genome.fa.s24.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  102  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16874309--16874384	38	2.1	37	83	11	95	81	0	11	6	0.86
16874307--16874380	10	7.9	9	77	16	62	79	0	13	6	0.91
16874307--16874384	29	2.8	27	83	12	104	80	0	12	6	0.88
16875492--16875566	21	3.6	21	76	3	80	34	9	20	36	1.84
16875519--16875687	79	2.1	80	86	1	232	39	8	16	36	1.79
16875596--16875648	21	2.6	20	79	5	61	43	7	13	35	1.72
16875802--16875849	24	2.0	24	87	0	69	33	14	14	37	1.87
16875720--16876063	114	3.0	114	89	5	518	34	14	15	34	1.88
16876341--16876452	41	2.7	42	84	2	163	25	9	19	45	1.81
16876335--16876470	42	3.3	42	82	4	170	26	9	19	44	1.82
16876424--16876705	45	6.4	44	82	4	316	23	13	19	43	1.86
16876447--16876705	88	2.9	88	85	5	335	23	14	18	42	1.87
16876424--16876705	133	2.1	133	84	2	361	23	13	19	43	1.86
16878309--16878364	3	18.7	3	82	10	62	28	3	0	67	1.07
16878457--16878697	59	4.2	56	77	14	190	49	4	10	35	1.59
16879760--16879795	2	18.5	2	94	5	65	50	0	0	50	1.00
16881491--16881516	8	3.2	8	100	0	52	11	0	0	88	0.52
16882719--16882755	19	1.9	19	88	0	56	45	2	8	43	1.47
16882728--16882765	20	1.9	19	89	5	58	47	0	7	44	1.32
16884677--16884716	19	2.1	19	90	0	62	42	0	10	47	1.37
16884853--16884911	25	2.4	24	86	8	82	37	18	8	35	1.81
16885148--16885188	17	2.4	18	76	12	50	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16885696--16885730	16	2.1	16	89	5	52	65	5	2	25	1.28
16888283--16888387	52	2.0	52	90	3	167	26	20	7	44	1.78
16888694--16888776	31	2.7	30	83	5	103	26	20	18	34	1.95
16889114--16889156	16	2.6	16	88	3	59	55	25	2	16	1.53
16889377--16889451	3	25.3	3	87	12	111	33	0	2	64	1.08
16896394--16896439	18	2.6	18	83	10	51	71	0	26	2	0.97
16896707--16896754	8	6.0	8	76	9	53	18	0	2	79	0.84
16896728--16896760	16	2.0	17	88	5	50	33	0	3	63	1.10
16899106--16899154	25	2.0	25	83	0	62	57	0	34	8	1.29
16905057--16905141	43	2.0	42	90	2	134	27	16	15	41	1.88
16906141--16906165	2	12.5	2	100	0	50	52	0	0	48	1.00
16916469--16916509	2	20.5	2	100	0	82	51	0	0	48	1.00
16917461--16917505	18	2.4	18	81	3	54	4	11	2	82	0.91
16922764--16922811	19	2.3	21	82	10	64	50	2	0	47	1.12
16922790--16922852	14	3.9	17	78	19	64	41	0	0	58	0.98
16922825--16922874	19	2.5	20	79	17	59	48	0	0	52	1.00
16926091--16926115	9	2.8	9	100	0	50	24	12	28	36	1.91
16927977--16928009	12	2.8	12	90	4	50	12	3	9	75	1.14
16939111--16939165	18	2.9	19	69	15	51	36	0	0	63	0.95
16939319--16939373	25	2.2	25	83	6	67	54	1	1	41	1.21
16939594--16939635	21	2.0	21	85	0	57	57	2	2	38	1.25
16939663--16939701	20	2.0	20	85	10	53	51	5	2	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16939717--16939755	14	2.9	14	88	3	53	46	0	0	53	1.00
16943698--16943738	16	2.7	15	88	7	64	68	0	0	31	0.90
16944144--16944189	19	2.3	20	82	10	60	73	15	2	8	1.16
16944891--16944921	2	15.5	2	100	0	62	51	0	48	0	1.00
16946612--16946710	32	3.1	31	77	12	94	50	7	1	41	1.36
16946882--16946951	29	2.4	29	79	15	81	60	1	2	35	1.21
16946962--16947005	22	2.1	21	87	8	63	47	2	0	50	1.13
16947942--16947969	6	4.7	6	100	0	56	67	0	0	32	0.91
16962334--16962371	19	2.1	18	90	5	58	36	0	0	63	0.95
16969242--16969340	50	2.0	50	82	11	123	8	32	7	52	1.58
16969327--16969352	13	2.0	13	100	0	52	0	15	15	69	1.20
16970067--16970097	2	15.5	2	100	0	62	51	0	0	48	1.00
16971784--16971846	31	2.1	31	96	3	119	44	14	9	31	1.77
16972519--16972553	17	2.1	17	89	5	54	54	5	2	37	1.39
16974110--16974167	28	2.1	28	100	0	116	31	10	15	43	1.80
16976276--16976337	10	6.3	10	74	10	56	35	1	4	58	1.29
16976261--16976330	30	2.2	30	82	7	86	40	1	5	52	1.34
16976272--16976374	37	3.2	31	75	16	100	33	0	6	59	1.30
16976304--16976364	18	3.5	16	75	18	59	31	1	8	59	1.37
16976297--16976373	19	4.1	18	79	12	84	32	1	7	58	1.35
16976303--16976379	37	2.1	37	97	0	145	28	1	9	61	1.35
16983584--16983647	32	2.0	32	82	11	78	14	18	9	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16984726--16984902	55	3.2	55	83	2	185	48	9	13	29	1.73
16984830--16985132	159	1.9	160	82	2	385	44	10	17	28	1.81
16986428--16986475	19	2.5	19	79	0	60	39	10	10	39	1.74
16990202--16990241	3	13.3	3	100	0	80	65	0	0	35	0.93
16991792--16991832	3	13.7	3	94	0	73	68	29	0	2	1.03
16994586--16994805	98	2.2	99	95	3	388	36	5	11	45	1.64
16995059--16995128	14	5.3	13	74	19	56	74	2	2	20	1.08
16996366--16996509	65	2.2	64	83	3	173	48	12	19	19	1.80
17001156--17001190	16	2.2	16	89	0	52	5	20	5	68	1.31
17002569--17002620	21	2.5	21	90	6	79	50	0	0	50	1.00
17002569--17002620	22	2.5	22	93	6	90	50	0	0	50	1.00
17002690--17002715	10	2.6	10	100	0	52	0	26	50	23	1.50
17002725--17002753	11	2.6	11	100	0	58	20	62	17	0	1.33
17007985--17008081	37	2.6	38	83	9	126	36	12	13	38	1.82
17008230--17008303	3	24.3	3	91	2	121	31	1	0	67	0.99
17008906--17008937	3	10.7	3	100	0	64	34	0	31	34	1.58
17008827--17009042	111	1.9	111	100	0	432	33	16	12	37	1.87
17009017--17009042	3	8.7	3	100	0	52	34	0	30	34	1.58
17022132--17022158	8	3.4	8	100	0	54	51	11	0	37	1.37
17024558--17024597	5	7.8	5	85	2	53	75	0	7	17	1.03
17024554--17024596	10	4.4	10	91	2	70	74	0	9	16	1.06
17024554--17024603	20	2.6	19	87	9	75	76	0	8	16	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17025518--17025693	50	3.5	50	87	4	246	32	11	14	41	1.82
17025682--17025811	44	3.0	44	82	2	145	31	10	12	45	1.76
17029055--17029084	3	10.0	3	100	0	60	66	0	0	33	0.92
17029285--17029319	16	2.2	16	89	0	52	68	0	17	14	1.21
17032969--17033039	34	2.1	35	86	2	99	29	8	15	46	1.75
17038965--17039047	21	3.9	22	78	10	84	53	1	3	42	1.26
17038996--17039144	18	9.1	18	65	25	57	51	1	2	45	1.21
17039006--17039144	33	4.3	32	73	15	110	51	1	1	46	1.19
17039254--17039305	15	3.3	15	78	7	59	50	0	0	50	1.00
17039233--17039305	32	2.2	32	86	11	96	49	0	0	50	1.00
17039233--17039304	16	4.4	17	78	15	80	50	0	0	50	1.00
17039432--17039469	14	2.8	14	84	4	51	42	5	0	52	1.24
17043006--17043053	22	2.2	22	92	0	78	31	22	8	37	1.84
17044712--17044744	17	1.9	17	93	0	57	54	0	0	45	0.99
17044711--17044744	8	4.1	8	88	7	50	52	0	0	47	1.00
17046717--17046762	2	25.0	2	83	16	64	54	0	0	45	0.99
17047832--17047871	21	1.9	21	85	10	55	62	0	5	32	1.17
17049724--17049769	16	2.9	16	100	0	92	50	13	13	23	1.76
17056111--17056363	89	2.8	89	82	7	312	54	8	5	30	1.54
17057518--17057577	29	2.1	29	84	9	79	35	5	0	60	1.19
17057561--17057602	22	1.9	22	85	9	59	52	2	0	45	1.13
17059166--17059197	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17068221--17068310	29	3.1	28	77	16	85	37	4	2	55	1.32
17074036--17074079	12	3.7	12	84	6	54	25	0	61	13	1.32
17074057--17074132	36	2.1	36	90	0	116	17	3	59	19	1.53
17079290--17079323	18	1.9	18	88	5	52	20	2	0	76	0.92
17079303--17079344	22	1.9	22	95	0	75	21	0	2	76	0.90
17079579--17079627	25	2.0	25	83	0	62	20	4	6	69	1.27
17080265--17080315	20	2.5	20	80	3	66	49	0	3	47	1.20
17086308--17086559	126	2.0	126	97	1	479	31	10	24	32	1.90
17088866--17088902	10	3.7	10	85	0	56	43	0	0	56	0.99
17088860--17088912	20	2.7	20	74	8	56	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129