Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  93  of  131  ( 15626 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16758663--16758728
7
9.6
7
76
18
50
0
21
0
78
0.75
16758663--16758728
4
18.0
4
76
17
72
0
21
0
78
0.75
16758663--16758728
18
3.6
18
84
13
82
0
21
0
78
0.75
16758653--16758728
25
3.0
26
90
5
111
0
19
1
78
0.81
16758648--16758720
33
2.2
32
85
7
94
1
17
1
79
0.88
16762452--16762494
20
2.1
21
83
12
54
25
16
11
46
1.80
16769930--16769976
21
2.3
20
85
3
58
40
0
4
55
1.19
16769942--16769983
21
2.0
21
81
9
50
42
0
0
57
0.99
16770153--16770209
23
2.5
23
94
0
96
40
7
0
52
1.28
16775230--16775752
260
2.0
260
98
0
1019
41
23
12
22
1.87
16779130--16779182
26
2.0
26
96
0
97
26
20
0
52
1.46
16783861--16783889
12
2.4
12
100
0
58
17
17
17
48
1.82
16785665--16785730
32
2.1
32
97
0
123
65
3
3
28
1.23
16787488--16787536
23
2.2
20
80
16
53
63
4
4
28
1.31
16790373--16790412
21
1.9
21
89
0
62
32
5
2
60
1.32
16792383--16792414
17
1.9
16
93
6
55
56
0
25
18
1.42
16792419--16792581
83
2.0
83
97
0
308
39
19
11
30
1.87
16794057--16794097
21
2.0
21
90
4
66
2
12
2
82
0.86
16799162--16799187
13
2.0
13
100
0
52
15
7
15
61
1.55
16799758--16799789
16
1.9
17
93
6
57
62
6
18
12
1.50
16803510--16803555
18
2.6
18
96
0
83
15
10
13
60
1.58
16807813--16807850
19
2.0
19
89
0
58
21
21
13
44
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16814224--16814248
12
2.1
12
100
0
50
24
24
16
36
1.94
16814252--16814340
7
13.1
7
70
11
60
49
37
0
13
1.42
16814249--16814290
20
2.1
20
86
0
57
50
40
0
9
1.35
16814252--16814340
27
3.3
26
78
7
88
49
37
0
13
1.42
16814892--16814938
24
1.9
25
82
4
60
42
4
4
48
1.42
16814891--16814938
25
1.9
25
83
8
62
41
4
4
50
1.41
16814898--16814946
25
2.1
24
85
11
66
40
2
2
55
1.23
16816139--16816208
8
8.0
8
76
20
61
84
1
14
0
0.70
16816142--16816202
10
6.4
9
85
14
79
85
1
13
0
0.68
16816142--16816207
20
3.3
20
89
10
93
84
1
13
0
0.68
16816141--16816202
9
6.7
9
78
12
63
83
1
14
0
0.71
16817861--16818035
85
2.0
88
87
5
259
57
5
17
19
1.59
16824486--16824725
128
1.9
128
85
5
333
36
9
22
31
1.86
16825025--16825056
17
1.9
17
93
6
57
21
0
12
65
1.25
16825166--16825195
12
2.4
13
94
5
53
70
0
0
30
0.88
16827075--16827151
33
2.3
33
81
18
81
24
6
5
63
1.39
16828859--16828914
4
14.0
4
88
0
58
25
28
0
46
1.53
16830614--16830661
20
2.4
21
79
10
64
72
0
20
6
1.05
16830627--16830659
10
3.3
10
100
0
66
72
0
18
9
1.10
16830614--16830669
20
2.8
19
76
10
58
73
0
19
7
1.06
16832961--16833259
32
9.2
33
75
8
163
35
18
16
29
1.93
16832956--16833256
65
4.6
65
76
4
187
35
18
16
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16832961--16833291
33
10.2
32
76
7
179
35
18
16
29
1.92
16833048--16833309
98
2.7
97
78
5
251
36
19
16
27
1.93
16833136--16833324
33
5.8
33
77
8
152
34
20
16
28
1.94
16833212--16833343
66
2.0
66
84
0
174
35
19
15
28
1.93
16833377--16833432
21
2.6
21
88
2
76
32
16
19
32
1.94
16833603--16833644
21
2.0
21
86
13
61
88
9
2
0
0.61
16835893--16835924
3
10.7
3
100
0
64
34
0
0
65
0.93
16835926--16835957
17
1.9
17
93
6
57
21
0
12
65
1.25
16836187--16836253
26
2.5
26
80
7
73
67
1
2
28
1.14
16836518--16836557
19
2.1
19
86
9
55
75
5
2
17
1.10
16839129--16839419
155
1.9
155
90
1
467
45
10
20
23
1.82
16841103--16841145
16
2.7
16
85
0
59
53
2
25
18
1.56
16841566--16841891
49
6.6
49
77
7
268
34
11
11
42
1.78
16841571--16841860
99
2.9
99
80
4
307
34
11
12
41
1.79
16843564--16843662
50
2.0
50
95
0
180
17
7
26
49
1.72
16852692--16852779
40
2.2
40
93
0
158
31
9
14
44
1.77
16866019--16866067
23
2.1
23
88
0
71
63
0
4
32
1.13
16866152--16866203
19
2.7
19
100
0
104
50
0
0
50
1.00
16866231--16866283
23
2.5
22
85
11
74
64
0
1
33
1.05
16866845--16866905
24
2.5
24
89
7
88
40
3
0
55
1.16
16868028--16868055
2
14.0
2
100
0
56
0
50
0
50
1.00
16871605--16871767
52
3.2
48
73
13
182
52
3
4
38
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16871605--16871786
52
3.6
51
72
14
169
52
3
4
39
1.41
16871595--16871786
104
1.8
104
97
0
366
52
4
4
39
1.42
16875822--16875872
19
2.8
17
80
13
57
52
1
0
45
1.12
16875919--16875951
15
2.2
16
89
10
52
57
12
0
30
1.35
16876680--16876716
18
2.1
18
100
0
74
37
18
5
37
1.74
16877468--16877514
18
2.7
18
76
3
51
4
12
6
76
1.12
16877488--16877537
25
1.9
27
84
8
68
4
14
6
76
1.13
16877842--16877891
12
3.9
13
80
17
52
32
0
2
66
1.03
16878715--16878767
27
2.0
27
85
7
72
11
13
1
73
1.18
16878728--16878768
21
2.0
20
85
4
55
9
14
2
73
1.19
16882448--16882494
20
2.4
19
79
10
51
74
6
10
8
1.22
16892096--16892632
58
9.2
56
82
9
567
35
12
6
45
1.68
16892096--16892632
174
3.1
172
84
5
637
35
12
6
45
1.68
16892693--16892734
4
10.5
4
80
19
52
73
2
2
21
1.06
16892693--16892737
24
2.0
22
91
8
72
75
2
2
20
1.01
16897420--16897483
27
2.3
27
78
2
65
10
0
26
62
1.28
16902633--16902722
16
5.6
16
75
12
85
56
5
10
27
1.54
16904508--16904555
16
3.0
16
73
8
53
50
6
14
29
1.67
16904492--16904566
32
2.3
32
81
6
89
56
6
14
22
1.62
16904702--16904785
40
2.1
40
93
0
141
44
11
17
26
1.84
16906777--16906811
17
2.1
17
88
0
52
71
5
2
20
1.19
16908829--16908965
71
1.9
71
91
2
222
36
17
6
39
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16909481--16909518
17
2.3
17
90
4
60
57
2
0
39
1.12
16909950--16910001
11
4.8
11
83
4
70
53
1
9
34
1.45
16909951--16910002
21
2.5
21
90
0
77
51
1
11
34
1.49
16911032--16911310
138
2.0
139
91
3
454
44
14
12
27
1.82
16912156--16912215
20
3.0
20
80
2
57
43
16
10
30
1.81
16912164--16912218
10
5.4
10
78
10
58
40
18
10
30
1.85
16915347--16915372
10
2.6
10
100
0
52
30
7
19
42
1.79
16918812--16918883
25
2.9
24
73
6
65
70
4
20
4
1.21
16922041--16922081
15
2.8
15
79
17
50
58
0
41
0
0.98
16925112--16925178
33
2.0
33
91
0
107
29
10
17
41
1.83
16930941--16930966
2
13.0
2
100
0
52
50
0
0
50
1.00
16934524--16934557
17
2.1
17
88
5
52
52
11
2
32
1.53
16937154--16937334
48
3.9
48
80
10
205
44
12
12
30
1.78
16937256--16937415
81
2.0
82
84
8
211
45
10
15
29
1.79
16937347--16937467
47
2.6
46
84
7
154
42
11
14
32
1.81
16937219--16937464
128
1.9
128
82
6
311
43
11
14
30
1.81
16938046--16938084
21
1.9
21
85
15
55
17
12
0
69
1.19
16938046--16938084
20
1.9
19
85
10
51
17
12
0
69
1.19
16950580--16950620
16
2.6
16
84
0
55
24
0
7
68
1.15
16954867--16954900
10
3.4
10
92
8
52
91
0
8
0
0.43
16954861--16954902
14
3.0
14
92
0
66
88
0
9
2
0.61
16954867--16954909
16
2.8
16
85
3
52
88
0
11
0
0.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16954861--16954909
24
2.0
26
88
8
75
85
0
12
2
0.68
16954868--16954909
14
3.2
13
90
6
59
88
0
11
0
0.53
16956261--16956349
24
3.9
22
71
15
65
35
8
16
38
1.81
16956247--16956367
46
2.6
45
84
6
147
33
7
19
39
1.79
16956334--16956400
21
3.2
21
72
6
64
25
8
19
46
1.79
16956500--16956543
17
2.6
17
85
0
61
27
4
18
50
1.66
16956492--16956620
68
1.9
67
82
4
161
29
10
13
46
1.77
16956601--16956658
17
3.5
17
76
4
73
22
15
13
48
1.80
16956593--16956664
17
4.4
17
71
5
67
23
12
13
50
1.76
16956691--16956767
35
2.2
35
81
4
93
33
24
12
28
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131