genome.fa.s24.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  48  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6718707--6718760	26	2.1	26	89	0	81	46	11	29	12	1.77
6721349--6721377	3	9.7	3	100	0	58	34	31	0	34	1.58
6725402--6725443	19	2.2	19	86	0	57	16	4	23	54	1.61
6725813--6725882	19	3.8	18	71	17	54	31	1	1	65	1.10
6725806--6725865	26	2.3	27	85	5	79	31	1	1	65	1.13
6725821--6725881	19	3.5	17	74	12	61	31	1	1	65	1.12
6727162--6727211	26	2.0	26	84	4	66	2	12	4	82	0.90
6741637--6741678	17	2.5	17	80	7	50	64	7	0	28	1.20
6748498--6748548	22	2.4	21	84	9	68	72	0	25	1	0.95
6748939--6748998	23	2.7	22	71	7	59	48	0	6	45	1.29
6750163--6750199	18	2.0	19	89	5	58	40	0	5	54	1.24
6750935--6750997	27	2.4	26	81	7	74	58	7	15	17	1.60
6751390--6751476	35	2.4	36	75	11	88	34	21	9	34	1.86
6756649--6756793	79	1.8	79	83	4	195	55	10	17	16	1.69
6757592--6758016	83	5.0	83	80	8	440	38	24	9	27	1.86
6757708--6757975	95	3.0	91	82	6	307	38	23	9	27	1.86
6757800--6758016	84	2.6	83	86	2	292	38	25	8	26	1.85
6758294--6758463	90	1.9	90	83	7	220	39	14	16	30	1.88
6758585--6758644	26	2.3	26	85	0	75	33	20	15	31	1.93
6758945--6759053	23	4.7	23	75	0	101	32	21	16	30	1.95
6759263--6759611	124	2.8	126	83	5	395	38	16	12	32	1.86
6759500--6759695	104	1.9	104	86	4	279	35	14	14	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6759920--6759965	24	1.9	24	82	8	58	34	2	8	54	1.43
6759998--6760044	11	4.7	11	75	21	50	78	4	2	14	0.99
6759998--6760066	29	2.4	28	83	11	79	75	7	1	15	1.09
6760000--6760047	18	2.7	18	96	0	87	79	4	2	14	0.98
6774324--6774394	34	2.1	34	91	0	115	33	14	22	29	1.93
6777044--6777181	73	1.9	73	87	0	204	38	11	18	31	1.86
6777000--6777189	37	5.2	37	80	1	193	37	13	16	32	1.87
6778215--6778260	23	2.1	21	88	11	67	26	15	0	58	1.37
6778792--6778840	25	2.0	25	87	0	71	40	8	8	42	1.64
6779039--6779077	20	2.0	20	100	0	78	53	10	0	35	1.35
6779292--6779360	19	3.7	19	83	9	72	13	5	42	39	1.68
6779302--6779360	19	3.2	18	83	7	73	11	3	45	38	1.58
6779322--6779447	31	4.0	30	78	14	96	15	2	38	42	1.60
6779285--6779419	68	2.0	69	80	4	157	14	4	39	41	1.66
6779317--6779472	7	24.3	7	68	21	83	15	1	38	44	1.58
6779353--6779421	19	3.6	19	80	2	66	15	2	36	44	1.62
6779383--6779472	26	3.4	26	81	7	110	16	0	36	46	1.47
6779372--6779481	19	6.1	18	70	22	70	16	0	36	47	1.47
6779457--6779522	30	2.2	30	88	0	96	10	4	40	43	1.59
6783771--6783816	12	3.8	13	80	13	53	36	0	2	60	1.09
6783766--6783817	24	2.0	27	85	10	74	40	0	1	57	1.10
6784872--6784896	10	2.5	10	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6792158--6792207	14	3.3	15	84	13	59	18	0	8	74	1.06
6792177--6792214	6	5.6	7	87	12	53	13	0	13	73	1.09
6792168--6792219	20	2.6	19	85	14	70	15	0	9	75	1.05
6792484--6792694	99	2.2	99	85	3	284	28	12	17	42	1.85
6792514--6792819	99	3.1	99	79	10	297	28	13	18	39	1.89
6792407--6792819	32	12.5	33	72	10	238	28	14	18	38	1.90
6792450--6792819	67	5.6	65	73	10	229	29	13	18	39	1.88
6794804--6794859	21	2.9	19	78	7	60	7	14	0	78	0.95
6804758--6804793	12	2.7	14	91	8	58	16	0	25	58	1.38
6805502--6805582	41	2.0	42	90	2	128	39	13	17	29	1.88
6806917--6806948	3	10.7	3	100	0	64	31	0	0	68	0.90
6813656--6813707	25	2.1	25	92	0	86	38	19	13	28	1.89
6813753--6813805	25	2.1	25	96	0	97	35	16	16	30	1.92
6817134--6817172	19	2.1	19	90	0	60	10	15	0	74	1.07
6817320--6817366	6	7.8	6	90	6	60	17	0	8	74	1.05
6820438--6820557	56	2.2	55	83	1	141	27	17	12	42	1.85
6828158--6828279	63	1.9	63	83	6	158	36	9	13	40	1.76
6828375--6829201	297	2.8	290	83	6	1047	33	15	14	36	1.88
6829956--6830011	25	2.1	27	81	12	64	21	10	5	62	1.47
6840709--6840772	9	7.1	9	73	19	53	71	1	14	12	1.21
6841874--6841941	22	3.1	21	77	8	73	27	7	16	48	1.72
6842218--6842287	17	4.2	17	79	1	79	37	14	10	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6842218--6842320	50	2.0	52	85	7	140	35	15	10	37	1.82
6842347--6842404	17	3.5	16	77	11	55	32	17	20	29	1.95
6842439--6842486	18	2.7	18	93	0	78	31	14	16	37	1.89
6842985--6843019	14	2.5	14	95	0	61	88	0	2	8	0.61
6842992--6843016	13	1.9	13	100	0	50	96	0	0	4	0.24
6843333--6843375	22	2.0	22	85	0	59	6	9	20	62	1.48
6843508--6843559	24	2.1	25	96	3	97	23	7	17	51	1.70
6843987--6844038	13	4.0	14	80	16	58	13	3	7	75	1.17
6844003--6844029	11	2.5	11	100	0	54	18	0	7	74	1.05
6844122--6844156	18	1.9	18	88	0	52	31	5	14	48	1.67
6844125--6844221	42	2.3	42	82	12	119	28	7	13	50	1.68
6850670--6850699	15	2.0	15	93	0	51	20	30	33	16	1.94
6853449--6853487	20	2.0	20	89	0	60	43	2	5	48	1.38
6859663--6859706	15	2.9	15	83	10	63	79	0	4	15	0.89
6862928--6863145	81	2.6	84	86	5	311	35	11	19	33	1.88
6862939--6863208	84	3.2	84	83	7	243	36	12	17	32	1.88
6863243--6863441	80	2.5	80	79	3	202	38	11	14	35	1.82
6865083--6865140	27	2.2	26	82	11	75	3	13	5	77	1.07
6865614--6865667	21	2.6	21	83	13	67	3	12	0	83	0.78
6865616--6865672	22	2.6	22	75	10	62	5	12	0	82	0.82
6865628--6865669	11	3.8	11	80	0	57	0	14	0	85	0.59
6866759--6866872	33	3.5	33	80	7	128	33	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6867388--6867547	46	3.5	46	85	0	212	35	10	10	43	1.74
6868089--6868620	274	1.9	274	95	1	951	36	11	16	35	1.85
6870439--6870492	19	2.7	20	82	8	65	51	33	0	14	1.43
6870618--6870670	19	2.9	18	81	8	63	50	37	1	9	1.46
6872268--6872310	19	2.2	20	87	4	61	65	6	0	27	1.18
6873124--6873157	14	2.4	14	90	0	50	73	8	2	14	1.19
6874824--6874863	15	2.6	16	84	8	55	70	0	0	30	0.88
6874875--6874916	20	2.0	20	86	9	57	71	0	14	14	1.15
6884497--6884575	33	2.4	33	80	6	88	34	21	16	27	1.95
6885114--6885273	46	3.5	46	83	0	212	35	10	10	43	1.74
6885347--6885371	10	2.5	10	100	0	50	84	0	16	0	0.63
6885827--6886357	274	1.9	273	94	1	931	35	11	17	35	1.86
6888173--6888226	19	2.7	20	82	8	65	51	33	0	14	1.43
6888286--6888330	18	2.5	18	96	0	81	46	28	0	24	1.53
6888370--6888422	19	2.9	18	81	8	63	50	37	1	9	1.46
6889399--6889612	115	1.9	115	83	3	279	28	16	22	33	1.95
6890010--6890055	20	2.2	22	84	7	60	63	6	4	26	1.38
6892552--6892592	15	2.7	15	84	3	55	63	0	0	36	0.95
6892604--6892645	20	2.0	20	86	9	57	71	0	14	14	1.15
6893979--6894011	13	2.7	13	90	9	52	72	0	0	27	0.85
6894322--6894358	18	2.1	18	100	0	74	35	27	21	16	1.94
6901505--6901584	10	8.1	10	75	14	53	75	0	15	10	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6904388--6904428	11	3.7	11	93	0	73	21	0	29	48	1.50
6904387--6904428	22	1.9	22	100	0	84	23	0	28	47	1.52
6904465--6904610	52	2.8	51	81	9	159	41	8	23	26	1.83
6917751--6917839	46	1.9	47	86	2	126	32	12	20	34	1.90
6917930--6918469	299	1.8	293	84	5	728	34	14	15	36	1.87
6917930--6918566	299	2.2	295	80	7	695	33	14	15	36	1.88
6922327--6922446	62	1.9	62	83	6	154	33	10	16	40	1.82
6922330--6922460	62	2.1	63	80	8	144	34	12	15	38	1.84
6922516--6922754	125	1.9	125	85	2	329	35	11	17	35	1.86
6923998--6924207	105	2.0	104	82	4	253	34	22	11	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129