genome.fa.s24.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  36  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4890771--4896377	899	6.3	899	85	4	7422	24	24	25	25	2.00
4894340--4894392	26	2.0	26	96	0	97	26	18	26	28	1.98
4895234--4895286	26	2.0	26	88	0	79	26	20	24	28	1.99
4896128--4896180	26	2.0	26	92	0	88	24	18	28	28	1.98
4896541--4896593	26	2.0	26	89	7	81	24	18	30	26	1.98
4897669--4897745	26	3.0	26	96	0	136	29	19	23	27	1.98
4898583--4898635	26	2.0	26	96	0	97	26	22	24	26	2.00
4900364--4900416	26	2.0	26	92	7	90	22	16	28	32	1.96
4897695--4903366	880	6.4	899	86	3	7495	25	24	25	25	2.00
4901265--4901317	26	2.0	26	92	7	90	28	20	24	26	1.99
4903043--4903095	26	2.0	26	96	0	97	26	18	26	28	1.98
4903690--4903742	26	2.0	26	96	0	97	26	18	26	28	1.98
4902718--4904411	648	2.6	646	93	0	2836	25	26	26	21	1.99
4904340--4904390	26	2.0	26	100	0	102	27	19	27	25	1.99
4905949--4905998	26	1.9	26	91	0	82	26	18	24	32	1.97
4907061--4907113	26	2.0	26	92	0	88	26	18	26	28	1.98
4908568--4908617	25	2.0	25	96	0	91	6	28	42	24	1.78
4908693--4908745	26	2.0	26	92	0	88	28	22	22	26	1.99
4909829--4909878	26	1.9	26	83	0	64	28	6	12	54	1.60
4908858--4911043	704	3.1	707	85	5	2961	26	23	23	26	2.00
4911017--4911069	26	2.0	26	100	0	106	26	20	26	26	1.99
4912138--4912188	26	2.0	26	96	0	93	27	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4913012--4913064	26	2.0	26	96	0	97	26	20	24	28	1.99
4913918--4913970	26	2.0	26	92	0	88	26	20	24	28	1.99
4914812--4914864	26	2.0	26	92	0	88	26	18	26	28	1.98
4915713--4915765	26	2.0	26	85	7	72	28	16	28	26	1.97
4918407--4918459	26	2.0	26	96	0	97	28	20	24	26	1.99
4912063--4920204	893	9.1	895	86	3	10741	25	24	25	25	2.00
4919291--4919343	26	2.0	26	96	0	97	28	18	26	26	1.98
4920889--4920941	26	2.0	26	100	0	106	26	20	26	26	1.99
4923248--4923300	26	2.0	26	100	0	106	26	20	26	26	1.99
4923646--4923680	11	3.1	12	88	12	56	20	0	0	80	0.72
4923697--4923770	36	2.0	39	86	7	109	29	0	1	68	0.97
4923693--4923841	18	8.3	17	65	22	56	26	3	0	69	1.08
4923790--4923837	19	2.6	18	81	12	53	20	6	0	72	1.05
4924668--4924824	12	11.9	13	68	21	62	18	4	3	73	1.16
4924667--4924824	17	8.9	17	67	23	60	18	4	3	73	1.15
4924669--4924715	4	11.5	4	78	13	51	19	0	4	76	0.95
4924738--4924830	27	3.4	28	76	16	88	15	8	1	75	1.09
4924745--4924824	28	2.9	28	81	7	92	15	7	1	76	1.07
4924833--4925181	111	3.0	112	83	10	393	44	8	13	33	1.73
4929086--4929162	11	7.2	11	66	16	54	75	0	18	6	1.01
4929096--4929162	19	3.3	21	77	10	59	76	0	17	5	0.99
4929093--4929170	27	3.0	25	76	17	72	75	0	17	6	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4929117--4929173	8	6.8	8	75	16	53	78	0	15	5	0.91
4929120--4929175	19	3.2	18	85	12	80	76	0	17	5	0.96
4929122--4929162	19	2.2	19	100	0	82	80	0	14	4	0.87
4929086--4929170	45	1.9	45	86	13	124	75	0	17	7	1.02
4930485--4930621	43	3.2	41	78	9	148	37	13	15	34	1.86
4930820--4930904	41	2.0	42	93	2	145	24	18	23	32	1.97
4930879--4930932	28	1.9	28	92	0	90	22	14	33	29	1.94
4930838--4931043	69	3.0	69	94	0	349	22	16	27	33	1.95
4930948--4931001	28	1.9	28	88	0	81	22	12	33	31	1.92
4930976--4931255	42	6.7	42	93	2	449	23	18	23	34	1.96
4931259--4931289	10	3.2	10	95	4	55	93	6	0	0	0.35
4931367--4931408	1	42.0	1	85	0	57	92	7	0	0	0.37
4931367--4931408	10	4.5	10	85	14	63	92	7	0	0	0.37
4931367--4931408	18	2.4	17	92	7	75	92	7	0	0	0.37
4931259--4931625	118	3.1	117	84	8	474	49	12	12	25	1.76
4931786--4931820	6	5.8	6	90	10	54	20	0	0	80	0.72
4931788--4931822	11	3.1	12	88	12	56	20	0	0	80	0.72
4931876--4931915	18	2.4	16	91	8	62	17	0	2	80	0.83
4931880--4931936	22	2.6	22	83	5	62	24	0	1	73	0.92
4931835--4932004	55	3.1	54	77	11	150	27	3	1	67	1.16
4931921--4931993	24	2.9	25	74	17	62	26	8	0	65	1.20
4932883--4932959	6	12.8	6	70	15	52	14	6	2	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4932897--4932967	16	4.3	16	78	3	70	15	4	2	77	1.04
4932897--4932975	27	2.9	27	83	12	83	15	6	2	75	1.10
4933000--4933340	59	5.7	58	83	9	411	43	8	13	33	1.75
4932982--4933340	123	3.0	117	83	9	461	44	9	13	33	1.75
4934921--4934973	26	2.0	26	96	0	97	26	18	26	28	1.98
4936434--4936935	258	1.9	259	88	2	749	24	31	25	18	1.97
4940667--4940719	26	2.0	26	96	0	97	26	22	26	24	2.00
4939822--4946083	893	7.0	903	86	3	8030	25	24	24	25	2.00
4942462--4942515	26	2.1	26	96	0	99	29	18	24	27	1.98
4943357--4943409	26	2.0	26	100	0	106	26	20	26	26	1.99
4944247--4944299	26	2.0	26	92	0	88	26	18	26	28	1.98
4945310--4946802	719	2.1	718	88	2	2190	26	23	23	26	2.00
4946776--4946828	26	2.0	26	92	0	88	28	18	24	28	1.98
4947770--4947822	26	2.0	26	96	0	97	26	20	24	28	1.99
4948662--4948714	26	2.0	26	88	0	79	30	18	20	30	1.97
4949564--4949616	26	2.0	26	85	0	70	30	22	22	24	1.99
4947350--4953178	892	6.5	902	84	4	7246	25	24	24	25	2.00
4951377--4951429	26	2.0	26	88	0	79	26	18	24	30	1.98
4954734--4954789	26	2.2	26	100	0	112	26	19	25	28	1.99
4955633--4955685	26	2.0	26	92	0	88	26	16	26	30	1.97
4953145--4957657	899	5.1	901	87	3	5996	25	24	24	25	2.00
4956535--4956588	26	2.0	27	89	3	83	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4957104--4958208	556	2.0	555	85	3	1508	25	27	24	21	1.99
4957656--4960432	884	3.1	893	84	5	3674	25	23	24	25	2.00
4961255--4961305	26	2.0	26	92	0	84	29	13	25	31	1.94
4962148--4962200	26	2.0	26	92	0	88	24	22	28	24	2.00
4960444--4971562	900	12.3	893	80	6	11412	25	24	25	25	2.00
4963929--4963981	26	2.0	26	92	0	88	28	20	22	28	1.99
4964834--4964885	26	2.0	25	92	3	86	26	19	25	28	1.98
4966634--4966684	26	2.0	26	92	0	84	25	17	27	29	1.98
4967047--4967099	26	2.0	26	85	0	70	28	18	24	28	1.98
4968502--4968554	26	2.0	26	88	0	79	26	22	24	26	2.00
4967626--4971562	883	4.4	883	85	3	5130	25	24	25	25	2.00
4970278--4970330	26	2.0	26	92	0	88	24	18	26	30	1.98
4971168--4971220	26	2.0	26	96	0	97	28	20	24	26	1.99
4971299--4971857	295	1.9	295	87	1	825	22	25	27	24	2.00
4972365--4972416	25	2.0	26	88	3	79	25	19	25	30	1.98
4973910--4973962	26	2.0	26	92	0	88	26	20	24	28	1.99
4974802--4974854	26	2.0	26	92	0	88	26	16	26	30	1.97
4973332--4977214	903	4.4	896	83	6	4517	25	23	24	26	2.00
4975691--4975742	26	2.0	26	92	3	88	26	21	23	28	1.99
4976590--4976642	26	2.0	26	92	7	90	26	16	26	30	1.97
4979049--4980793	901	1.9	892	86	3	2473	25	24	24	25	2.00
4981106--4981158	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4982866--4982918	26	2.0	26	92	0	88	28	24	20	26	1.99
4983069--4983119	24	2.1	24	96	0	93	21	11	37	29	1.89
4983783--4983835	26	2.0	26	92	0	88	26	22	22	28	1.99
4984686--4984738	26	2.0	26	92	0	88	28	24	18	28	1.98
4981991--4985478	903	3.9	903	87	4	4927	25	24	24	24	2.00
4986304--4986358	26	2.1	26	96	0	101	25	27	20	27	1.99
4987050--4991276	900	4.7	885	84	5	5097	26	24	23	25	2.00
4990622--4990691	26	2.7	26	95	2	124	31	25	14	28	1.95
4992721--4992773	4	13.5	4	80	4	63	3	69	22	3	1.20
4994755--4994807	26	2.0	26	88	0	79	30	28	16	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129