genome.fa.s24.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  75  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11846718--11847158	57	7.6	56	78	12	403	35	13	7	43	1.72
11846718--11847158	113	3.8	114	79	11	427	35	13	7	43	1.72
11847150--11847180	16	1.9	16	93	0	53	35	0	3	61	1.12
11847150--11847187	16	2.2	17	86	9	51	39	0	5	55	1.23
11847183--11847214	5	6.6	5	92	7	57	81	0	0	18	0.70
11856963--11857023	28	2.1	28	84	9	77	73	3	1	21	1.06
11858183--11858220	13	2.8	13	84	15	51	78	0	10	10	0.95
11863674--11863724	3	17.3	3	80	11	61	62	0	1	35	1.06
11864380--11864517	17	7.8	17	71	16	77	45	10	15	27	1.80
11864381--11864425	19	2.5	17	89	7	63	46	8	15	28	1.76
11864380--11864518	36	3.9	36	79	5	147	46	10	15	27	1.79
11864510--11864548	17	2.3	17	86	0	51	53	12	5	28	1.60
11864405--11864546	72	2.0	72	83	4	180	47	11	13	27	1.78
11864573--11864605	17	1.9	17	88	11	50	36	15	24	24	1.93
11869421--11869446	4	6.5	4	100	0	52	23	0	0	76	0.78
11874019--11874051	10	3.3	10	88	12	50	57	0	0	42	0.98
11874019--11874069	15	3.5	15	80	17	54	60	1	0	37	1.08
11877923--11877956	16	2.1	16	88	0	50	29	5	0	64	1.17
11890062--11890113	28	1.9	27	84	7	70	55	5	17	21	1.62
11891812--11891963	57	2.7	55	77	10	144	23	17	17	40	1.91
11892359--11892424	31	2.2	30	84	10	82	74	12	1	12	1.15
11892359--11892424	15	4.4	15	77	7	71	74	12	1	12	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11899302--11899608	18	18.6	18	70	19	176	56	2	0	41	1.17
11899306--11899609	8	42.1	7	66	18	103	55	2	0	41	1.17
11899323--11899594	33	8.8	30	72	18	161	55	2	0	40	1.18
11899302--11899592	49	6.1	49	80	14	288	56	2	0	40	1.17
11899442--11899608	21	7.9	21	66	23	66	56	2	0	40	1.12
11899313--11899610	67	4.6	63	72	22	189	56	2	0	40	1.17
11899501--11899609	26	4.0	26	77	13	80	57	2	0	39	1.13
11899501--11899592	31	3.2	27	77	18	80	57	3	0	39	1.15
11899303--11899610	23	13.5	22	68	20	127	56	2	0	40	1.17
11899620--11899685	33	2.0	33	85	8	91	43	0	3	53	1.16
11899620--11899719	32	3.1	32	79	15	91	43	0	2	55	1.11
11899671--11899719	17	2.8	17	78	9	55	44	0	0	55	0.99
11899855--11899897	14	3.0	14	82	3	59	37	4	4	53	1.43
11906119--11906153	13	2.6	14	86	13	56	14	5	0	80	0.89
11906291--11906344	21	2.6	21	80	8	58	35	7	7	50	1.59
11906406--11906473	35	1.9	35	85	8	93	29	5	13	51	1.64
11906781--11907468	22	30.9	22	67	10	164	38	10	5	45	1.62
11907340--11907483	44	3.3	44	75	8	107	40	11	2	45	1.54
11907730--11907806	22	3.5	22	85	0	73	40	9	6	44	1.62
11907755--11907812	22	2.6	22	88	0	89	36	10	3	50	1.54
11907755--11907835	22	3.7	22	84	0	81	35	12	3	48	1.59
11907821--11907877	22	2.6	22	85	0	78	38	5	8	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11907988--11908085	22	4.7	21	76	9	76	38	9	5	46	1.58
11908048--11908086	19	2.1	19	85	0	51	38	5	7	48	1.54
11909940--11910215	57	4.7	58	79	10	294	36	11	6	45	1.66
11909941--11910215	118	2.3	118	89	1	417	36	12	6	45	1.66
11909998--11910223	60	3.8	59	79	9	244	35	12	6	45	1.69
11911853--11911891	19	2.1	19	85	4	53	28	0	17	53	1.44
11912514--11912545	16	2.1	15	94	5	55	50	0	0	50	1.00
11912673--11912741	22	3.1	22	82	13	79	71	8	7	13	1.31
11912704--11912747	22	2.0	22	86	0	61	77	6	6	9	1.13
11914504--11914548	21	2.1	21	84	8	56	53	6	13	26	1.64
11914881--11915110	114	2.0	114	92	1	381	28	26	10	33	1.90
11918550--11918604	5	10.8	5	81	11	67	16	0	3	80	0.86
11918550--11918604	11	5.4	10	82	10	67	16	0	3	80	0.86
11919073--11919112	13	3.2	13	78	7	55	22	5	12	60	1.52
11919541--11919595	26	2.1	26	86	0	74	25	1	29	43	1.65
11920475--11920536	6	10.7	6	79	10	67	19	1	1	77	0.94
11920459--11920535	12	6.8	11	73	14	50	19	5	1	74	1.08
11925290--11925329	12	3.4	12	82	6	55	27	5	5	62	1.37
11925255--11925462	23	9.2	22	72	15	106	27	6	7	59	1.48
11925398--11925449	20	2.6	21	87	6	72	25	3	3	67	1.25
11925387--11925466	30	2.6	34	77	18	93	27	6	5	61	1.41
11926314--11926348	18	2.0	17	94	5	61	45	2	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11928296--11928394	38	2.6	38	79	1	119	41	13	12	33	1.81
11928421--11928489	20	3.3	22	82	6	63	33	15	21	28	1.95
11928436--11928501	20	3.2	20	82	4	69	30	15	24	30	1.95
11928536--11928618	39	2.1	39	86	0	112	48	12	13	26	1.77
11928508--11928593	18	4.2	21	74	12	81	38	15	17	29	1.90
11928508--11928593	21	4.2	20	74	12	77	38	15	17	29	1.90
11928633--11928754	40	3.1	39	79	3	136	45	9	15	29	1.78
11928633--11928694	21	3.1	21	75	13	76	41	6	20	30	1.78
11929264--11929347	32	2.7	31	85	5	107	46	14	9	29	1.76
11937939--11937984	18	2.5	19	89	10	78	45	19	4	30	1.70
11941683--11941730	22	2.2	23	85	7	64	70	6	4	18	1.25
11942347--11942412	26	2.5	26	85	0	87	45	18	13	22	1.84
11946797--11946860	21	3.0	21	82	8	83	45	21	1	31	1.62
11946797--11946859	23	2.8	23	85	4	85	46	20	1	31	1.61
11947370--11947416	17	2.8	17	81	9	60	68	0	2	29	1.02
11947373--11947410	18	2.1	18	85	9	51	71	0	2	26	1.00
11952022--11952068	24	2.0	24	95	0	85	25	4	29	40	1.75
11952334--11952449	58	2.0	58	98	0	223	32	14	21	31	1.93
11965592--11965665	35	2.0	37	84	7	98	48	2	1	47	1.24
11965639--11965701	33	1.9	33	87	6	92	52	3	1	42	1.27
11967295--11967334	20	2.2	19	86	13	57	40	0	0	60	0.97
11967295--11967348	21	2.6	21	82	2	56	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11972597--11972641	23	2.0	23	82	8	56	64	6	4	24	1.37
11974704--11974757	27	2.0	27	85	7	74	27	11	18	42	1.84
11980089--11980130	19	2.2	20	86	4	59	47	0	7	45	1.30
11980730--11980794	21	3.0	21	76	17	62	56	1	7	33	1.37
11982318--11982357	21	1.9	21	84	0	53	62	7	15	15	1.53
11984056--11984099	21	2.1	21	86	0	61	43	0	2	54	1.12
11984056--11984112	30	2.0	28	86	6	78	45	3	1	49	1.29
11985831--11985878	16	2.7	18	87	9	64	66	4	0	29	1.10
11985813--11985858	23	2.0	24	86	4	67	69	0	2	28	1.00
11986113--11986234	10	12.6	9	72	14	73	24	4	4	66	1.29
11986119--11986143	9	2.8	9	100	0	50	12	0	16	72	1.13
11986137--11986242	10	10.5	10	74	5	79	27	4	2	65	1.27
11986138--11986242	30	3.5	29	76	6	93	26	4	2	65	1.26
11989645--11989689	22	2.0	22	83	8	56	11	13	0	75	1.05
11989653--11989699	22	2.2	22	85	11	62	6	12	0	80	0.88
11998173--11998234	24	2.6	24	97	2	117	38	3	3	54	1.32
11999708--11999807	33	3.0	33	92	5	157	38	7	1	54	1.35
12000962--12001016	10	5.3	11	72	12	53	49	1	1	47	1.23
12001546--12001570	2	12.5	2	100	0	50	52	0	0	48	1.00
12009178--12009261	41	2.0	41	90	0	132	26	16	9	47	1.77
12010263--12010291	7	4.1	7	100	0	58	27	13	0	58	1.36
12013008--12013068	31	2.0	31	90	6	97	32	3	18	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12014811--12014868	28	2.0	28	83	9	73	53	3	1	41	1.28
12014844--12014882	20	1.9	21	89	5	62	61	2	5	30	1.31
12018819--12018882	29	2.1	31	88	5	96	35	1	0	62	1.05
12018919--12019020	28	3.5	29	81	11	111	56	0	2	39	1.21
12018922--12019008	29	2.9	29	83	10	104	57	0	3	39	1.16
12020242--12020266	3	8.3	3	100	0	50	68	0	32	0	0.90
12024112--12024144	15	2.2	15	94	0	57	33	18	24	24	1.97
12027837--12027882	20	2.1	23	84	11	62	52	0	2	45	1.13
12027837--12027882	21	2.1	22	84	11	60	52	0	2	45	1.13
12028298--12028350	27	2.0	27	92	7	90	45	0	15	39	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129