genome.fa.s2.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  92  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16518696--16518732	16	2.2	17	86	13	51	24	0	0	75	0.80
16518755--16518795	15	2.7	15	88	7	57	24	2	2	70	1.11
16518854--16518906	12	4.7	12	73	19	51	35	3	1	58	1.27
16518888--16518934	11	4.1	12	83	10	53	23	2	4	70	1.16
16518868--16518947	22	3.7	22	77	8	67	27	3	3	65	1.27
16519833--16519871	3	13.0	3	100	0	78	33	0	0	66	0.92
16519893--16520008	5	22.8	5	71	18	55	15	7	0	75	1.06
16519907--16519984	21	3.9	21	90	5	108	15	10	0	74	1.07
16519893--16519958	6	10.5	6	78	15	71	15	4	0	80	0.87
16519912--16520012	21	4.9	20	76	15	91	14	8	0	75	1.09
16520005--16520523	57	9.1	56	72	13	202	42	6	12	38	1.69
16520052--16520462	119	3.7	104	87	6	410	42	6	12	38	1.69
16520157--16520523	58	6.2	58	80	10	390	42	6	12	38	1.69
16520157--16520523	119	3.1	119	88	4	514	42	6	12	38	1.69
16522938--16523134	82	2.4	82	83	1	263	29	13	16	40	1.86
16523331--16523654	42	7.1	48	76	16	287	25	12	19	42	1.86
16523479--16523648	48	3.7	49	80	13	214	25	12	21	40	1.88
16523331--16523669	90	3.8	90	88	1	473	25	12	19	42	1.86
16523987--16524395	48	8.7	48	79	8	391	27	12	20	39	1.88
16523984--16524308	97	3.4	96	85	4	415	28	12	20	39	1.88
16524296--16524450	44	3.5	43	84	4	193	27	15	18	38	1.91
16525730--16525763	14	2.4	14	85	0	50	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16527620--16527679	6	9.3	6	78	12	57	78	3	0	18	0.89
16527624--16527673	25	2.0	24	85	11	66	78	4	0	18	0.91
16527624--16527674	26	2.0	25	84	7	66	78	3	0	17	0.90
16531683--16531870	103	1.8	103	86	3	272	36	7	11	44	1.69
16532070--16532127	29	2.1	29	87	9	86	46	13	5	34	1.66
16533305--16533347	18	2.5	17	80	3	50	74	4	2	18	1.10
16534930--16534975	14	3.0	16	68	12	51	34	4	8	52	1.52
16535529--16535563	19	1.9	18	88	11	54	71	0	5	22	1.07
16538869--16538920	22	2.3	23	81	15	65	50	7	0	42	1.31
16539003--16539029	2	13.5	2	100	0	54	48	0	0	51	1.00
16540917--16540946	2	15.0	2	100	0	60	0	50	0	50	1.00
16544723--16544762	2	20.0	2	94	0	71	50	2	0	47	1.14
16547155--16547218	13	5.6	12	71	22	57	50	1	0	48	1.10
16547186--16547220	10	3.4	10	88	4	52	48	2	0	48	1.16
16547263--16547300	13	2.7	14	84	12	51	39	5	0	55	1.23
16547440--16547678	104	2.3	105	78	9	263	41	10	2	46	1.49
16547877--16547916	19	2.2	19	86	4	55	47	5	5	42	1.47
16547889--16548130	129	1.9	129	85	1	324	46	8	4	41	1.53
16553097--16553140	23	2.0	23	90	4	72	20	11	4	63	1.44
16557394--16557429	3	12.0	3	100	0	72	33	0	0	66	0.92
16561669--16561706	7	5.6	7	87	6	60	86	13	0	0	0.56
16562479--16562512	2	17.0	2	93	0	59	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16563276--16563678	206	2.0	206	95	0	725	28	19	9	42	1.83
16563898--16563931	16	2.2	15	89	5	50	82	11	0	5	0.83
16568999--16569160	81	2.0	81	95	0	288	33	11	25	29	1.91
16569559--16569601	22	2.0	22	90	0	68	34	11	9	44	1.73
16569744--16569791	24	2.1	24	84	7	64	20	20	6	52	1.68
16572094--16572235	51	2.9	51	84	4	166	35	8	19	37	1.82
16575747--16575796	24	2.1	24	88	7	75	20	18	8	54	1.68
16579856--16579894	17	2.3	17	100	0	78	41	12	0	46	1.42
16582808--16582847	20	2.0	20	90	0	62	60	27	2	10	1.42
16583627--16583661	15	2.2	16	90	5	54	57	5	20	17	1.60
16603089--16603150	31	2.0	31	100	0	124	22	12	16	48	1.80
16607273--16607307	11	3.1	11	88	8	52	77	2	0	20	0.90
16607347--16607397	16	3.2	16	72	10	52	84	3	9	1	0.83
16614746--16614799	22	2.4	22	81	3	63	64	1	0	33	1.04
16615723--16615852	43	3.0	43	100	0	260	30	18	16	35	1.93
16616646--16616670	13	1.9	13	100	0	50	52	24	8	16	1.70
16617328--16617352	13	1.9	13	100	0	50	28	16	40	16	1.89
16622632--16622710	3	27.0	3	88	5	117	67	0	0	32	0.91
16627039--16627106	16	4.1	15	75	19	55	22	7	10	60	1.54
16630450--16630491	21	2.0	21	85	4	57	19	21	2	57	1.52
16636188--16636213	12	2.2	12	100	0	52	38	0	0	61	0.96
16648204--16648466	130	2.0	130	98	0	508	35	12	13	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16659340--16659385	23	2.1	22	88	11	69	76	4	19	0	0.96
16659348--16659385	12	3.2	12	85	7	51	73	5	21	0	1.02
16665811--16665844	17	2.0	17	94	0	59	29	8	8	52	1.62
16672817--16672855	3	13.0	3	100	0	78	33	66	0	0	0.92
16673336--16673365	9	3.3	9	100	0	60	76	0	23	0	0.78
16674432--16674477	22	2.1	22	91	0	74	47	13	17	21	1.81
16679380--16679436	28	2.0	28	100	0	114	28	24	3	43	1.70
16684387--16684426	21	1.9	21	89	0	62	32	10	12	45	1.75
16688191--16688471	144	2.0	144	84	4	370	32	15	12	39	1.86
16690897--16690948	26	2.0	26	88	0	77	32	3	0	63	1.12
16693171--16693201	4	7.8	4	92	0	53	25	29	0	45	1.54
16696044--16696086	14	2.8	15	79	13	52	79	0	16	4	0.90
16697049--16697116	32	2.2	31	84	7	84	35	14	14	35	1.87
16697267--16697318	22	2.4	22	83	0	59	36	19	17	26	1.94
16697500--16697614	33	3.5	32	74	9	97	34	16	14	33	1.90
16697530--16697951	67	6.3	68	74	10	225	36	19	14	28	1.92
16697563--16698183	34	18.5	34	72	8	371	37	19	14	28	1.92
16697524--16698177	66	9.8	65	73	9	279	37	19	14	28	1.91
16697757--16698015	101	2.6	101	89	2	387	37	19	15	28	1.91
16698062--16698250	34	5.6	33	72	9	114	35	20	14	29	1.92
16701562--16701597	15	2.4	15	100	0	72	30	11	30	27	1.91
16710287--16710319	16	1.9	18	88	11	52	63	3	9	24	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16720909--16720941	17	2.0	17	88	5	50	57	3	0	39	1.14
16727741--16727784	19	2.3	19	100	0	88	47	9	9	34	1.67
16727845--16728202	160	2.2	159	79	6	400	41	15	9	33	1.79
16729736--16729870	62	2.1	62	80	10	150	36	11	9	42	1.75
16729941--16730059	64	1.9	61	81	8	141	42	6	7	43	1.59
16729838--16730712	439	2.0	437	83	4	1109	36	12	12	39	1.80
16730516--16730746	128	1.8	128	81	3	295	33	16	9	41	1.80
16731420--16731519	12	7.8	12	74	20	78	19	7	28	46	1.75
16731447--16731531	25	3.4	25	85	4	109	17	8	28	45	1.77
16733923--16733973	20	2.5	20	79	14	61	25	5	5	62	1.41
16735389--16735572	63	3.0	62	71	8	151	30	16	11	40	1.85
16735522--16735643	60	2.0	60	93	3	210	34	15	11	38	1.84
16736451--16736510	31	1.9	31	89	0	93	30	13	11	45	1.79
16736567--16736689	15	7.7	15	71	18	79	30	9	6	52	1.59
16736604--16736689	32	2.7	32	83	3	102	32	10	5	51	1.60
16738040--16738112	35	2.1	36	86	2	103	43	15	16	24	1.86
16751516--16751582	25	2.7	25	97	0	125	0	23	0	76	0.79
16751522--16751583	16	4.3	16	69	26	57	0	22	0	77	0.77
16752004--16752118	19	5.9	19	76	13	110	18	0	44	36	1.56
16752025--16752108	40	2.1	41	90	2	134	17	1	47	33	1.56
16752106--16752153	7	6.9	7	78	0	51	18	2	33	45	1.61
16752107--16752153	21	2.2	21	84	0	58	19	2	31	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16754577--16754624	19	2.4	19	80	13	53	6	6	2	85	0.81
16754577--16754634	30	1.9	30	82	0	71	8	6	3	81	0.98
16754705--16754893	49	3.8	49	83	1	234	41	15	13	29	1.85
16754711--16754897	99	1.9	98	86	1	266	42	14	13	29	1.84
16755007--16755106	32	3.1	31	73	11	78	33	15	13	39	1.85
16755734--16755775	10	4.1	10	85	11	50	11	4	2	80	0.95
16756474--16756530	23	2.5	23	97	0	105	29	24	3	42	1.71
16757472--16757519	22	2.1	22	85	11	62	2	18	0	79	0.84
16757481--16757519	11	3.4	12	86	10	55	2	15	0	82	0.79
16757481--16757527	12	4.2	11	84	13	60	4	14	0	80	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131