Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  129  of  129  ( 15374 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22956019--22956072
17
3.2
17
78
0
63
24
20
12
42
1.87
22956028--22956093
34
1.9
34
84
6
89
27
18
13
40
1.88
22956669--22957670
120
8.4
120
77
6
771
18
20
15
45
1.86
22956639--22957735
240
4.6
239
76
4
865
18
20
15
45
1.85
22956674--22957690
359
2.8
357
78
5
885
18
20
15
45
1.86
22957869--22958037
3
58.7
3
72
14
106
36
1
4
58
1.25
22958104--22958185
37
2.2
37
86
4
112
21
9
28
40
1.85
22958535--22958732
95
2.1
95
100
0
396
32
13
29
24
1.93
22961393--22961443
27
1.9
27
84
4
68
52
1
1
43
1.23
22961401--22961487
32
2.6
34
85
8
117
47
1
3
48
1.26
22961737--22961770
12
2.8
12
86
4
50
26
0
2
70
1.01
22961704--22961765
31
2.0
32
87
9
92
20
1
4
72
1.12
22961726--22961762
19
1.9
19
88
0
56
21
0
2
75
0.92
22961703--22961770
25
2.4
28
79
18
70
23
1
4
70
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129

The End!