genome.fa.s24.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  60  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9041790--9041849	26	2.5	24	82	12	77	28	0	3	68	1.05
9042323--9042377	27	2.0	27	92	0	92	36	16	9	38	1.80
9060810--9060869	30	2.1	30	84	6	79	45	3	1	50	1.28
9061484--9061545	8	8.3	7	73	19	54	16	8	0	75	1.02
9061481--9061529	21	2.4	20	81	18	57	14	12	0	73	1.10
9061486--9061543	29	2.0	30	86	10	84	17	8	0	74	1.06
9061488--9061528	22	2.0	22	85	9	59	14	9	0	75	1.04
9061924--9061966	21	2.1	21	95	4	79	34	23	4	37	1.76
9065793--9065853	32	1.9	32	86	0	86	8	11	1	78	1.02
9066642--9066692	24	2.2	23	86	6	68	3	11	1	82	0.89
9070323--9070379	10	5.6	11	84	10	61	35	0	1	63	1.05
9070323--9070376	21	2.6	22	86	11	71	37	0	1	61	1.07
9070325--9070379	11	5.5	10	81	14	69	34	0	1	63	1.05
9073473--9073514	15	2.5	17	82	17	52	52	7	4	35	1.50
9074653--9074682	10	3.0	10	100	0	60	70	0	20	10	1.16
9075109--9075150	17	2.5	17	84	3	59	61	2	0	35	1.09
9087457--9087522	33	2.1	31	82	5	78	15	6	10	68	1.38
9089303--9089426	7	17.7	7	67	25	59	16	1	38	43	1.57
9089311--9089367	11	4.9	11	79	12	69	17	1	36	43	1.60
9089304--9089374	18	3.9	18	83	7	99	18	1	36	43	1.59
9089322--9089375	25	2.2	25	90	6	83	18	1	35	44	1.61
9089291--9089388	36	2.7	36	82	4	117	19	1	36	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9089339--9089427	25	3.5	25	83	4	90	15	1	39	43	1.54
9089443--9089473	14	2.2	14	100	0	62	32	0	19	48	1.49
9090176--9090334	80	2.0	80	92	0	264	28	13	23	34	1.92
9091969--9092066	49	2.0	49	86	7	137	46	14	8	30	1.73
9092359--9092454	30	3.2	29	83	12	115	36	17	6	39	1.75
9097668--9097753	6	13.8	6	76	11	66	66	5	0	27	1.15
9098007--9098072	29	2.3	28	76	2	69	57	0	10	31	1.33
9101718--9101742	1	25.0	1	100	0	50	100	0	0	0	0.00
9106017--9106065	19	2.7	18	81	12	55	61	2	0	36	1.08
9115618--9115951	58	5.7	57	84	8	413	35	13	7	44	1.72
9122884--9123590	349	2.0	349	96	0	1306	28	15	22	32	1.95
9127050--9127075	2	13.0	2	100	0	52	50	0	0	50	1.00
9129721--9129766	17	2.9	16	83	6	58	63	0	0	36	0.95
9129723--9129772	15	3.2	15	78	15	57	66	0	0	34	0.92
9142758--9142806	3	16.3	3	100	0	98	67	0	0	32	0.91
9145533--9145562	2	15.0	2	100	0	60	50	0	50	0	1.00
9148904--9148933	3	10.0	3	92	0	51	30	0	33	36	1.58
9148903--9148932	15	2.0	15	100	0	60	26	0	33	40	1.57
9154590--9154627	6	6.3	6	82	11	51	81	0	15	2	0.80
9160878--9160922	24	1.9	24	90	4	74	68	8	6	15	1.36
9160878--9160928	24	2.1	23	85	7	66	68	7	7	15	1.37
9162013--9162045	15	2.2	15	94	0	57	39	24	12	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9162207--9162333	56	2.3	55	81	5	139	50	15	11	22	1.76
9169578--9169627	20	2.7	18	84	6	55	52	16	10	22	1.73
9169498--9169788	55	5.4	53	73	11	144	45	13	13	27	1.81
9169472--9169823	18	19.7	18	73	10	204	44	12	14	28	1.81
9169472--9169769	52	5.5	55	77	8	242	44	13	14	27	1.82
9169573--9169822	88	2.8	89	83	6	274	44	13	14	27	1.82
9169751--9169897	25	5.7	26	68	23	87	46	10	12	31	1.75
9169831--9169940	8	12.6	8	66	19	51	45	10	12	31	1.75
9169825--9169914	29	3.4	26	77	11	92	44	8	12	34	1.73
9169902--9169968	25	2.7	25	92	0	116	49	11	11	26	1.74
9169831--9170010	68	2.5	72	83	8	235	45	9	13	31	1.76
9169957--9170015	28	2.1	29	83	3	75	42	10	18	28	1.83
9169927--9170121	90	2.2	90	89	0	300	43	11	14	30	1.81
9169927--9170121	47	4.3	44	74	11	173	43	11	14	30	1.81
9170112--9170253	23	6.4	23	71	10	89	42	14	9	34	1.77
9170194--9170260	21	3.1	21	70	10	64	44	13	7	34	1.72
9170407--9170684	39	7.2	37	77	8	250	43	19	14	23	1.87
9170410--9170684	77	3.6	77	80	3	313	43	19	14	22	1.87
9170410--9170684	116	2.4	115	81	7	315	43	19	14	22	1.87
9170718--9170895	91	2.0	91	88	0	266	43	9	14	32	1.77
9172259--9172284	11	2.4	11	100	0	52	0	11	0	88	0.52
9172268--9172361	40	2.5	38	84	6	111	9	19	0	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9172292--9172374	38	2.2	37	82	8	96	10	21	0	67	1.21
9172676--9172713	17	2.2	17	86	9	51	15	15	0	68	1.22
9174600--9174714	44	2.6	44	88	0	167	37	17	19	26	1.93
9175036--9175061	13	2.0	13	100	0	52	38	15	15	30	1.88
9175684--9175747	29	2.2	28	97	2	119	45	7	15	31	1.75
9177680--9177725	14	3.3	14	84	0	56	17	2	4	76	1.06
9177744--9177810	27	2.5	28	83	9	77	19	1	4	74	1.07
9177760--9177806	18	2.6	18	80	12	60	19	0	6	74	1.03
9177888--9178098	106	2.0	105	82	8	259	39	6	11	43	1.66
9181395--9181420	13	2.0	13	100	0	52	38	0	0	61	0.96
9182628--9182684	27	2.2	26	84	9	71	45	0	3	50	1.18
9182796--9182831	15	2.4	15	90	0	54	36	0	2	61	1.11
9185395--9185455	30	2.0	30	96	0	113	40	11	16	31	1.84
9190022--9190115	46	2.0	46	100	0	188	24	14	17	43	1.86
9194205--9195093	444	2.0	444	83	3	1135	27	17	11	43	1.84
9198206--9198249	19	2.2	20	84	8	54	63	0	4	31	1.14
9198649--9198702	20	2.7	20	79	0	72	35	20	18	25	1.95
9199716--9199763	24	2.0	24	95	0	87	41	10	0	47	1.37
9200475--9200518	12	3.8	12	84	3	63	65	2	0	31	1.05
9203590--9205488	589	3.2	586	83	6	2375	41	7	10	41	1.67
9208710--9208757	19	2.8	16	76	17	51	27	2	2	68	1.11
9210842--9210885	20	2.1	21	83	4	54	15	2	6	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9218308--9218360	17	3.2	17	77	20	67	64	0	35	0	0.94
9219050--9219081	7	4.4	7	92	7	55	68	0	3	28	1.04
9222252--9222300	17	2.8	18	75	12	57	83	6	2	8	0.87
9222254--9222300	21	2.3	20	82	10	51	85	4	2	8	0.81
9223784--9223900	41	2.9	40	81	2	108	33	19	13	33	1.91
9223935--9224089	81	1.9	80	83	6	197	34	18	11	35	1.87
9223812--9224104	82	3.6	82	73	10	199	34	19	12	33	1.89
9225239--9225321	33	2.5	33	82	7	105	34	15	13	36	1.87
9225370--9225487	34	3.5	34	75	10	109	23	8	17	50	1.74
9225441--9225503	33	1.9	33	83	0	81	26	11	15	46	1.80
9225576--9225933	34	10.3	34	74	9	159	29	9	19	41	1.83
9225714--9225790	38	2.0	38	82	5	93	23	9	19	48	1.77
9225773--9225933	69	2.3	68	80	7	164	33	8	18	39	1.82
9225670--9225931	35	7.5	35	72	11	146	31	8	19	40	1.82
9226912--9226942	15	2.1	15	93	0	53	67	22	0	9	1.19
9227471--9227508	15	2.5	15	86	0	58	63	0	36	0	0.95
9227846--9227888	14	2.9	15	77	19	54	55	0	6	37	1.27
9232262--9232286	2	12.5	2	100	0	50	48	0	0	52	1.00
9233581--9233634	27	2.0	27	92	0	90	29	16	31	22	1.96
9235384--9235415	7	4.6	7	96	0	55	18	31	21	28	1.97
9235663--9235738	33	2.2	36	75	20	88	31	13	11	43	1.80
9235671--9235737	33	2.0	33	88	5	100	29	14	13	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9246307--9246341	18	2.1	16	89	10	52	2	20	0	77	0.90
9247975--9248049	39	2.0	38	84	5	98	16	5	5	73	1.20
9248041--9248082	17	2.6	16	82	14	50	11	0	7	80	0.88
9248041--9248091	18	2.9	17	83	11	59	11	0	7	80	0.90
9248425--9248473	22	2.2	22	88	0	71	22	14	24	38	1.91
9248329--9248586	125	2.1	124	81	3	295	32	11	18	37	1.87
9248447--9248666	103	2.1	103	88	2	325	34	14	16	35	1.89
9248447--9248679	104	2.2	103	85	5	326	33	13	17	35	1.89
9248673--9248715	22	2.0	22	95	0	77	18	11	30	39	1.86
9248788--9248863	23	3.3	23	83	0	98	34	19	21	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129