genome.fa.s24.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  33  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4474180--4474232	26	2.0	26	92	0	88	30	26	18	24	1.98
4469687--4477615	878	8.9	900	83	6	8911	25	24	24	25	2.00
4477594--4481928	901	4.9	901	87	3	5757	25	24	24	25	2.00
4481938--4481987	26	1.9	26	87	0	73	26	28	20	26	1.99
4481207--4483523	800	2.9	798	92	3	3654	26	23	23	26	2.00
4482735--4482787	26	2.0	26	92	0	88	26	30	20	22	1.98
4483625--4483674	26	1.9	26	95	0	91	24	26	20	30	1.98
4484477--4484529	26	2.0	26	96	0	97	24	26	20	28	1.99
4485278--4485330	26	2.0	26	92	0	88	26	30	20	22	1.98
4488115--4488210	26	3.7	26	85	2	129	22	9	16	51	1.73
4488633--4488685	26	2.0	26	100	0	106	26	20	26	26	1.99
4490456--4490534	26	3.0	25	83	7	104	30	21	22	25	1.99
4489545--4491430	932	2.0	925	85	6	2488	25	24	24	25	2.00
4491365--4491959	185	3.2	185	87	1	784	22	26	29	21	1.99
4491748--4491798	26	2.0	26	96	0	93	27	17	25	29	1.98
4491719--4495482	895	4.2	889	82	8	4508	25	24	25	24	2.00
4495335--4495387	26	2.0	26	96	0	97	28	16	24	30	1.97
4495795--4495846	26	2.0	26	96	0	95	28	19	25	26	1.98
4495084--4496007	459	2.0	457	85	2	1237	22	28	26	22	1.99
4498337--4498384	25	1.9	25	95	0	87	27	16	29	27	1.97
4499760--4500199	217	2.0	219	88	1	659	23	35	22	18	1.96
4500176--4500226	26	2.0	26	96	0	93	27	15	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4502397--4502434	16	2.4	16	100	0	76	18	52	18	10	1.73
4505587--4505856	148	1.8	149	81	7	343	17	35	25	21	1.95
4508188--4508240	26	2.0	26	88	0	79	30	18	24	26	1.98
4509955--4510006	26	2.0	26	88	7	79	30	15	26	26	1.96
4509091--4511749	903	3.0	893	87	2	3793	24	23	24	26	2.00
4511749--4516151	892	5.0	886	82	6	5050	25	24	24	25	2.00
4514360--4514412	26	2.0	26	85	0	70	30	20	20	28	1.98
4513176--4516151	853	3.4	854	83	7	3429	25	24	24	25	2.00
4516093--4516145	26	2.0	26	92	0	88	22	20	30	26	1.98
4516888--4516940	26	2.0	26	100	0	106	26	20	26	26	1.99
4515379--4516946	795	2.0	777	86	5	2206	26	24	23	26	2.00
4517742--4517791	26	1.9	26	100	0	100	28	20	28	24	1.99
4517974--4517999	4	6.5	4	100	0	52	0	26	73	0	0.84
4519428--4519480	26	2.0	26	100	0	106	26	20	26	26	1.99
4520277--4520329	28	1.9	27	88	11	81	30	20	26	22	1.98
4519138--4520814	839	2.0	829	85	6	2245	24	24	24	25	2.00
4521145--4521194	26	1.9	26	87	0	73	26	20	28	26	1.99
4522305--4522337	11	3.0	11	100	0	66	18	36	27	18	1.94
4521552--4526051	901	5.0	901	88	2	6265	25	24	24	25	2.00
4527874--4527926	26	2.0	26	96	0	97	28	20	24	26	1.99
4528572--4528624	26	2.0	26	85	7	72	30	16	24	28	1.97
4527280--4529388	698	3.0	701	89	2	3449	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4529280--4529332	26	2.0	26	96	0	97	28	20	24	26	1.99
4530132--4530184	26	2.0	26	92	0	88	28	15	24	32	1.95
4530837--4530867	12	2.6	12	100	0	62	38	19	29	12	1.89
4531051--4531103	26	2.0	26	96	0	97	28	20	24	26	1.99
4532826--4532878	26	2.0	26	88	0	79	26	18	24	30	1.98
4529773--4534244	891	5.0	891	85	5	5657	25	23	24	25	2.00
4536870--4536922	26	2.0	26	92	0	88	28	18	24	28	1.98
4534244--4540354	894	6.8	893	86	3	8100	25	24	24	25	2.00
4539551--4539603	26	2.0	26	88	0	79	28	16	24	30	1.97
4540961--4541012	25	2.0	26	88	3	79	28	19	23	28	1.98
4541483--4541537	26	2.1	27	86	3	76	34	20	25	20	1.96
4543810--4543861	25	2.0	26	88	3	79	28	19	23	28	1.98
4546099--4546151	26	2.0	26	88	0	79	30	18	22	28	1.98
4546990--4547040	26	2.0	26	96	0	93	29	19	25	25	1.99
4549687--4549739	26	2.0	26	96	0	97	26	22	24	26	2.00
4544330--4551584	898	8.1	899	85	3	9331	25	24	24	25	2.00
4550583--4550635	26	2.0	26	92	0	88	28	22	22	26	1.99
4553087--4553139	26	2.0	26	96	0	97	26	18	26	28	1.98
4551724--4555781	890	4.6	885	85	5	5259	25	23	24	25	2.00
4554853--4554905	26	2.0	26	92	0	88	30	20	24	24	1.99
4557353--4557405	26	2.0	26	96	0	97	28	20	24	26	1.99
4555730--4559336	894	4.1	893	84	5	4596	24	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4558218--4558501	147	1.9	147	80	1	327	23	26	29	20	1.99
4559104--4559156	26	2.0	26	100	0	106	26	16	26	30	1.97
4559130--4559498	159	2.3	159	82	2	429	22	28	28	20	1.98
4560167--4560217	26	2.0	26	100	0	102	27	15	25	31	1.96
4561070--4561122	26	2.0	26	92	7	90	26	16	26	30	1.97
4561807--4561858	26	2.0	26	96	0	95	28	19	21	30	1.97
4561096--4564504	901	3.9	870	83	6	4074	26	24	23	25	2.00
4563580--4563629	26	1.9	26	91	0	82	34	16	18	32	1.92
4568497--4568549	26	2.0	26	96	0	97	28	20	24	26	1.99
4565839--4570705	891	5.5	897	85	3	6073	24	23	25	26	2.00
4569399--4569451	26	2.0	26	96	0	97	26	20	28	24	1.99
4571124--4571175	26	2.0	26	88	0	77	23	9	13	53	1.68
4572351--4572535	87	2.1	86	91	3	291	35	20	16	27	1.94
4572772--4572824	26	2.0	26	96	0	97	26	22	24	26	2.00
4573468--4573499	12	2.7	12	95	0	55	34	18	34	12	1.89
4573664--4573716	26	2.0	26	92	0	88	26	24	22	26	2.00
4574358--4574389	12	2.7	12	95	0	55	34	18	34	12	1.89
4574574--4574652	26	3.0	26	96	0	140	27	22	22	26	1.99
4577032--4577084	26	2.0	26	96	0	97	26	18	26	28	1.98
4577931--4577983	26	2.0	26	92	0	88	28	18	24	28	1.98
4574855--4582197	903	8.3	901	85	4	9210	25	23	24	25	2.00
4578836--4578886	26	2.0	26	92	0	84	27	19	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4579727--4579779	26	2.0	26	92	0	88	28	22	22	26	1.99
4580631--4580683	26	2.0	26	92	0	88	30	20	22	26	1.98
4581452--4581504	26	2.0	26	92	0	88	24	20	26	28	1.99
4581478--4582934	736	2.0	740	89	1	2228	26	21	24	27	2.00
4583996--4584047	26	2.0	26	96	0	95	28	19	26	25	1.98
4582219--4587615	904	6.0	901	85	2	6951	25	24	24	25	2.00
4585792--4585844	26	2.0	26	85	7	72	28	18	24	28	1.98
4587672--4587724	26	2.0	26	96	0	97	26	24	22	26	2.00
4587889--4587920	12	2.7	12	95	0	55	12	34	18	34	1.89
4588564--4588616	26	2.0	26	96	0	97	26	24	22	26	2.00
4588853--4589040	88	2.1	88	94	0	322	27	16	20	36	1.94
4591431--4591483	26	2.0	26	96	0	97	26	20	24	28	1.99
4589842--4593251	900	3.8	897	86	3	4545	25	23	24	25	2.00
4592332--4592387	26	2.2	26	90	0	85	30	17	21	30	1.96
4593196--4597687	895	5.1	893	84	6	5498	25	24	25	25	2.00
4597453--4597509	27	2.1	27	90	3	89	26	17	26	29	1.97
4597993--4601089	979	3.3	902	86	5	3100	25	23	24	26	2.00
4600039--4600189	79	1.9	79	93	0	257	23	18	16	41	1.90
4599141--4601759	979	2.7	978	94	0	4506	25	23	23	27	2.00
4601018--4601168	79	1.9	79	93	0	257	23	18	16	41	1.90
4601688--4601740	26	2.0	26	100	0	106	26	16	26	30	1.97
4604030--4604082	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4603388--4605825	873	2.8	869	86	4	3323	25	23	24	26	2.00
4605800--4605851	26	2.0	26	96	3	97	26	21	25	26	1.99
4605981--4606030	26	1.9	26	95	0	91	26	22	28	24	1.99
4605777--4606105	182	1.8	181	89	0	514	24	27	28	19	1.98
4606826--4606878	26	2.0	26	96	0	97	26	18	26	28	1.98
4607680--4607732	26	2.0	26	88	0	79	30	18	22	28	1.98
4605954--4608401	840	2.9	845	82	4	2496	26	22	23	26	2.00
4608573--4608625	26	2.0	26	100	0	106	26	20	26	26	1.99
4608552--4609066	173	3.0	173	85	4	680	23	27	28	19	1.98
4608919--4608971	26	2.0	26	89	7	81	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129