genome.fa.s24.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  29  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3980796--3980837	1	42.0	1	85	0	57	0	0	7	92	0.37
3980796--3980837	11	3.8	11	90	9	68	0	0	7	92	0.37
3980798--3980834	19	1.9	19	100	0	74	0	0	8	91	0.41
3980580--3980931	118	3.1	117	86	4	477	28	13	11	46	1.78
3980935--3981088	42	3.7	42	95	0	265	33	25	17	23	1.96
3981063--3981116	28	1.9	28	88	0	81	33	33	12	20	1.91
3981091--3981175	41	2.0	42	93	2	145	36	23	16	23	1.94
3981021--3981157	69	2.0	70	89	1	213	35	27	14	21	1.93
3981375--3981511	43	3.2	42	76	13	136	34	16	13	36	1.87
3981695--3981753	22	2.7	22	84	7	75	33	18	8	38	1.81
3982819--3982851	16	2.1	16	88	11	50	6	18	0	75	1.00
3986810--3987157	59	5.8	58	83	10	414	33	13	8	43	1.75
3986962--3987085	66	1.9	66	91	3	205	33	12	7	46	1.70
3986905--3987144	125	1.9	125	89	3	376	33	13	8	44	1.73
3987190--3987252	16	3.9	15	76	12	63	77	1	6	14	1.03
3987185--3987270	6	14.3	6	73	17	54	76	1	6	15	1.05
3987216--3987269	27	2.0	28	89	10	85	77	1	7	12	1.05
3987194--3987269	11	6.9	11	73	13	59	76	1	7	14	1.07
3987207--3987346	12	11.7	11	68	16	57	75	4	2	17	1.10
3987295--3987346	13	4.2	12	83	9	50	80	3	0	15	0.85
3987593--3987634	20	2.0	22	90	9	70	0	40	0	59	0.97
3988189--3988258	8	8.4	8	71	20	54	77	0	1	21	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3988191--3988283	47	2.0	47	83	10	118	73	0	1	25	0.90
3988201--3988283	22	3.5	22	75	14	76	71	0	1	27	0.94
3988189--3988258	17	3.6	18	77	19	70	77	0	1	21	0.85
3988663--3988715	26	2.0	26	100	0	106	26	26	20	26	1.99
3992233--3992282	25	2.0	26	96	4	93	26	28	20	26	1.99
3991512--3993006	748	2.0	745	89	1	2285	27	23	22	26	2.00
3993139--3993191	26	2.0	26	92	0	88	28	24	18	28	1.98
3992258--3995812	876	4.0	874	85	5	4455	25	24	24	25	2.00
3995786--3995864	26	3.0	26	92	0	131	29	24	18	27	1.98
3996629--3996706	26	3.0	26	98	0	147	26	25	19	28	1.99
3997538--3997590	26	2.0	26	96	0	97	26	24	20	28	1.99
3998585--3998637	26	2.0	26	92	0	88	26	28	22	22	1.99
3998312--3998841	173	3.1	172	83	3	636	20	28	27	23	1.99
3998757--3998810	26	2.1	26	89	0	81	29	25	16	27	1.97
3999452--3999826	158	2.4	158	83	3	443	19	30	27	22	1.98
3999800--3999852	26	2.0	26	92	0	88	32	24	15	28	1.95
4000711--4002174	704	2.1	712	88	2	2176	26	24	23	25	2.00
4002762--4002812	26	1.9	26	84	4	66	56	5	11	25	1.57
4002989--4003013	8	3.1	8	100	0	50	0	60	28	12	1.32
4003432--4003484	26	2.0	26	88	0	79	32	26	16	24	1.97
4003190--4003675	242	2.0	244	81	4	563	20	23	32	23	1.98
4004336--4004387	25	2.0	25	88	3	77	28	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4005739--4005817	26	3.0	26	92	0	131	27	25	17	29	1.98
4005791--4009091	877	3.7	874	84	6	4038	25	24	24	25	2.00
4007546--4007598	26	2.0	26	96	0	97	26	24	20	28	1.99
4008443--4008495	26	2.0	26	92	0	88	26	26	20	26	1.99
4006669--4009091	893	2.7	885	84	6	3061	25	24	24	25	2.00
4010627--4010679	26	2.0	26	100	0	106	30	26	16	26	1.97
4010346--4014840	902	5.0	900	83	5	5377	25	24	23	25	2.00
4013302--4013380	26	3.0	26	96	0	140	27	25	18	27	1.98
4014870--4014921	26	2.0	26	96	0	95	28	26	17	26	1.97
4015750--4015802	26	2.0	26	100	0	106	30	26	16	26	1.97
4016638--4016690	26	2.0	26	88	0	79	28	22	18	30	1.98
4017319--4017371	26	2.0	26	96	0	97	26	28	20	24	1.99
4018221--4018273	26	2.0	26	85	0	70	28	20	20	30	1.98
4018966--4019003	17	2.2	17	100	0	76	5	23	44	26	1.74
4018294--4020371	718	2.9	714	86	4	2874	27	23	22	26	2.00
4023801--4023853	26	2.0	26	92	0	88	28	22	22	26	1.99
4021190--4026040	899	5.5	880	83	6	5648	25	24	24	25	2.00
4026366--4026422	26	2.2	25	81	9	69	31	21	14	33	1.92
4025315--4026900	788	2.0	792	86	3	2197	24	25	24	25	2.00
4026114--4030623	884	5.1	892	84	5	5728	25	24	23	25	2.00
4028150--4028200	26	2.0	26	96	0	93	29	25	15	29	1.96
4029936--4029988	26	2.0	26	88	0	79	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4031591--4031667	26	3.0	26	90	0	118	28	27	15	28	1.96
4032520--4032570	26	2.0	26	100	0	102	27	25	19	27	1.99
4031643--4038790	876	7.9	878	74	11	5314	25	24	24	25	2.00
4035011--4035357	159	2.2	158	88	4	504	21	28	27	22	1.99
4035331--4035383	26	2.0	26	96	0	97	28	26	18	26	1.98
4037093--4037144	26	2.0	26	92	3	88	26	23	21	28	1.99
4037991--4038043	26	2.0	26	96	0	97	26	24	20	28	1.99
4039082--4039114	11	3.0	11	90	0	57	18	24	36	21	1.95
4040763--4040815	26	2.0	26	96	0	97	24	26	22	26	2.00
4036216--4040924	902	5.2	902	73	11	3864	25	24	24	25	2.00
4041426--4041476	26	2.0	26	88	0	75	29	25	13	31	1.94
4040255--4041586	662	2.0	666	84	2	1753	26	25	22	25	2.00
4044071--4044123	26	2.0	26	96	0	97	28	26	20	24	1.99
4042252--4045564	903	3.7	899	85	2	4340	26	24	23	25	2.00
4045213--4045244	12	2.7	12	100	0	64	12	37	18	31	1.88
4045824--4045875	26	2.0	26	92	0	86	28	25	19	26	1.98
4047642--4048043	57	6.8	58	84	7	504	35	12	7	44	1.72
4047734--4048039	58	5.0	62	84	7	250	33	12	7	45	1.70
4048076--4048138	16	3.9	15	76	12	63	77	1	6	14	1.03
4048102--4048155	27	2.0	28	88	3	83	75	1	9	12	1.11
4048071--4048142	6	11.8	6	73	18	51	77	1	5	15	1.01
4048178--4048227	4	12.5	4	78	16	50	78	4	0	18	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4048079--4048234	12	12.9	12	67	18	60	74	3	4	17	1.14
4048178--4048234	28	2.1	27	87	9	80	80	3	0	15	0.84
4048181--4048230	24	2.1	24	89	10	77	80	4	0	16	0.87
4049137--4049184	16	2.9	17	81	12	64	79	4	0	16	0.89
4049141--4049181	15	2.8	15	85	10	50	80	4	0	14	0.87
4049228--4049262	11	3.1	12	88	12	56	80	0	0	20	0.72
4049230--4049264	6	5.8	6	90	10	54	80	0	0	20	0.72
4049523--4049567	19	2.4	19	92	3	74	6	6	4	82	0.95
4049419--4049656	126	1.9	125	85	2	325	28	13	11	46	1.78
4049580--4049731	45	3.5	44	69	7	130	37	19	17	25	1.93
4049562--4049745	86	2.1	88	93	2	318	34	17	14	33	1.90
4049562--4049687	45	3.0	41	67	8	108	34	18	15	32	1.92
4049766--4049961	42	4.7	42	92	0	313	33	25	18	22	1.97
4049766--4049961	84	2.3	83	95	0	347	33	25	18	22	1.97
4049936--4049989	28	1.9	28	96	0	99	29	35	14	20	1.93
4049894--4050099	69	3.0	69	94	0	367	33	28	16	22	1.95
4050005--4050058	28	1.9	28	92	0	90	29	33	14	22	1.94
4050033--4050118	41	2.1	42	93	2	147	33	24	17	24	1.96
4050316--4050452	43	3.2	42	78	12	152	35	16	12	36	1.86
4050636--4050694	22	2.7	22	84	7	75	33	18	8	38	1.81
4051765--4051818	9	5.8	10	77	18	55	5	12	0	81	0.85
4051775--4051817	20	2.2	19	95	4	77	4	13	0	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4051765--4051816	19	2.8	19	83	13	72	5	13	0	80	0.88
4051783--4051819	10	3.7	10	85	0	56	2	10	0	86	0.67
4053005--4053054	20	2.5	20	83	3	55	22	16	22	40	1.91
4053504--4053657	28	5.7	27	70	23	94	67	0	3	28	1.11
4053565--4053652	26	3.5	25	75	16	83	68	1	0	30	0.97
4053674--4053708	11	3.1	12	88	12	56	80	0	0	20	0.72
4053676--4053710	6	5.8	6	90	10	54	80	0	0	20	0.72
4054760--4059839	899	5.8	869	82	6	5790	25	24	24	25	2.00
4056494--4056546	26	2.0	26	100	0	106	26	26	20	26	1.99
4057393--4057445	26	2.0	26	100	0	106	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129