genome.fa.s24.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  50  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7058536--7058587	19	2.7	19	90	0	86	40	21	21	17	1.91
7058826--7058916	22	4.2	22	65	19	66	50	14	2	32	1.55
7058819--7058896	41	1.9	41	89	5	122	48	15	1	34	1.53
7058866--7058922	22	2.6	22	76	15	64	52	14	1	31	1.51
7058869--7059185	45	7.0	45	75	9	241	44	12	8	34	1.73
7058860--7059185	137	2.4	135	81	5	379	43	13	7	34	1.73
7058987--7059155	22	7.5	22	69	13	74	44	12	7	34	1.71
7058866--7059097	23	10.3	22	65	12	94	44	13	8	33	1.73
7059997--7060067	17	4.5	16	77	16	69	76	2	1	19	0.99
7060484--7060526	20	2.1	21	86	4	61	32	18	2	46	1.62
7060533--7060581	20	2.5	20	86	6	64	48	30	4	16	1.64
7060975--7061010	3	12.3	3	88	5	56	63	0	2	33	1.08
7061425--7061547	56	2.2	56	88	0	183	43	17	21	18	1.89
7061247--7061659	176	2.3	176	84	1	531	43	15	22	18	1.88
7061481--7061978	120	4.2	120	79	2	507	44	15	22	18	1.87
7061481--7061929	240	1.9	240	85	1	632	44	16	22	17	1.87
7062169--7062333	69	2.4	69	82	0	195	40	13	19	27	1.89
7062287--7062397	52	2.1	52	83	0	141	32	15	21	30	1.94
7062569--7062774	114	1.8	114	80	4	254	37	14	25	22	1.92
7067520--7067578	17	3.4	18	78	15	54	30	0	10	59	1.30
7067535--7067577	18	2.2	20	88	8	63	27	0	11	60	1.31
7067777--7067822	17	2.7	18	75	24	55	73	2	4	19	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068719--7068776	3	19.7	3	81	10	66	63	3	0	32	1.11
7071948--7072011	33	2.0	31	84	6	83	50	4	17	28	1.66
7078038--7078226	65	2.9	65	87	0	261	50	10	10	29	1.69
7081308--7081334	4	6.8	4	100	0	54	0	22	0	77	0.76
7086905--7087495	295	2.0	295	96	0	1103	49	9	3	36	1.55
7091722--7091846	18	7.1	17	63	20	51	31	4	27	37	1.75
7091723--7091819	18	5.6	18	72	9	58	30	4	26	38	1.75
7091789--7091840	20	2.7	20	77	11	56	34	3	26	34	1.75
7095380--7095420	20	2.0	20	85	0	55	70	12	0	17	1.16
7096631--7096666	18	1.9	19	88	5	56	8	8	8	75	1.21
7104374--7104398	13	1.9	13	100	0	50	64	0	12	24	1.27
7104738--7105049	49	6.3	48	75	15	176	52	6	14	25	1.65
7104795--7104917	52	2.4	51	81	15	132	57	3	13	26	1.51
7104776--7105060	49	5.8	48	75	11	220	52	6	15	26	1.66
7104838--7105060	96	2.3	98	80	9	242	53	6	15	24	1.64
7105026--7105165	36	3.8	36	72	14	113	50	8	13	27	1.70
7105193--7105296	36	2.9	36	82	2	138	45	8	16	29	1.77
7105073--7105342	72	3.8	72	75	12	181	48	8	15	27	1.73
7107389--7107415	12	2.2	12	100	0	54	59	14	0	25	1.36
7107746--7107801	26	2.2	25	90	3	85	23	14	19	42	1.88
7107998--7108050	13	4.0	12	81	16	52	24	1	0	73	0.93
7108003--7108051	21	2.3	22	86	10	66	26	2	0	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7108003--7108044	8	5.6	8	81	16	54	23	2	0	73	0.94
7108012--7108054	14	3.1	14	81	15	54	25	4	0	69	1.07
7108197--7108249	3	17.0	3	77	14	54	32	1	3	62	1.24
7114384--7114412	2	14.5	2	100	0	58	48	0	0	51	1.00
7119475--7119510	17	2.1	17	94	0	63	30	11	16	41	1.83
7119513--7119546	15	2.3	15	89	0	50	44	5	5	44	1.52
7122737--7122791	14	4.1	14	77	13	62	16	5	25	52	1.65
7124524--7124557	17	2.1	15	89	10	50	23	8	5	61	1.47
7126748--7126884	70	2.0	70	84	5	179	51	9	14	24	1.72
7126818--7126976	55	2.9	55	80	3	176	45	8	16	30	1.76
7128328--7128366	20	1.9	21	85	15	55	7	7	10	74	1.22
7132585--7132655	4	17.5	4	75	16	58	76	1	1	21	0.95
7132585--7132658	20	3.6	19	77	15	69	75	1	1	21	0.95
7132585--7132658	16	4.9	14	77	22	71	75	1	1	21	0.95
7133957--7133994	13	3.0	13	85	14	53	31	0	0	68	0.90
7135746--7135780	15	2.4	15	90	4	54	62	0	0	37	0.95
7136520--7136553	18	1.9	18	88	5	52	58	0	0	41	0.98
7145750--7145786	13	2.8	13	91	4	56	21	5	8	64	1.40
7150880--7151017	69	2.0	69	89	0	213	31	15	21	31	1.94
7153574--7153620	20	2.4	19	82	3	58	23	0	2	74	0.93
7153576--7153627	20	2.7	19	75	21	54	23	0	1	75	0.91
7153864--7153957	14	6.8	14	75	2	82	20	6	20	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7153891--7153942	27	1.9	27	88	0	77	17	5	21	55	1.62
7153919--7153979	14	4.4	14	80	0	59	24	6	16	52	1.67
7153869--7153979	55	2.0	56	82	1	134	22	7	19	50	1.72
7154190--7154232	8	4.6	9	83	16	52	23	2	0	74	0.93
7154450--7154509	3	20.3	3	79	3	68	31	1	5	61	1.27
7154551--7154655	34	3.2	33	80	10	124	51	9	15	23	1.72
7155613--7155646	1	34.0	1	100	0	68	0	0	0	100	0.00
7156201--7156239	18	2.1	19	90	4	62	28	0	2	69	1.02
7156202--7156292	31	3.3	26	70	18	67	28	1	4	65	1.18
7156320--7156361	19	2.3	19	84	16	61	26	2	0	71	0.98
7156327--7156362	18	2.1	18	89	5	56	25	2	0	72	0.98
7156329--7156369	17	2.3	19	87	8	59	26	4	0	68	1.10
7156673--7156729	10	5.6	10	75	8	53	5	1	8	84	0.84
7156674--7156730	25	2.3	24	76	11	62	7	1	8	82	0.91
7156686--7156729	19	2.3	19	84	7	54	4	2	9	84	0.85
7158731--7158768	20	2.0	20	84	5	51	57	0	0	42	0.98
7161853--7161898	2	23.0	2	100	0	92	0	50	0	50	1.00
7173123--7173260	69	2.0	69	89	0	213	31	15	21	31	1.94
7173992--7174044	23	2.3	23	80	9	54	58	3	1	35	1.27
7175826--7175865	7	5.4	7	85	8	53	20	0	2	77	0.88
7175817--7175871	22	2.3	25	76	20	64	23	0	1	74	0.91
7175826--7175865	15	2.7	14	85	11	53	20	0	2	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7176698--7176757	3	20.3	3	79	3	68	31	1	5	61	1.27
7176799--7176903	34	3.2	33	78	10	115	50	9	15	24	1.73
7177655--7177705	24	2.1	24	85	7	68	7	27	13	50	1.69
7177852--7177906	28	2.0	28	85	0	74	0	12	12	74	1.07
7177873--7177911	18	2.2	18	86	4	53	0	5	15	79	0.90
7178414--7178438	10	2.5	10	100	0	50	28	0	0	72	0.86
7178430--7178464	15	2.3	15	90	9	54	25	0	5	68	1.11
7178428--7178482	23	2.4	23	84	0	74	29	1	5	63	1.27
7178411--7178484	8	9.2	8	77	11	53	29	1	4	64	1.20
7178412--7178505	25	3.7	25	75	13	86	26	1	4	68	1.15
7178531--7178573	19	2.2	20	80	12	54	27	2	0	69	1.00
7178602--7178629	12	2.3	12	100	0	56	32	0	7	60	1.24
7179198--7179405	35	5.9	35	70	5	125	52	9	15	21	1.71
7179345--7179479	35	3.9	35	76	3	110	56	9	14	19	1.66
7179333--7179504	70	2.5	70	78	5	177	56	9	13	19	1.64
7179611--7179772	35	4.7	34	80	6	173	51	6	19	22	1.69
7179607--7179748	69	2.0	70	85	6	191	51	5	19	23	1.68
7180910--7180952	22	2.0	22	86	9	61	0	30	2	67	1.03
7180926--7180972	15	3.1	15	80	14	53	4	25	0	70	1.05
7181309--7181357	10	4.8	10	79	2	53	4	16	2	77	1.01
7181361--7181393	14	2.3	15	89	5	50	6	15	15	63	1.49
7186858--7186900	22	2.0	22	85	0	59	34	4	18	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7187577--7187804	74	3.1	72	80	6	258	30	13	23	32	1.93
7187684--7187753	23	3.0	24	84	12	85	32	11	24	31	1.91
7187712--7187832	51	2.4	51	83	9	140	26	13	26	33	1.93
7193156--7193384	109	2.1	110	93	0	388	30	36	6	26	1.81
7199299--7199365	8	7.7	9	77	6	59	83	4	1	10	0.85
7199298--7199365	19	4.0	17	75	15	61	82	4	1	11	0.88
7199301--7199365	28	2.4	27	85	12	89	83	4	1	10	0.87
7199299--7199362	27	2.3	27	83	8	83	82	4	1	10	0.88
7200027--7200080	14	3.9	14	78	21	53	48	0	29	22	1.51
7200192--7200226	18	1.9	18	100	0	70	57	11	2	28	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129