
2.4
17
86
0
62
50
2
0
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11463208--11463278
30
2.6
27
85
14
92
43
1
0
54
1.08
11463213--11463276
15
4.1
15
71
20
51
45
1
0
53
1.10
11463422--11463483
26
2.4
25
89
2
88
48
3
1
46
1.28
11468561--11468619
20
2.8
20
82
10
57
1
30
0
67
1.00
11468572--11468619
11
4.5
11
79
12
55
2
27
0
70
0.98
11471835--11471880
19
2.4
20
82
10
60
23
0
17
58
1.38
11471846--11471883
19
2.0
19
94
0
67
21
0
18
60
1.36
11471878--11471928
16
3.4
14
75
19
57
37
7
11
43
1.71
11472598--11472631
18
1.9
18
94
5
61
64
5
2
26
1.30
11474927--11474966
20
2.0
20
95
0
71
27
0
27
45
1.54
11476811--11476863
26
2.0
26
81
0
61
33
0
3
62
1.13
11486177--11486209
17
1.9
17
93
0
57
45
0
6
48
1.27
11486208--11486264
25
2.5
22
80
11
60
49
8
3
38
1.51
11486338--11486362
2
12.5
2
100
0
50
52
48
0
0
1.00
11486953--11486986
16
2.1
17
94
5
61
52
0
0
47
1.00
11486364--11487377
495
2.1
487
86
4
1430
41
5
7
45
1.54
11487329--11487372
2
23.5
2
86
13
58
45
0
2
52
1.13
11486362--11487370
489
2.1
488
86
4
1417
41
5
7
45
1.54
11487731--11487771
17
2.4
16
84
8
55
29
0
14
56
1.39
11489596--11489634
14
2.9
14
84
3
53
41
0
0
58
0.98
11490565--11490640
6
12.7
6
94
0
80
17
0
15
67
1.24
11490648--11490684
19
1.9
19
94
0
65
37
8
10
43
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11489756--11491391
863
1.9
861
83
6
2108
41
11
12
33
1.80
11493013--11493150
44
3.1
43
82
9
170
41
14
11
32
1.82
11493871--11493907
8
4.6
8
86
0
56
43
0
0
56
0.99
11493871--11493924
14
3.6
16
80
14
62
46
0
0
53
1.00
11493897--11493947
22
2.5
22
90
9
81
49
0
0
50
1.00
11496546--11496946
142
2.9
141
82
5
474
48
11
12
27
1.75
11496873--11496901
13
2.1
14
93
6
51
41
20
6
31
1.79
11497635--11497740
44
2.4
44
76
9
117
56
13
10
19
1.65
11501417--11501477
20
3.0
22
74
13
58
80
4
9
4
1.01
11507367--11507392
9
2.9
9
100
0
52
11
0
7
80
0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131