genome.fa.s24.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  72  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11362607--11362639	13	2.7	13	90	9	52	87	0	0	12	0.53
11362915--11362960	23	2.0	22	83	8	56	45	23	4	26	1.71
11363788--11363821	9	3.7	9	84	7	50	79	2	8	8	1.03
11363788--11363833	19	2.4	19	88	3	65	78	4	8	8	1.09
11364706--11364994	160	1.8	159	88	0	443	33	11	15	40	1.83
11365232--11365277	3	15.3	3	95	0	83	36	0	30	32	1.58
11366144--11366184	21	2.0	21	86	13	59	4	26	0	68	1.10
11366208--11366246	11	3.7	11	83	13	55	0	12	0	87	0.55
11366212--11366246	9	3.5	10	88	11	54	0	11	0	88	0.51
11366208--11366246	20	2.0	20	94	0	69	0	12	0	87	0.55
11366281--11366320	9	4.6	9	84	15	57	2	10	0	87	0.63
11366281--11366315	16	2.2	16	100	0	70	0	11	0	88	0.51
11368947--11369000	23	2.5	21	76	8	56	50	33	1	14	1.54
11374039--11374087	24	2.0	25	88	4	73	44	2	0	53	1.12
11375868--11375893	1	26.0	1	100	0	52	100	0	0	0	0.00
11390589--11390677	44	2.0	46	91	4	146	65	8	15	10	1.47
11391295--11391339	10	4.8	10	82	17	53	73	0	8	17	1.08
11391296--11391349	18	3.0	18	75	5	56	68	0	11	20	1.19
11391295--11391335	8	4.7	9	80	14	50	75	0	7	17	1.02
11391857--11392631	50	15.7	48	76	10	541	31	10	11	46	1.74
11391857--11392654	98	8.1	98	79	6	663	31	10	11	46	1.74
11394082--11394629	274	2.0	274	96	0	999	26	14	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11395262--11395435	13	13.4	13	68	12	90	45	28	1	24	1.63
11395345--11395444	7	15.0	7	73	15	61	46	28	1	25	1.60
11395344--11395443	20	5.0	20	79	10	107	46	29	1	24	1.59
11395300--11395444	46	3.1	47	79	6	127	46	28	2	23	1.64
11395318--11395390	33	2.2	33	80	9	87	46	31	1	20	1.59
11395944--11395998	22	2.4	23	82	8	69	49	9	9	32	1.66
11395945--11395999	23	2.4	23	84	6	67	50	7	9	32	1.61
11397024--11397116	43	2.2	43	84	5	118	33	1	7	58	1.33
11397206--11397253	3	16.0	3	95	0	87	64	0	2	33	1.05
11411931--11412094	88	1.9	88	89	2	258	53	9	20	17	1.71
11412097--11412160	18	3.6	18	95	0	119	34	14	32	18	1.91
11422402--11422563	86	1.9	87	89	3	256	52	9	20	17	1.72
11422566--11422628	18	3.6	18	91	4	110	34	14	31	19	1.91
11424887--11424937	22	2.4	21	86	3	66	43	21	3	31	1.71
11424900--11424945	22	2.1	22	87	0	65	39	26	6	28	1.81
11429135--11429260	56	2.2	57	81	6	159	27	5	6	60	1.44
11430233--11430262	15	2.1	14	93	6	51	3	0	6	90	0.56
11430375--11430434	30	2.0	30	90	0	93	40	21	10	28	1.85
11430405--11430527	41	3.0	42	84	2	160	42	18	13	25	1.87
11430312--11430517	113	1.8	112	82	3	261	42	19	12	25	1.87
11430778--11430957	80	2.2	80	84	3	220	31	16	11	40	1.84
11430917--11430973	21	2.6	22	88	2	89	38	19	8	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11431306--11431349	23	1.9	23	86	9	63	27	25	4	43	1.74
11432247--11432312	9	7.8	8	82	11	62	10	7	0	81	0.86
11432208--11432312	8	12.2	9	79	10	89	11	13	0	75	1.05
11432222--11432312	17	5.2	19	77	17	76	10	10	0	78	0.98
11432222--11432323	19	5.3	19	72	17	77	10	11	0	77	1.00
11432222--11432313	10	9.4	10	72	22	63	10	10	0	78	0.97
11432673--11432717	24	1.9	23	82	13	56	6	20	0	73	1.05
11440181--11440263	36	2.2	38	82	4	98	62	0	16	20	1.32
11440761--11441526	49	15.6	49	79	8	639	31	10	10	46	1.73
11440761--11441526	99	7.8	100	79	6	667	31	10	10	46	1.73
11442984--11443528	274	2.0	274	96	0	1000	26	14	15	43	1.85
11444168--11444344	7	27.0	7	67	18	71	45	25	2	26	1.65
11444162--11444335	13	12.8	13	69	17	88	45	25	2	26	1.65
11444187--11444315	26	4.9	26	75	8	100	44	26	3	25	1.68
11444168--11444231	19	3.3	19	77	14	60	45	23	3	28	1.68
11444219--11444285	33	2.0	33	86	11	93	46	28	1	23	1.61
11444239--11444344	20	5.3	20	70	21	80	45	25	1	27	1.64
11444239--11444383	60	2.4	61	80	6	172	43	23	3	29	1.70
11444383--11444435	27	2.0	26	92	3	88	45	35	1	16	1.59
11444873--11444923	21	2.4	22	83	9	61	49	7	9	33	1.65
11447612--11447666	19	2.9	19	88	0	83	34	21	18	25	1.96
11447700--11448027	121	2.8	121	80	4	355	33	21	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11448019--11448087	28	2.5	28	83	2	77	36	21	13	28	1.91
11448807--11448862	3	18.7	3	96	0	103	66	1	0	32	1.03
11455847--11455877	16	1.9	16	93	0	53	29	0	16	54	1.42
11457672--11457711	20	2.0	20	85	9	55	57	2	2	37	1.26
11459407--11459581	90	2.0	88	87	4	253	55	8	20	16	1.66
11460522--11460567	21	2.2	21	88	7	67	47	23	0	28	1.52
11460522--11460582	22	2.8	22	82	9	72	42	24	1	31	1.64
11463631--11463660	15	2.0	15	93	0	51	46	16	0	36	1.47
11464824--11464931	50	2.2	47	79	6	117	26	10	7	55	1.59
11465962--11466195	41	5.7	41	83	1	308	44	19	12	23	1.85
11465962--11466191	82	2.8	82	90	1	354	44	20	11	23	1.84
11465932--11466195	83	3.2	83	86	2	370	42	19	13	24	1.87
11466466--11466521	21	2.7	21	97	0	103	37	10	5	46	1.62
11467843--11467970	8	15.4	8	72	16	75	8	19	0	71	1.17
11467865--11467971	25	4.3	25	73	18	71	8	18	0	72	1.09
11467843--11467969	65	2.0	65	83	9	161	8	18	0	71	1.16
11467882--11467928	10	4.5	10	79	10	58	6	14	0	78	0.93
11467903--11467971	17	4.0	16	80	17	68	8	17	0	73	1.07
11471994--11472023	16	1.9	16	93	6	53	10	10	0	80	0.92
11472013--11472120	49	2.3	46	82	7	128	25	10	6	57	1.56
11472167--11472437	130	2.1	132	95	4	485	38	14	7	40	1.73
11473835--11473909	37	2.0	37	92	0	123	56	12	12	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11489188--11489239	22	2.4	22	87	6	70	61	7	3	26	1.41
11489202--11489245	22	2.0	23	81	4	54	68	6	4	20	1.31
11489220--11489298	41	2.0	41	82	7	99	67	6	10	16	1.40
11493416--11493577	58	2.8	58	85	5	193	44	5	11	38	1.63
11493607--11493813	58	3.5	57	79	6	218	42	5	11	41	1.64
11496364--11496404	12	3.2	12	80	12	55	68	0	0	31	0.90
11496363--11496410	13	3.7	13	76	20	55	70	0	0	29	0.87
11498200--11498262	8	7.9	8	76	13	67	68	1	15	14	1.29
11498200--11498269	24	2.9	24	87	10	90	65	1	17	15	1.34
11498200--11498279	24	3.3	23	77	10	72	65	1	17	16	1.35
11499660--11499783	17	7.4	17	70	10	85	31	14	10	43	1.79
11499769--11499817	17	2.9	17	71	0	53	30	12	6	51	1.64
11499701--11499800	51	2.0	51	80	4	112	33	14	9	44	1.76
11500521--11500667	62	2.4	62	80	0	159	32	14	26	26	1.94
11501179--11501571	58	6.4	58	69	18	185	44	5	10	39	1.62
11501360--11501575	58	3.7	57	75	13	199	45	6	11	36	1.66
11506115--11506174	30	2.0	30	86	0	84	55	5	0	40	1.22
11505943--11506205	130	2.0	131	93	0	456	45	6	8	39	1.60
11509840--11509872	10	3.3	10	84	16	50	69	3	0	27	1.03
11512590--11512631	20	2.0	21	86	13	61	26	4	2	66	1.23
11515518--11516190	336	2.0	336	98	0	1301	27	22	16	33	1.95
11521490--11521542	27	2.0	26	82	10	63	67	3	3	24	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11521742--11521819	18	4.3	17	81	12	77	14	2	8	74	1.16
11521763--11521852	9	10.8	8	70	18	51	16	2	8	72	1.20
11521800--11521851	16	3.3	15	86	7	77	19	1	7	71	1.20
11521948--11521998	15	3.2	15	77	20	50	27	3	0	68	1.07
11526732--11526802	23	3.0	24	61	19	58	43	9	5	40	1.61
11535810--11536126	161	2.0	160	93	2	548	30	12	9	47	1.73
11535800--11536134	159	2.1	160	91	2	548	31	12	9	46	1.73
11536131--11536212	34	2.4	35	81	6	105	46	6	3	43	1.46
11536156--11536239	34	2.5	34	86	3	98	46	5	8	39	1.58
11537323--11537366	22	2.0	23	86	13	65	47	4	11	36	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129