genome.fa.s2.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  71  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13450057--13450109	26	2.0	26	96	0	97	26	24	20	28	1.99
13446485--13455180	900	9.8	896	85	4	10675	26	24	23	25	2.00
13450962--13455180	893	4.8	898	83	5	5039	26	24	23	25	2.00
13452725--13452777	26	2.0	26	92	0	88	26	26	18	28	1.98
13453587--13453639	26	2.0	26	92	0	88	28	28	16	26	1.97
13454469--13454521	26	2.0	26	89	7	81	32	22	18	26	1.97
13455967--13456018	26	2.0	26	92	0	86	28	25	17	28	1.97
13456848--13456899	26	2.0	26	88	0	77	28	23	17	30	1.97
13455263--13463862	880	9.7	892	84	4	10470	25	24	24	25	2.00
13456992--13463862	898	7.7	897	84	4	8545	25	24	24	25	2.00
13462207--13462256	26	1.9	26	87	0	73	30	24	16	30	1.96
13463096--13463148	26	2.0	26	88	0	79	30	28	18	22	1.98
13463879--13470899	900	7.9	897	84	4	8667	25	24	23	25	2.00
13466573--13466623	26	2.0	26	88	0	75	27	23	17	31	1.97
13468322--13468374	26	2.0	26	92	0	88	30	26	16	26	1.97
13469223--13469275	26	2.0	26	88	0	79	30	24	16	28	1.97
13467515--13470899	901	3.8	895	86	3	4472	25	24	24	26	2.00
13473959--13474010	26	2.0	26	92	0	86	28	17	21	32	1.96
13474855--13474906	26	2.0	26	100	0	104	26	19	26	26	1.99
13475757--13475808	26	2.0	25	88	3	77	28	13	25	32	1.93
13473452--13477565	891	4.6	892	86	3	5426	25	24	24	26	2.00
13476636--13476688	26	2.0	26	92	0	88	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13476881--13478268	705	2.0	705	88	1	2102	26	23	23	27	2.00
13477536--13480959	895	3.8	894	89	2	4925	25	23	24	25	2.00
13482480--13482530	26	2.0	26	96	0	93	29	17	23	29	1.97
13483370--13483444	26	2.9	25	90	7	114	29	21	22	26	1.99
13485041--13485092	26	2.0	26	96	0	95	28	19	25	26	1.98
13485933--13485985	26	2.0	26	89	7	81	26	15	28	30	1.96
13487717--13487769	26	2.0	26	88	0	79	32	18	24	24	1.97
13488614--13488665	26	2.0	26	88	0	77	30	17	23	28	1.97
13483422--13491201	904	8.7	896	84	4	9687	25	23	24	26	2.00
13489417--13489444	14	2.0	14	100	0	56	14	28	35	21	1.92
13490375--13490427	26	2.0	26	88	0	79	30	16	24	28	1.97
13491541--13491593	26	2.0	26	89	7	81	32	20	24	22	1.98
13491748--13492900	577	2.0	576	89	1	1756	26	21	23	28	1.99
13492324--13495549	895	3.6	899	83	5	4110	25	23	24	26	2.00
13494799--13494851	26	2.0	26	92	0	88	28	18	24	28	1.98
13496557--13502326	719	8.0	713	80	7	5690	26	23	24	26	2.00
13498691--13498743	26	2.0	26	89	7	81	28	16	24	30	1.97
13502300--13502352	26	2.0	26	96	0	97	30	18	22	28	1.98
13502463--13504669	718	3.1	705	82	7	2737	26	22	24	26	2.00
13505489--13505539	26	2.0	26	88	0	75	27	17	25	29	1.98
13503881--13508195	887	4.8	898	86	3	5748	25	24	25	25	2.00
13507282--13507334	26	2.0	26	96	0	97	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13509754--13509803	26	1.9	26	100	0	100	28	20	28	24	1.99
13508171--13510681	904	2.8	896	87	3	3219	25	23	24	26	2.00
13509933--13513113	719	4.5	710	86	3	4287	26	23	23	26	2.00
13518803--13518855	26	2.0	26	92	0	88	28	18	24	28	1.98
13519707--13519759	26	2.0	26	96	0	97	28	18	26	26	1.98
13521184--13521234	26	2.0	26	92	0	84	29	15	23	31	1.95
13522068--13522120	26	2.0	26	88	0	79	28	20	24	26	1.99
13522382--13522434	26	2.0	26	85	0	70	26	20	26	26	1.99
13522531--13522579	21	2.3	21	92	0	80	14	44	18	22	1.85
13524183--13524234	26	2.0	26	96	0	95	25	15	26	32	1.95
13525077--13525129	26	2.0	26	92	0	88	28	22	22	26	1.99
13525974--13526026	26	2.0	26	96	0	97	28	16	24	30	1.97
13526877--13526932	26	2.2	26	93	0	94	25	17	26	30	1.97
13522292--13532192	899	11.1	900	83	6	11382	25	24	24	25	2.00
13527781--13527831	26	2.0	26	88	7	77	29	11	27	31	1.92
13528673--13528726	26	2.1	26	89	0	81	29	18	24	27	1.98
13531266--13531316	26	2.0	26	92	0	84	27	19	25	27	1.99
13531450--13533612	706	3.0	702	85	5	2864	25	23	23	26	2.00
13533587--13533638	26	2.0	27	92	3	88	30	19	25	25	1.98
13533772--13536897	720	4.4	708	81	8	3277	26	22	23	27	2.00
13536894--13538888	722	2.8	714	86	3	2629	26	24	23	25	2.00
13539349--13539421	26	2.8	26	93	0	128	27	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13540234--13540286	26	2.0	26	92	0	88	28	18	26	26	1.98
13541844--13541896	26	2.0	26	92	0	88	26	16	30	26	1.97
13543618--13543670	26	2.0	26	88	0	79	24	20	26	28	1.99
13541116--13550155	897	10.1	896	84	5	10761	25	23	24	25	2.00
13545432--13545484	26	2.0	26	88	0	79	30	20	20	28	1.98
13549003--13549055	26	2.0	26	92	0	88	26	20	24	28	1.99
13550664--13550716	26	2.0	26	88	0	79	24	16	28	30	1.97
13551408--13551458	25	2.0	25	85	7	68	13	31	31	23	1.93
13551528--13551580	26	2.0	26	96	0	97	26	18	26	28	1.98
13552412--13552463	26	2.0	26	96	3	97	26	21	25	26	1.99
13553309--13553361	26	2.0	26	96	0	97	28	20	24	26	1.99
13554198--13554250	26	2.0	26	96	0	97	26	22	26	24	2.00
13555097--13555149	26	2.0	26	88	0	79	28	16	24	30	1.97
13550734--13556084	899	6.0	900	87	3	7167	25	24	24	25	2.00
13556000--13556050	26	2.0	26	96	0	93	27	17	25	29	1.98
13555282--13556817	744	2.1	744	90	0	2383	26	23	23	26	2.00
13556744--13556796	26	2.0	26	96	0	97	26	22	26	24	2.00
13557635--13557687	26	2.0	26	100	0	106	26	20	26	26	1.99
13556026--13571264	891	17.2	890	82	7	16771	25	23	24	25	2.00
13558515--13558566	26	2.0	26	100	0	104	26	19	26	26	1.99
13561201--13561253	26	2.0	26	96	0	97	24	20	28	26	1.99
13562096--13562148	26	2.0	26	92	0	88	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13564745--13564797	26	2.0	26	92	0	88	28	18	24	28	1.98
13565601--13565653	26	2.0	26	92	0	88	30	16	22	30	1.96
13566503--13566555	26	2.0	26	92	0	88	28	18	24	28	1.98
13570873--13570924	25	2.0	26	92	3	88	25	19	26	28	1.98
13572075--13572663	59	9.9	59	83	10	707	34	12	8	44	1.72
13572075--13572652	116	4.9	114	84	8	721	34	12	8	44	1.72
13572070--13572644	298	1.9	296	90	5	910	34	13	8	44	1.73
13572723--13572776	1	54.0	1	77	0	54	88	3	1	5	0.67
13573104--13573155	20	2.6	20	88	8	79	25	23	25	26	2.00
13573146--13573185	11	3.7	11	83	6	55	20	27	35	17	1.95
13573279--13573332	25	2.2	25	86	6	74	33	18	7	40	1.78
13573682--13573707	3	8.7	3	100	0	52	69	0	0	30	0.89
13573744--13573860	3	37.3	3	72	21	66	64	5	0	30	1.15
13574035--13574075	6	7.0	6	78	15	50	12	0	4	82	0.81
13574049--13574147	1	99.0	1	76	0	81	5	0	8	86	0.69
13574036--13574148	17	6.8	16	82	10	120	6	0	8	84	0.76
13574155--13574719	83	6.9	80	91	5	807	37	23	17	22	1.94
13574155--13574719	40	13.8	40	91	4	784	37	23	17	22	1.94
13575956--13575986	8	3.9	8	91	0	53	9	16	0	74	1.07
13576412--13576439	1	28.0	1	100	0	56	0	0	0	100	0.00
13578721--13578767	15	3.1	15	90	3	76	48	4	25	21	1.68
13581929--13582480	57	9.8	56	91	4	851	35	12	7	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13581924--13582479	223	2.4	223	92	5	918	35	12	7	44	1.71
13582550--13582601	1	52.0	1	76	0	50	88	3	1	5	0.68
13582923--13582974	20	2.6	19	85	8	68	25	21	25	28	1.99
13583516--13583549	3	11.7	3	93	6	61	70	0	0	29	0.87
13583583--13583690	3	35.3	3	69	23	50	64	5	0	29	1.16
13584876--13584928	26	2.0	26	96	0	97	28	20	24	26	1.99
13585132--13586535	718	2.0	718	88	1	2100	26	23	23	26	2.00
13586509--13586561	26	2.0	26	88	0	79	24	20	26	28	1.99
13586686--13588859	709	3.0	707	87	3	3119	25	22	25	26	2.00
13590455--13590507	26	2.0	26	85	0	70	30	20	22	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131