genome.fa.s2.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  66  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12787671--12791964	904	4.9	868	80	8	4565	26	24	23	25	2.00
12791193--12791245	26	2.0	26	96	0	97	26	24	20	28	1.99
12791274--12792792	767	2.0	766	85	2	2057	27	22	23	26	2.00
12792829--12794357	720	2.1	724	87	1	2172	27	24	23	25	2.00
12794257--12794286	4	7.5	4	92	0	51	0	70	26	3	1.03
12794466--12794518	26	2.0	26	88	0	79	28	24	18	28	1.98
12794711--12794762	26	2.0	26	96	0	95	28	26	19	25	1.98
12794467--12794953	244	2.0	244	82	2	584	20	24	30	23	1.99
12796485--12796536	26	2.0	26	96	0	95	26	25	19	28	1.98
12795610--12806385	903	11.9	899	76	8	9413	25	24	24	25	2.00
12797386--12797436	26	2.0	26	96	0	93	27	23	17	31	1.97
12798281--12798333	26	2.0	26	88	0	79	32	24	16	26	1.97
12799386--12799438	26	2.0	26	96	0	97	26	24	22	26	2.00
12800244--12800296	26	2.0	26	100	0	106	26	26	20	26	1.99
12802017--12802069	26	2.0	26	100	0	106	26	26	20	26	1.99
12802905--12802957	26	2.0	26	96	0	97	28	26	18	26	1.98
12805596--12805648	26	2.0	26	96	0	97	28	26	18	26	1.98
12808068--12808120	26	2.0	26	100	0	106	26	26	20	26	1.99
12807181--12815011	864	8.8	898	80	7	8351	26	24	23	25	2.00
12810758--12810810	26	2.0	26	89	7	81	28	26	16	28	1.97
12812492--12812544	26	2.0	26	92	0	88	28	24	18	28	1.98
12813388--12813440	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12814253--12814304	26	2.0	25	88	3	77	30	21	19	28	1.97
12814279--12817190	708	4.1	712	88	2	4238	26	24	23	25	2.00
12817325--12822575	711	7.1	714	76	12	4321	26	24	23	25	2.00
12820374--12822484	708	3.0	707	91	2	3238	27	23	23	25	2.00
12822682--12822731	26	1.9	26	95	0	91	26	24	22	28	1.99
12821844--12827032	901	5.8	873	80	9	5175	26	24	24	25	2.00
12822705--12827032	898	4.9	856	79	10	4134	26	24	24	25	2.00
12825346--12825398	26	2.0	26	85	0	70	28	24	22	24	2.00
12826231--12826282	26	2.0	26	92	0	86	25	25	19	30	1.98
12824475--12827027	882	2.9	890	85	4	3409	26	24	24	25	2.00
12826257--12828436	717	3.1	710	86	3	2991	26	24	22	26	2.00
12829436--12829488	26	2.0	26	89	7	81	30	24	16	28	1.97
12827692--12830465	897	3.1	884	86	3	3638	25	24	24	25	2.00
12830329--12830381	26	2.0	26	89	7	81	26	24	18	30	1.98
12831083--12831135	26	2.0	26	96	0	97	26	26	18	28	1.98
12831952--12832002	26	2.0	26	96	0	93	29	25	17	27	1.98
12833747--12833799	26	2.0	26	89	7	81	30	22	18	28	1.98
12831927--12837397	900	6.1	898	87	2	7442	24	25	24	25	2.00
12836441--12836493	26	2.0	26	96	0	97	28	26	18	26	1.98
12837344--12837395	26	2.0	26	92	3	88	26	23	21	28	1.99
12837888--12838264	159	2.4	159	80	4	386	19	28	28	23	1.98
12838241--12838290	26	1.9	26	91	0	82	30	26	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12839112--12839164	26	2.0	26	96	0	97	26	24	22	26	2.00
12839771--12839825	26	2.1	27	93	3	94	23	25	20	30	1.98
12840251--12840307	26	2.2	26	83	0	69	59	7	7	26	1.49
12839801--12844108	898	4.8	875	82	7	4954	26	24	23	25	2.00
12841563--12841615	26	2.0	26	92	0	88	30	26	15	28	1.96
12842452--12842504	26	2.0	26	96	0	97	26	24	20	28	1.99
12843347--12843402	26	2.2	26	96	0	103	30	25	17	26	1.97
12844082--12844134	26	2.0	26	88	0	79	28	24	16	30	1.97
12843286--12844836	731	2.1	731	88	3	2334	27	23	22	26	2.00
12844974--12845024	26	2.0	26	88	0	75	27	23	21	27	1.99
12845808--12845860	26	2.0	26	92	7	90	26	20	22	30	1.98
12844582--12846237	836	2.0	828	85	3	2250	24	23	25	26	2.00
12846531--12848990	880	2.8	874	86	4	3366	25	23	23	26	2.00
12849012--12849064	26	2.0	26	92	0	88	30	22	16	30	1.96
12849858--12849909	26	2.0	25	88	3	77	30	25	17	26	1.97
12849148--12851676	903	2.8	900	88	2	3626	25	25	23	25	2.00
12852473--12852525	26	2.0	26	96	0	97	26	24	20	28	1.99
12856153--12856205	26	2.0	26	96	0	97	28	26	18	26	1.98
12857036--12857088	26	2.0	26	100	0	106	26	26	20	26	1.99
12857939--12858016	26	3.0	26	94	0	129	30	25	15	28	1.96
12852823--12860496	864	8.7	876	82	6	8325	25	24	24	25	2.00
12860757--12865615	895	5.5	871	87	4	6252	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12863897--12863949	26	2.0	26	88	0	79	26	28	18	26	1.98
12864792--12864844	26	2.0	26	92	0	88	28	24	18	28	1.98
12864818--12866975	711	3.1	705	84	5	2918	27	23	22	25	2.00
12867093--12867148	26	2.2	26	100	0	112	28	21	19	30	1.98
12867997--12868049	26	2.0	26	100	0	106	26	26	20	26	1.99
12866218--12868782	899	2.8	896	87	2	3717	25	25	23	25	2.00
12869615--12869664	26	1.9	26	92	8	84	22	22	20	36	1.96
12868736--12870968	903	2.5	900	86	2	3071	25	24	23	26	2.00
12872076--12872126	26	2.0	26	92	0	84	27	27	13	31	1.94
12873682--12873754	26	2.8	26	100	0	146	24	27	19	28	1.98
12874601--12874653	26	2.0	26	88	0	79	30	24	18	26	1.98
12876188--12876284	26	3.7	26	95	0	176	27	25	18	27	1.98
12877128--12877180	26	2.0	26	96	0	97	26	24	20	28	1.99
12876232--12879628	896	3.9	895	85	7	4220	26	24	23	25	2.00
12879546--12880244	369	1.9	371	86	3	1007	19	26	28	24	1.99
12879931--12882433	903	2.9	848	80	10	2653	25	24	24	25	2.00
12883915--12883947	11	3.0	11	100	0	66	18	36	36	9	1.82
12882974--12886278	885	3.7	883	84	5	4063	26	24	24	24	2.00
12884693--12884745	26	2.0	26	96	0	97	26	24	22	26	2.00
12883809--12886278	894	2.7	898	87	3	3403	26	24	24	24	2.00
12885592--12885645	26	2.1	26	96	0	99	24	24	22	29	1.99
12886400--12887579	627	1.9	626	88	1	1808	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12887834--12887889	26	2.2	26	96	0	103	30	23	19	26	1.98
12888739--12888791	26	2.0	26	96	0	97	28	22	20	28	1.99
12888230--12889440	605	2.0	605	88	1	1777	27	24	23	24	2.00
12889808--12889863	26	2.2	26	78	12	62	55	14	5	25	1.60
12889821--12889879	26	2.2	26	84	3	73	64	8	8	18	1.46
12890058--12890433	159	2.4	159	83	0	448	18	28	29	22	1.98
12890410--12890459	26	1.9	26	91	0	82	26	24	18	32	1.97
12890592--12890643	26	2.0	26	96	0	95	28	25	19	26	1.98
12890249--12890643	184	2.1	184	84	1	504	20	28	28	22	1.98
12890249--12890673	185	2.3	182	82	4	510	21	28	29	21	1.98
12891491--12891543	26	2.0	26	92	0	88	28	22	20	28	1.99
12893248--12893299	25	2.0	25	82	10	61	28	23	19	28	1.98
12894113--12894165	26	2.0	26	100	0	106	26	26	20	26	1.99
12895019--12895068	26	1.9	26	100	0	100	30	26	16	28	1.96
12896776--12896854	26	3.0	26	92	0	131	27	26	18	26	1.98
12897679--12897731	26	2.0	26	88	0	79	30	28	16	24	1.97
12895857--12898870	911	3.4	876	84	6	3797	25	24	24	25	2.00
12900060--12900112	26	2.0	26	100	0	106	30	22	20	26	1.98
12900961--12901013	26	2.0	26	96	0	97	28	26	18	26	1.98
12901714--12901767	27	2.0	27	92	0	90	35	16	29	18	1.93
12898876--12910652	901	13.2	878	76	10	8733	25	24	23	25	2.00
12899186--12905696	900	7.3	893	83	6	6505	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12908119--12908170	26	2.0	26	100	0	104	30	23	19	26	1.98
12909875--12909925	26	2.0	26	96	0	93	27	27	17	27	1.98
12910041--12911439	716	2.0	717	89	2	2148	26	23	22	26	2.00
12913098--12913266	86	2.0	86	87	0	248	49	15	12	23	1.78
12914513--12914565	26	2.0	26	96	0	97	28	26	18	26	1.98
12913184--12915609	900	2.7	897	88	1	3533	25	25	24	24	2.00
12915408--12915460	26	2.0	26	96	0	97	26	24	20	28	1.99
12916437--12916659	120	1.9	118	85	3	313	17	30	28	24	1.97
12919103--12919155	26	2.0	26	96	0	97	26	24	20	28	1.99
12918258--12921667	899	3.8	875	86	4	4526	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131