genome.fa.s24.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  118  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19873447--19873507	24	2.5	24	81	5	70	60	3	3	32	1.29
19874327--19874356	12	2.5	12	94	0	51	0	3	26	70	1.03
19874368--19874412	5	9.0	5	90	0	72	77	0	20	2	0.87
19881800--19881863	31	2.1	31	88	5	94	25	17	26	31	1.97
19883298--19883341	22	2.0	22	82	4	54	2	34	4	59	1.30
19884944--19884969	12	2.2	12	100	0	52	30	0	7	61	1.24
19889413--19889444	15	2.1	15	94	0	55	6	0	12	81	0.87
19892329--19892367	20	2.0	20	85	10	53	25	2	7	64	1.33
19906130--19906162	16	2.1	16	94	0	57	39	6	9	45	1.61
19907034--19907071	20	1.9	20	94	0	67	47	26	0	26	1.52
19907061--19907105	22	2.0	23	82	4	56	55	22	2	20	1.54
19909669--19909844	60	3.0	59	83	5	239	38	11	3	45	1.60
19909746--19909942	98	2.0	98	88	5	290	34	13	5	47	1.64
19909841--19910007	59	2.9	57	82	12	189	38	10	5	46	1.61
19910540--19910580	20	2.0	20	85	0	55	63	19	0	17	1.31
19911388--19912140	86	8.8	86	74	10	440	46	13	17	22	1.82
19911836--19911904	31	2.2	31	81	2	84	52	14	10	23	1.72
19911396--19912140	171	4.4	170	76	6	526	46	13	17	22	1.82
19912966--19913114	49	3.0	50	86	5	214	18	17	11	52	1.74
19923422--19923677	59	4.3	59	82	6	311	35	9	6	48	1.62
19923424--19923678	119	2.2	120	88	2	372	35	9	6	48	1.62
19925208--19925292	31	2.7	31	88	0	125	29	11	8	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19926975--19927029	27	2.0	27	92	0	92	50	20	7	21	1.71
19938832--19938894	3	21.0	3	72	18	51	63	1	1	33	1.13
19938836--19938921	14	5.9	14	70	17	50	63	3	2	30	1.23
19938831--19938894	24	2.7	23	83	7	67	64	1	1	32	1.13
19953125--19953174	7	6.9	7	78	17	57	22	0	0	78	0.76
19953125--19953175	4	13.8	4	77	22	58	21	0	0	78	0.75
19953122--19953186	30	2.2	30	88	2	96	18	1	0	80	0.80
19953125--19953177	14	3.6	14	85	14	72	20	0	0	79	0.74
19953129--19953187	26	2.3	26	85	8	77	16	1	0	81	0.78
19953124--19953176	20	2.8	20	81	13	69	20	0	0	79	0.74
19954063--19954103	21	2.0	21	85	0	55	31	0	0	68	0.90
19957391--19957424	17	2.0	17	94	0	59	29	8	35	26	1.87
19960720--19960900	82	2.2	82	87	1	263	28	11	18	40	1.86
19960909--19961105	42	4.7	42	80	0	169	24	11	21	42	1.86
19961206--19961338	48	2.7	49	86	4	162	30	15	15	39	1.88
19961477--19961537	14	4.2	15	72	14	56	8	11	0	80	0.91
19961469--19961544	38	2.0	39	82	12	95	9	11	0	78	0.95
19962408--19962448	21	2.0	21	90	0	64	34	0	2	63	1.08
19964430--19964486	30	1.9	30	88	0	87	35	8	0	56	1.31
19965156--19965180	12	2.1	12	100	0	50	36	16	24	24	1.94
19967135--19967178	18	2.4	18	84	3	52	31	4	2	61	1.28
19968814--19968992	98	1.8	96	83	4	234	38	20	13	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19968814--19969000	47	3.9	48	76	6	180	38	19	13	28	1.89
19969037--19969161	49	2.5	49	84	1	142	42	20	11	26	1.85
19969085--19969181	49	2.0	49	89	4	151	39	22	10	27	1.87
19969929--19969966	19	2.0	19	89	0	58	5	10	0	84	0.77
19982490--19982531	10	4.4	10	79	8	52	33	0	0	66	0.92
19982511--19982545	14	2.5	15	90	9	56	28	0	0	71	0.86
19982496--19982546	19	2.5	20	81	15	61	31	0	0	68	0.90
19982835--19982880	24	2.0	24	83	8	60	41	0	0	58	0.98
19985141--19985186	23	1.9	25	86	8	69	47	4	0	47	1.21
19986387--19986416	12	2.6	11	90	10	51	70	0	3	26	1.03
19986819--19986979	83	1.9	83	85	0	223	42	21	16	19	1.89
19987316--19987350	18	1.9	18	88	0	52	57	0	0	42	0.99
19987396--19987468	29	2.5	29	86	0	92	60	1	4	34	1.24
19987446--19987484	19	2.2	17	86	9	51	66	7	0	25	1.18
19987455--19987522	18	3.6	19	74	7	59	58	7	0	33	1.26
19987588--19987639	25	2.1	25	85	3	70	48	3	0	48	1.20
19987622--19987673	19	2.7	19	85	11	63	53	5	1	38	1.36
19989016--19989044	14	2.0	15	93	6	51	34	0	17	48	1.47
19995402--19995492	14	6.9	13	74	19	73	50	1	0	48	1.08
19995402--19995492	29	3.4	28	79	16	86	50	1	0	48	1.08
19998525--19998563	17	2.3	17	86	8	53	35	0	2	61	1.10
20003926--20003986	22	2.9	21	81	13	72	47	6	0	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20003945--20003992	22	2.5	17	72	27	51	39	6	0	54	1.26
20011117--20011144	2	14.0	2	100	0	56	50	0	0	50	1.00
20022027--20022075	20	2.5	20	80	6	55	57	0	0	42	0.99
20028191--20028220	10	3.1	10	95	4	53	63	0	0	36	0.95
20029116--20029167	12	4.3	12	81	18	72	32	0	0	67	0.91
20029099--20029167	36	1.9	35	88	2	102	31	0	0	68	0.90
20029098--20029170	30	2.5	30	78	14	80	32	0	0	67	0.91
20029161--20029211	21	2.7	18	81	18	68	50	0	0	49	1.00
20029164--20029208	21	2.2	21	92	7	76	48	0	0	51	1.00
20029592--20029657	12	5.3	12	74	15	55	34	0	0	65	0.93
20029618--20029651	10	3.5	10	92	8	61	35	0	0	64	0.94
20029661--20029710	21	2.6	17	77	19	55	48	0	2	50	1.12
20029667--20029707	21	2.0	20	90	9	66	51	0	0	48	1.00
20030948--20030982	18	1.9	18	88	0	52	68	0	2	28	1.04
20030956--20031005	13	3.6	13	79	12	55	62	2	0	36	1.07
20030964--20031007	13	3.0	15	80	16	56	56	4	0	38	1.20
20031290--20031331	21	2.0	21	81	9	50	47	0	0	52	1.00
20039289--20039319	2	15.5	2	100	0	62	51	0	0	48	1.00
20042882--20042927	23	2.0	23	100	0	92	21	13	17	47	1.81
20053856--20053903	19	2.5	20	86	3	71	20	0	10	68	1.18
20053928--20053960	14	2.4	14	90	10	50	69	0	3	27	1.03
20053930--20054216	60	4.8	59	82	3	335	46	4	9	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20053942--20054219	118	2.4	117	88	1	412	44	4	9	40	1.58
20054200--20054250	23	2.2	23	82	6	59	39	3	9	47	1.55
20055217--20055392	93	1.9	93	85	0	244	23	17	10	49	1.76
20055390--20055543	60	2.6	58	87	2	209	43	5	11	40	1.62
20057510--20057694	93	2.0	95	92	4	313	48	14	8	29	1.72
20059114--20059180	30	2.2	30	84	5	82	44	2	5	46	1.43
20062064--20062110	2	23.5	2	100	0	94	51	0	0	48	1.00
20069063--20069087	5	5.0	5	100	0	50	80	0	0	20	0.72
20074635--20074675	21	2.0	20	85	4	55	24	24	12	39	1.89
20075126--20075294	62	2.7	63	84	6	245	50	7	9	33	1.62
20075986--20076010	12	2.1	12	100	0	50	16	8	8	68	1.38
20078785--20078809	12	2.1	12	100	0	50	92	8	0	0	0.40
20079467--20079532	8	8.5	8	76	21	61	78	0	15	6	0.93
20079465--20079494	13	2.3	13	94	0	51	90	0	6	3	0.56
20079505--20079542	16	2.3	17	90	4	60	71	0	21	7	1.11
20080128--20080227	49	2.0	49	92	0	164	32	10	25	33	1.89
20080243--20080286	23	1.9	23	90	0	70	40	4	27	27	1.75
20080648--20080719	21	3.4	21	90	0	108	43	12	8	36	1.73
20080892--20080950	31	1.9	31	82	6	75	40	10	16	32	1.82
20081139--20081382	42	5.8	43	86	4	293	22	12	21	43	1.86
20081139--20081397	85	3.0	86	83	5	312	22	13	20	44	1.86
20082383--20082423	14	2.8	14	85	10	55	75	4	0	19	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20082401--20082425	13	1.9	13	100	0	50	80	0	0	20	0.72
20082385--20082577	60	3.2	60	82	5	228	55	6	7	30	1.53
20085776--20085801	13	2.0	13	100	0	52	76	0	0	23	0.78
20090928--20090960	18	1.9	17	88	11	50	48	0	0	51	1.00
20090996--20091042	25	1.9	25	82	4	60	65	0	4	29	1.11
20091580--20091631	18	2.9	17	83	13	52	26	3	0	69	1.06
20092200--20092247	24	2.1	24	85	14	66	50	2	0	47	1.12
20092256--20092305	5	10.0	5	85	14	68	38	0	0	62	0.96
20092256--20092305	11	4.5	11	88	11	75	38	0	0	62	0.96
20092262--20092299	13	3.1	13	92	7	62	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129