genome.fa.s24.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  54  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7709576--7709627	23	2.2	24	82	6	61	57	5	13	23	1.57
7715263--7715313	25	2.0	25	100	0	102	15	11	33	39	1.84
7716694--7716752	31	1.9	31	89	0	91	38	20	8	32	1.83
7717992--7718029	20	1.9	19	89	5	58	63	7	5	23	1.42
7721248--7721295	24	2.0	24	100	0	96	54	4	12	29	1.56
7724435--7724471	15	2.3	17	86	9	51	81	2	8	8	0.97
7725247--7725277	7	4.4	7	95	0	53	25	29	12	32	1.93
7726661--7726695	16	2.2	16	89	0	52	71	0	17	11	1.14
7729413--7729457	20	2.2	20	96	0	81	53	0	0	46	1.00
7732295--7732333	20	2.0	20	90	10	62	7	23	5	64	1.40
7736183--7736553	185	2.0	183	86	3	521	32	14	11	40	1.82
7737579--7737718	46	3.1	46	83	1	165	44	11	9	35	1.73
7737593--7737725	45	2.9	45	84	1	167	45	12	10	31	1.75
7739372--7739503	57	2.3	57	78	0	138	35	21	18	24	1.96
7750392--7750690	150	2.0	148	92	1	499	25	19	9	45	1.80
7750687--7750756	26	2.7	27	82	8	92	1	22	2	72	1.05
7750687--7750777	8	11.0	8	75	13	53	3	21	2	72	1.10
7754663--7754703	20	2.0	21	85	4	57	58	4	14	21	1.55
7756047--7756104	29	2.0	29	93	0	98	43	8	12	36	1.73
7772591--7772627	6	6.3	6	96	3	67	54	0	13	32	1.40
7773139--7773184	16	2.9	16	78	12	51	45	0	2	52	1.13
7773314--7773345	16	2.0	16	93	0	55	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7773319--7773349	11	2.7	12	90	10	55	67	0	0	32	0.91
7775460--7775486	2	13.5	2	100	0	54	51	0	0	48	1.00
7779236--7779284	19	3.0	16	85	14	57	34	0	0	65	0.93
7779264--7779311	22	2.2	21	78	10	53	43	0	0	56	0.99
7779245--7779318	31	2.5	31	76	12	75	43	0	0	56	0.99
7780950--7781012	22	2.9	22	76	9	74	36	9	9	44	1.70
7780849--7781042	101	1.9	101	80	3	228	42	9	9	38	1.69
7783637--7783671	10	3.5	10	88	0	52	51	11	0	37	1.38
7793619--7793644	11	2.4	11	100	0	52	15	0	15	69	1.20
7794647--7794688	20	2.2	19	83	8	50	19	9	2	69	1.28
7794678--7794708	9	3.4	9	95	0	53	16	0	3	80	0.83
7795048--7795097	25	2.0	26	85	11	70	34	4	14	48	1.62
7795754--7795874	45	2.7	43	77	8	118	24	6	9	58	1.54
7804785--7804824	3	13.0	3	94	5	71	35	0	0	65	0.93
7804780--7804824	22	2.0	22	95	0	81	35	2	0	62	1.08
7804785--7804822	19	2.0	19	100	0	76	36	0	0	63	0.95
7806552--7806588	19	1.9	19	94	0	65	27	16	24	32	1.96
7806717--7806767	26	2.0	25	84	7	66	15	9	19	54	1.68
7806748--7806787	20	2.0	20	95	0	71	12	15	30	42	1.83
7807318--7807356	10	3.7	10	86	10	51	23	0	0	76	0.78
7807320--7807358	17	2.4	17	84	16	55	23	0	0	76	0.78
7807546--7807602	3	19.0	3	85	7	71	29	3	1	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7807560--7807614	19	3.1	18	78	17	53	30	3	1	63	1.22
7809222--7809440	109	2.0	105	95	3	393	19	20	12	47	1.82
7809566--7809621	16	3.6	16	80	4	69	32	0	0	67	0.91
7809571--7809622	21	2.4	22	90	6	79	32	0	0	67	0.91
7811311--7811346	10	3.6	10	88	0	54	8	27	11	52	1.65
7811603--7811666	21	3.1	21	90	2	94	12	26	28	32	1.93
7811603--7811689	21	4.2	20	84	8	77	12	25	29	32	1.93
7813054--7813088	16	2.2	16	94	0	61	42	11	14	31	1.81
7814733--7814794	16	4.2	16	68	19	62	35	6	11	46	1.65
7818783--7818825	22	2.0	22	95	0	77	27	16	9	46	1.77
7825627--7825671	23	1.9	24	86	4	65	66	4	6	22	1.33
7828658--7828739	24	3.5	23	74	24	82	19	8	14	57	1.63
7828650--7828743	46	2.0	46	93	0	161	20	8	17	54	1.68
7831831--7831923	37	2.5	36	79	8	96	10	16	7	65	1.45
7834421--7834472	21	2.5	21	90	0	86	28	3	30	36	1.75
7840504--7840554	14	3.6	14	78	17	52	1	15	1	80	0.89
7845012--7845063	21	2.5	21	96	0	95	42	13	11	32	1.80
7846066--7846211	20	6.9	22	73	16	78	31	6	10	51	1.62
7846092--7846331	20	11.9	20	69	19	124	31	5	11	51	1.60
7846070--7846331	41	6.4	41	79	9	275	32	5	11	51	1.60
7846070--7846332	120	2.1	123	84	7	338	31	5	11	51	1.60
7846379--7846453	19	3.8	20	77	15	75	32	2	10	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7846546--7846585	18	2.2	19	86	8	57	32	5	7	55	1.50
7847679--7847744	27	2.5	27	73	11	66	22	12	7	57	1.60
7849557--7849595	20	1.9	21	84	5	53	56	5	25	12	1.57
7854598--7854772	43	4.1	42	81	6	149	29	12	18	40	1.86
7854598--7854772	85	2.1	85	84	6	230	29	12	18	40	1.86
7854684--7854873	101	1.9	100	85	5	267	27	14	17	41	1.88
7854784--7854916	43	3.1	43	78	8	153	28	15	15	41	1.87
7855247--7855284	20	1.9	20	88	0	58	71	2	13	13	1.26
7855903--7856311	21	20.2	20	68	14	143	30	7	12	49	1.67
7855883--7856311	41	10.6	41	80	9	425	31	7	12	49	1.67
7855903--7856311	61	6.7	60	76	11	293	30	7	12	49	1.67
7855923--7856210	39	7.2	40	81	8	150	30	7	12	49	1.67
7856320--7856385	32	2.1	32	85	0	87	27	1	13	57	1.45
7856368--7856416	19	2.5	19	86	6	62	32	4	10	53	1.54
7857622--7857673	12	4.4	12	81	13	54	44	3	0	51	1.19
7858042--7858110	26	2.6	25	76	15	68	13	7	26	53	1.65
7858049--7858137	12	7.0	13	75	10	76	14	8	24	51	1.71
7858525--7858583	3	19.7	3	100	0	118	32	0	0	67	0.91
7858785--7859270	244	2.0	243	94	1	850	48	12	14	23	1.79
7859965--7860031	7	9.3	7	79	12	55	32	0	5	61	1.20
7859971--7860040	15	4.7	15	74	8	54	34	0	4	61	1.16
7860033--7860082	21	2.4	20	80	12	57	32	0	2	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7860655--7860940	32	8.7	34	71	11	150	29	11	19	39	1.87
7860712--7860767	16	3.4	16	69	13	51	32	12	23	32	1.92
7860667--7861007	33	10.5	33	67	12	118	29	12	19	38	1.89
7860829--7861046	66	3.4	65	80	8	214	28	16	20	35	1.94
7861112--7861273	34	4.9	33	71	15	93	30	16	15	37	1.90
7861150--7861427	34	8.4	33	73	10	149	30	16	17	35	1.92
7861628--7861729	22	4.6	22	80	10	111	18	19	26	35	1.95
7862304--7862348	7	6.1	7	89	5	63	17	0	0	82	0.68
7862312--7862353	21	2.0	21	85	4	57	21	0	2	76	0.90
7862303--7862359	29	2.0	29	82	0	69	22	0	3	73	0.98
7864031--7864067	19	1.9	20	94	5	67	5	10	0	83	0.79
7864026--7864068	10	4.2	10	78	3	50	4	11	0	83	0.78
7865739--7865816	4	19.5	4	83	0	102	43	3	28	24	1.71
7865745--7865815	24	3.0	24	100	0	142	42	4	28	25	1.73
7869047--7869101	26	2.1	26	82	0	65	16	5	25	52	1.65
7869480--7869528	3	16.3	3	95	0	89	30	0	2	67	1.02
7870996--7871057	15	4.4	14	74	10	63	29	0	3	67	1.06
7870996--7871057	7	8.7	7	75	10	63	29	0	3	67	1.06
7871067--7871111	3	14.7	3	95	4	81	33	0	0	66	0.92
7877615--7877659	8	5.5	8	81	5	54	11	4	4	80	1.01
7877618--7877672	26	2.2	25	87	9	76	12	7	5	74	1.20
7878191--7878367	25	7.1	25	86	0	230	53	8	11	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7878400--7878471	37	2.0	36	83	8	92	13	15	2	68	1.33
7879000--7879096	43	2.3	41	84	8	131	49	13	2	35	1.54
7879382--7879422	21	2.0	21	85	0	55	43	7	19	29	1.78
7879506--7879739	7	35.7	7	67	15	90	17	1	37	43	1.57
7879506--7879739	13	17.9	13	68	9	84	17	1	37	43	1.57
7879579--7879626	20	2.5	19	82	3	60	16	2	33	47	1.58
7884960--7885082	60	2.0	60	93	0	210	47	8	16	27	1.76
7888865--7888923	26	2.3	26	82	5	66	40	3	1	54	1.27
7894196--7894237	22	1.9	22	85	0	57	11	0	11	76	1.03
7895144--7895407	145	1.8	145	81	3	334	32	10	14	41	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129