genome.fa.s24.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  100  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16552613--16552656	22	2.0	22	95	0	79	29	22	15	31	1.95
16552357--16552655	155	1.9	152	80	2	337	24	18	16	40	1.91
16552677--16552747	37	1.9	37	85	0	97	16	22	15	45	1.85
16552990--16553031	21	2.0	21	86	9	59	78	4	4	11	1.06
16554069--16554112	9	4.9	9	82	0	52	27	0	2	70	0.99
16554069--16554127	18	3.3	18	76	2	57	27	0	1	71	0.96
16554213--16554251	21	1.9	20	84	5	51	69	0	7	23	1.14
16554265--16554307	3	14.3	3	85	9	61	65	2	0	32	1.06
16554234--16554303	21	3.4	21	79	12	83	62	4	1	31	1.23
16554557--16554633	15	5.4	14	77	10	77	49	32	2	15	1.58
16554535--16554633	15	6.9	15	73	13	68	51	28	2	18	1.57
16554562--16554683	59	2.1	55	81	8	145	46	30	3	19	1.66
16554670--16554712	20	2.0	22	86	8	63	46	30	2	20	1.63
16554709--16554762	21	2.6	20	72	18	56	57	25	0	16	1.40
16554751--16554808	16	3.8	16	71	15	50	46	25	0	27	1.53
16554737--16554790	14	3.7	14	76	9	54	53	24	0	22	1.46
16556212--16556292	34	2.4	34	82	0	90	38	13	11	37	1.80
16560061--16560104	18	2.4	19	88	3	63	13	2	2	81	0.88
16560573--16560597	2	12.5	2	100	0	50	48	0	0	52	1.00
16560601--16560629	9	3.3	9	95	4	51	0	0	44	55	0.99
16560630--16560672	20	2.1	21	87	12	63	46	0	9	44	1.35
16563813--16563866	27	2.0	28	85	7	76	42	11	11	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16565137--16565189	18	3.0	17	78	13	54	30	0	1	67	1.01
16565138--16565184	19	2.4	19	82	13	60	27	0	2	70	0.99
16565145--16565190	17	2.6	18	89	6	67	32	0	2	65	1.05
16567242--16567368	56	2.3	56	85	8	170	44	11	13	30	1.80
16567374--16567675	49	6.1	49	77	7	261	42	15	9	31	1.80
16567383--16567640	101	2.6	97	80	6	286	41	15	9	32	1.80
16567351--16567741	150	2.6	151	76	8	389	42	16	9	31	1.80
16568544--16568590	20	2.3	20	85	7	60	8	8	2	80	0.97
16568557--16568595	20	1.9	21	89	5	62	15	5	5	74	1.17
16571716--16571749	6	5.7	6	100	0	68	52	0	0	47	1.00
16572162--16572199	18	2.1	18	100	0	76	28	5	31	34	1.80
16574669--16574705	2	18.5	2	94	0	65	54	0	0	45	1.00
16575966--16576014	25	1.9	26	91	4	82	42	6	0	51	1.27
16579545--16579579	18	1.9	18	94	0	61	34	17	11	37	1.85
16583941--16583994	19	3.0	18	81	7	65	27	1	3	66	1.19
16584362--16584699	167	2.0	167	99	0	667	38	7	2	51	1.43
16586244--16586301	23	2.5	24	86	11	75	37	1	0	60	1.07
16586260--16586293	17	2.0	17	94	0	59	32	0	0	67	0.91
16586255--16586303	25	2.0	25	87	0	71	34	0	0	65	0.93
16586668--16586721	19	2.9	18	81	13	56	29	1	3	64	1.21
16601922--16601950	13	2.1	14	93	6	51	51	0	6	41	1.28
16602095--16602144	23	2.1	24	92	7	84	48	18	2	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16603668--16603882	62	3.5	61	71	15	156	35	13	14	36	1.86
16603685--16603851	61	2.7	62	74	14	182	34	12	16	35	1.87
16603685--16603910	123	1.8	123	84	5	314	34	13	15	36	1.86
16603684--16604264	314	1.9	311	79	7	674	39	14	12	34	1.84
16605562--16605591	13	2.3	13	100	0	60	73	0	0	26	0.84
16606530--16606565	4	9.0	4	87	0	54	69	0	5	25	1.10
16606529--16606559	16	1.9	16	100	0	62	64	0	9	25	1.24
16606836--16606944	43	2.5	44	81	3	130	42	19	14	23	1.88
16606812--16607121	44	7.0	44	76	5	209	42	18	13	25	1.86
16607387--16607418	16	2.0	16	93	0	55	34	6	9	50	1.60
16607815--16608017	21	9.6	21	87	2	271	37	14	8	39	1.76
16607813--16608017	43	4.8	43	86	4	281	38	14	8	39	1.76
16607815--16608017	64	3.2	63	87	2	298	37	14	8	39	1.76
16609081--16609124	21	2.2	20	84	11	56	15	11	0	72	1.11
16614794--16614835	20	2.1	20	86	8	59	78	2	0	19	0.86
16618049--16618113	30	2.2	28	78	10	67	33	13	4	47	1.64
16618918--16618956	2	19.5	2	89	0	60	51	5	0	43	1.24
16618956--16618980	2	12.5	2	100	0	50	52	0	48	0	1.00
16621673--16621700	14	2.0	14	100	0	56	21	0	78	0	0.75
16623497--16623532	18	2.0	18	94	0	63	50	13	16	19	1.79
16624972--16625020	18	2.8	17	81	6	71	32	8	2	57	1.40
16625359--16625393	15	2.2	17	90	10	56	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16641895--16641924	2	15.5	2	93	6	53	50	0	0	50	1.00
16642324--16642434	54	2.1	54	89	0	168	37	20	18	23	1.94
16648031--16648090	31	1.9	31	89	0	93	33	11	11	43	1.77
16648087--16648134	24	2.0	24	83	0	60	41	10	10	37	1.74
16651735--16651761	12	2.2	12	100	0	54	18	7	14	59	1.58
16653602--16653642	14	3.1	14	79	13	50	41	0	0	58	0.98
16655686--16655729	19	2.3	18	81	11	52	31	4	6	56	1.46
16656804--16656842	19	2.0	20	90	10	62	41	0	15	43	1.46
16658118--16658202	17	4.9	16	74	11	55	76	0	5	17	0.98
16658113--16658203	39	2.3	40	81	10	109	76	0	5	17	0.96
16658112--16658172	13	4.5	13	72	13	52	77	0	4	18	0.95
16658118--16658196	11	6.9	11	69	16	54	75	0	5	18	0.97
16658155--16658194	22	1.9	20	90	10	62	77	0	2	20	0.88
16658113--16658191	39	2.0	41	85	9	110	74	0	5	20	1.00
16660607--16660898	60	5.1	57	75	13	233	35	14	5	43	1.69
16660604--16660900	116	2.6	117	81	10	344	36	14	6	43	1.70
16660604--16660900	58	5.1	56	75	14	239	36	14	6	43	1.70
16660897--16660926	9	3.4	9	95	4	53	80	0	0	20	0.72
16661867--16661960	22	4.4	21	69	19	61	68	3	3	25	1.20
16661832--16661926	47	2.0	48	82	13	117	70	3	3	23	1.16
16661834--16661933	25	4.2	24	72	22	79	69	3	4	24	1.20
16661880--16661962	21	4.0	20	74	20	71	66	3	3	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16662107--16662152	23	2.0	23	87	8	67	76	2	0	21	0.90
16662338--16662537	46	4.5	45	84	5	264	37	23	18	21	1.94
16662342--16662973	41	15.0	40	78	9	304	38	21	14	24	1.92
16662633--16662972	83	4.1	82	88	2	441	40	22	13	23	1.90
16662633--16662972	41	8.2	41	87	3	450	40	22	13	23	1.90
16662621--16662972	124	2.9	122	88	4	510	39	23	13	23	1.90
16663256--16663349	43	2.2	44	81	11	113	36	17	9	37	1.82
16664701--16664749	12	4.1	12	84	5	55	2	12	0	85	0.68
16668852--16668912	1	61.0	1	73	0	50	86	0	1	11	0.63
16668858--16668911	8	6.5	8	93	6	90	87	0	1	11	0.63
16668864--16668914	27	2.0	26	88	11	70	86	0	1	11	0.66
16668885--16668966	23	3.6	23	73	15	73	71	2	2	23	1.09
16669005--16669039	10	3.5	10	92	0	52	5	34	34	25	1.80
16669884--16669989	21	4.9	21	70	21	74	64	3	4	27	1.31
16670053--16670152	7	13.7	7	72	17	55	70	3	3	24	1.16
16670105--16670169	12	5.3	12	79	18	55	75	3	0	21	0.94
16670082--16670138	25	2.2	25	81	3	69	70	5	3	21	1.22
16670116--16670166	7	7.1	7	81	16	52	76	1	0	21	0.88
16676279--16676319	19	2.1	20	86	4	57	36	17	7	39	1.77
16676775--16676831	3	18.7	3	92	3	96	68	0	1	29	1.00
16685535--16685569	18	1.9	18	88	11	54	80	2	17	0	0.84
16691602--16691661	10	6.1	10	79	11	54	86	3	6	3	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16691611--16691658	1	48.0	1	78	0	51	89	4	4	2	0.64
16692316--16692350	11	3.2	11	95	0	61	25	8	11	54	1.64
16692364--16692421	24	2.4	24	91	0	98	27	15	22	34	1.94
16692698--16692865	44	3.8	44	77	7	169	35	10	14	39	1.81
16692754--16692820	22	3.0	22	68	10	55	34	5	17	41	1.74
16692703--16692883	89	2.0	90	84	5	233	37	9	14	38	1.79
16692698--16692887	45	4.2	45	77	6	181	35	10	13	40	1.79
16692962--16693022	17	3.6	17	78	8	54	29	6	14	49	1.69
16693739--16693784	15	2.9	16	80	6	67	76	4	4	15	1.11
16703467--16703496	12	2.5	12	94	0	51	16	36	10	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129