genome.fa.s24.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  84  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13519058--13519122	30	2.2	30	86	5	87	58	0	3	38	1.14
13519350--13519450	3	34.7	3	84	5	118	31	1	3	62	1.25
13519699--13519757	23	2.5	24	83	5	77	35	1	25	37	1.66
13519699--13519764	23	3.0	21	72	12	60	37	1	27	33	1.66
13519819--13519866	20	2.3	21	85	7	71	25	2	22	50	1.60
13522811--13523717	451	2.0	451	93	0	1566	41	12	20	24	1.87
13526675--13526852	92	2.0	90	86	2	248	26	17	19	35	1.94
13531874--13531932	15	3.8	16	73	13	52	61	0	0	38	0.96
13531874--13531932	23	2.6	23	74	15	59	61	0	0	38	0.96
13532587--13533023	131	3.4	129	79	3	432	43	6	10	40	1.64
13533155--13533208	28	1.9	28	100	0	108	29	22	11	37	1.89
13533332--13533360	9	3.3	9	90	9	51	82	0	6	10	0.83
13533425--13533508	30	2.8	30	81	1	89	19	42	8	29	1.80
13535384--13535419	18	2.0	19	89	10	58	41	0	0	58	0.98
13536146--13536171	5	5.2	5	100	0	52	80	19	0	0	0.71
13542382--13542419	14	2.7	14	80	12	51	10	23	2	63	1.39
13546775--13546891	49	2.4	49	92	0	189	29	10	22	37	1.87
13546867--13546915	24	2.0	24	100	0	98	36	4	12	46	1.60
13546817--13546966	73	2.1	73	93	0	255	30	10	18	40	1.84
13546775--13547009	122	1.9	121	86	4	330	31	11	20	37	1.88
13546891--13547167	48	5.7	49	83	5	314	30	12	19	37	1.89
13547399--13547441	22	2.0	22	85	0	59	23	18	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13547548--13547581	11	3.2	10	84	15	50	85	14	0	0	0.60
13547651--13547726	40	1.9	40	83	5	100	17	42	10	30	1.82
13547689--13547745	30	1.9	30	92	0	96	21	42	10	26	1.85
13547692--13547761	30	2.3	30	85	0	86	18	41	8	31	1.81
13548536--13548593	31	1.9	31	82	3	73	27	1	3	67	1.17
13548622--13548680	26	2.3	27	79	8	68	38	0	3	57	1.15
13550843--13550880	19	2.0	19	100	0	76	42	31	10	15	1.81
13553545--13553569	10	2.5	10	100	0	50	92	0	8	0	0.40
13557140--13557181	21	2.0	21	85	4	57	42	0	2	54	1.13
13563603--13563678	25	3.0	25	76	7	73	68	6	0	25	1.13
13563636--13563683	21	2.2	22	85	7	62	70	8	2	18	1.22
13563674--13563708	12	2.9	12	91	0	52	85	0	11	2	0.69
13564470--13564535	3	22.7	3	85	11	84	66	1	0	31	1.01
13572489--13572547	25	2.5	24	78	15	61	49	3	6	40	1.46
13572843--13572872	2	15.0	2	100	0	60	50	0	50	0	1.00
13574453--13574490	13	2.8	13	92	4	58	73	5	0	21	1.02
13574686--13574710	13	1.9	13	100	0	50	40	0	0	60	0.97
13575536--13575575	11	3.3	13	76	16	50	7	0	7	85	0.76
13575537--13575580	22	2.0	22	82	4	54	11	0	9	79	0.93
13575956--13575993	13	3.0	13	80	3	51	73	0	5	21	1.02
13576118--13576188	9	7.4	9	76	10	52	59	5	1	33	1.30
13577302--13577492	101	1.9	101	83	2	249	36	9	8	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13578630--13578683	17	3.1	17	78	2	54	40	11	14	33	1.82
13578726--13578910	87	2.1	87	86	4	264	40	15	11	32	1.83
13578800--13578879	35	2.3	34	79	10	90	42	17	11	28	1.84
13578815--13578896	17	4.7	18	77	8	82	39	15	13	31	1.87
13578815--13578896	35	2.4	34	85	6	103	39	15	13	31	1.87
13578926--13579004	35	2.3	35	84	4	97	41	13	12	31	1.82
13579194--13579457	135	1.9	136	81	3	318	45	13	6	34	1.69
13579308--13579609	91	3.3	87	71	12	225	39	15	7	37	1.75
13579398--13579473	24	3.2	24	77	7	93	46	14	6	32	1.70
13579398--13579500	24	4.5	23	72	7	84	43	14	8	33	1.76
13579170--13579606	46	9.7	46	72	9	211	42	15	7	35	1.74
13579398--13579486	24	3.8	24	74	5	92	43	14	7	33	1.74
13580835--13580873	18	2.2	17	83	16	53	7	17	0	74	1.05
13580838--13580872	18	1.9	18	88	11	54	8	20	0	71	1.11
13581769--13581806	17	2.2	17	86	9	51	76	7	2	13	1.11
13582051--13582166	42	2.8	41	83	10	144	43	16	14	25	1.85
13582141--13582194	23	2.3	23	93	3	90	55	11	16	16	1.68
13582105--13582235	64	2.0	66	94	2	230	46	10	15	27	1.78
13582164--13582321	41	3.8	42	87	0	212	47	11	13	27	1.77
13582660--13582726	21	3.1	21	80	6	73	37	13	13	35	1.84
13584282--13584328	19	2.5	19	80	10	51	8	17	6	68	1.37
13586765--13586815	23	2.3	23	90	10	79	47	3	21	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13588110--13588135	7	3.7	7	100	0	52	11	0	0	88	0.52
13589250--13589291	22	2.0	22	90	4	68	80	9	0	9	0.89
13590128--13590159	17	1.9	16	93	6	55	3	9	0	87	0.64
13590445--13590478	11	2.9	11	91	8	50	5	14	0	79	0.91
13590456--13590510	19	3.1	18	77	12	51	9	12	0	78	0.97
13599554--13599596	7	5.7	7	84	15	59	72	0	13	13	1.13
13599553--13599597	8	5.8	8	80	15	58	73	0	13	13	1.10
13600300--13600374	9	7.7	9	75	16	69	25	14	14	45	1.83
13600296--13600387	20	4.6	20	100	0	184	25	15	14	45	1.83
13601221--13601278	17	3.6	17	72	13	59	34	12	15	37	1.85
13601194--13601281	31	2.8	32	81	5	90	37	12	14	35	1.84
13601402--13601436	18	1.9	18	94	0	61	34	5	17	42	1.73
13602018--13602067	26	1.9	26	95	0	91	52	16	18	14	1.76
13605044--13605236	101	1.9	100	82	3	244	39	9	7	43	1.66
13605419--13605455	17	2.2	17	90	4	58	70	0	2	27	1.01
13611184--13611295	59	1.9	59	92	0	188	40	17	12	29	1.87
13618758--13618796	15	2.7	15	88	4	53	58	7	5	28	1.47
13618819--13618847	2	14.5	2	100	0	58	48	0	0	51	1.00
13619317--13619373	26	2.2	25	78	9	60	33	0	8	57	1.29
13621443--13621473	3	10.3	3	100	0	62	0	0	35	64	0.94
13627780--13627835	16	3.6	15	79	9	67	71	1	19	7	1.18
13628884--13629099	118	1.8	118	85	0	306	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13629269--13629323	23	2.5	22	81	3	65	38	25	20	16	1.92
13629639--13629903	35	7.6	35	69	7	117	20	20	10	47	1.80
13629668--13629870	70	2.9	70	73	5	187	20	20	11	47	1.80
13629638--13629903	70	3.8	70	73	4	176	20	20	11	47	1.80
13629708--13629931	35	6.4	35	71	8	150	21	20	10	46	1.81
13630028--13630099	35	2.1	35	86	5	101	22	23	11	43	1.85
13630293--13630330	15	2.6	14	84	8	58	84	0	0	15	0.63
13630468--13630497	15	1.9	16	93	6	53	66	0	0	33	0.92
13631166--13631219	22	2.5	22	84	0	63	70	3	3	22	1.19
13632288--13632321	16	2.1	16	88	0	50	38	2	2	55	1.30
13632362--13632390	3	9.7	3	100	0	58	65	0	0	34	0.93
13632455--13632512	29	2.0	29	93	6	100	72	6	0	20	1.07
13632450--13632498	13	3.3	15	77	13	57	71	8	2	18	1.21
13632493--13632549	14	4.2	13	72	16	53	70	0	3	26	1.03
13632901--13632961	16	3.7	16	78	6	59	52	27	0	19	1.46
13632875--13632993	31	3.8	31	74	11	89	50	25	0	24	1.50
13632875--13632994	15	7.6	16	71	16	63	50	25	0	24	1.50
13632965--13633051	17	5.4	17	71	15	67	47	27	0	25	1.53
13633107--13633136	14	2.1	14	93	0	51	56	20	0	23	1.42
13633408--13633446	3	13.0	3	100	0	78	66	0	0	33	0.92
13637076--13637104	2	14.5	2	100	0	58	51	0	0	48	1.00
13637138--13637170	17	1.9	17	100	0	66	57	0	6	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13638293--13638319	13	2.1	13	100	0	54	44	0	0	55	0.99
13638313--13638339	13	2.1	13	100	0	54	51	0	7	40	1.30
13639131--13639465	157	2.1	157	80	4	372	26	25	14	33	1.95
13639174--13639536	157	2.3	155	79	5	363	26	25	15	33	1.95
13643866--13643918	26	2.0	26	85	7	72	60	7	0	32	1.25
13644108--13644230	45	2.7	46	78	12	114	26	3	4	65	1.25
13650700--13650749	3	16.7	3	83	8	66	38	2	28	32	1.68
13650838--13650866	3	9.7	3	100	0	58	65	0	0	34	0.93
13652127--13652179	18	2.7	20	85	11	65	67	3	1	26	1.17
13652457--13652512	14	3.9	14	79	9	58	50	35	1	12	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129