genome.fa.s24.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  34  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611272--4611324	26	2.0	26	100	0	106	26	20	26	26	1.99
4609740--4612097	892	2.6	903	89	3	3505	25	23	24	26	2.00
4614495--4614547	26	2.0	26	88	0	79	28	18	22	30	1.98
4615388--4615440	26	2.0	26	92	0	88	28	18	26	26	1.98
4613158--4617188	895	4.5	889	83	6	4842	25	24	24	25	2.00
4617871--4617923	26	2.0	26	88	0	79	24	20	26	28	1.99
4617167--4619562	890	2.7	883	86	3	3272	25	23	24	25	2.00
4622676--4622728	26	2.0	26	92	7	90	22	20	26	30	1.98
4622584--4627175	899	5.1	899	86	4	6175	25	24	24	25	2.00
4626248--4626300	26	2.0	26	96	0	97	26	18	26	28	1.98
4627122--4627516	159	2.5	159	80	4	431	23	30	26	20	1.98
4629163--4629215	26	2.0	26	92	7	90	28	20	22	28	1.99
4630065--4630117	26	2.0	26	92	0	88	26	16	26	30	1.97
4628756--4631187	907	2.7	897	87	3	3377	25	24	25	24	2.00
4630972--4631024	26	2.0	26	92	0	88	28	15	24	32	1.95
4631821--4631873	26	2.0	26	92	0	88	28	15	24	32	1.95
4630355--4635987	849	6.4	850	75	12	4385	25	23	24	26	2.00
4632714--4632768	28	2.0	26	93	6	92	25	21	25	27	2.00
4633590--4633642	26	2.0	26	96	0	97	26	18	28	26	1.98
4634491--4634543	26	2.0	26	85	7	72	30	18	20	30	1.97
4633500--4635987	885	2.8	887	83	5	2875	25	23	24	26	2.00
4636932--4636984	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4636958--4637228	148	1.8	148	87	1	409	20	26	31	21	1.98
4637974--4638026	26	2.0	26	96	0	97	28	20	24	26	1.99
4638853--4638905	26	2.0	26	96	0	97	26	22	24	26	2.00
4639761--4639813	26	2.0	26	96	0	97	26	20	24	28	1.99
4640662--4640714	26	2.0	26	96	0	97	28	20	24	26	1.99
4640837--4642992	708	3.0	704	89	3	3275	25	23	24	26	2.00
4642972--4643024	26	2.0	26	96	0	97	30	20	20	28	1.98
4644720--4644772	26	2.0	26	89	7	81	26	18	26	28	1.98
4645606--4645658	26	2.0	26	88	0	79	26	18	24	30	1.98
4646489--4646541	26	2.0	26	96	0	97	28	20	24	26	1.99
4647361--4647413	26	2.0	26	92	0	88	30	20	22	26	1.98
4647510--4647568	26	2.3	26	93	0	100	10	42	23	23	1.85
4648259--4648311	26	2.0	26	100	0	106	30	20	22	26	1.98
4642246--4649942	872	8.7	873	86	4	9641	25	24	24	25	2.00
4649131--4649183	26	2.0	26	92	0	88	26	20	26	26	1.99
4650037--4650086	26	1.9	26	100	0	100	28	20	28	24	1.99
4649316--4650837	746	2.0	744	88	1	2237	25	22	24	26	2.00
4650780--4650832	26	2.0	26	92	0	88	26	24	22	26	2.00
4651678--4651730	26	2.0	26	92	0	88	28	18	24	28	1.98
4650060--4652790	910	3.0	889	87	3	3792	25	24	25	25	2.00
4656173--4656225	26	2.0	26	88	0	79	24	20	28	26	1.99
4657066--4657118	26	2.0	26	92	0	88	28	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4657786--4657838	26	2.0	26	92	0	88	28	22	24	24	2.00
4659468--4659517	26	1.9	26	88	8	75	30	16	26	28	1.96
4662057--4662114	26	2.2	27	90	3	91	24	18	25	31	1.98
4664739--4664790	25	2.0	26	96	3	97	26	21	25	26	1.99
4665630--4665689	26	2.4	26	88	5	88	25	16	28	30	1.97
4670449--4670498	26	1.9	26	91	0	82	28	18	28	26	1.98
4672190--4672242	26	2.0	26	92	0	88	30	20	22	26	1.98
4670177--4673990	867	4.4	867	82	8	4514	25	24	24	25	2.00
4674649--4674701	26	2.0	26	85	0	70	26	20	26	26	1.99
4676400--4676451	26	2.0	26	100	0	104	26	19	26	26	1.99
4674002--4677102	868	3.6	863	81	8	3652	26	22	24	27	2.00
4677152--4677204	26	2.0	26	96	0	97	26	16	24	32	1.97
4678911--4678963	26	2.0	26	89	7	81	28	16	24	30	1.97
4679816--4679866	26	2.0	26	88	0	75	27	9	25	37	1.87
4681608--4681660	26	2.0	26	100	0	106	26	20	26	26	1.99
4677107--4695921	902	21.1	902	85	3	23999	25	24	24	25	2.00
4682513--4682565	26	2.0	26	88	0	79	30	26	20	22	1.98
4683406--4683458	26	2.0	26	89	7	81	28	16	26	28	1.97
4684308--4684357	26	1.9	26	95	0	91	26	20	26	28	1.99
4686264--4686316	26	2.0	26	100	0	106	26	20	26	26	1.99
4686980--4687031	26	2.0	26	96	0	95	26	19	25	28	1.98
4687877--4687926	26	1.9	26	87	0	73	28	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4688759--4688810	26	2.0	26	88	0	77	26	17	25	30	1.97
4690535--4690587	26	2.0	26	96	0	97	24	20	28	26	1.99
4692339--4692391	26	2.0	26	85	0	70	26	20	22	30	1.98
4694145--4694197	26	2.0	26	88	0	79	24	18	26	30	1.98
4699753--4699802	26	1.9	26	95	0	91	28	18	28	26	1.98
4700076--4704126	901	4.5	895	86	2	5447	25	24	24	25	2.00
4702275--4702327	26	2.0	26	92	0	88	30	15	24	30	1.95
4703171--4703223	26	2.0	26	100	0	106	26	16	26	30	1.97
4704075--4704126	25	2.0	26	92	3	88	26	19	25	28	1.98
4703884--4704343	242	1.9	244	85	2	640	22	33	25	18	1.97
4705182--4705235	26	2.1	26	92	0	90	29	20	22	27	1.98
4706067--4706119	26	2.0	26	96	0	97	28	20	24	26	1.99
4706959--4707011	26	2.0	26	96	0	97	28	20	24	26	1.99
4704317--4708923	887	5.2	886	86	4	5855	25	23	24	26	2.00
4708702--4708754	26	2.0	26	92	0	88	26	18	24	30	1.98
4710827--4710879	26	2.0	26	92	0	88	26	20	26	26	1.99
4714792--4716627	901	2.0	898	89	2	2815	24	25	25	24	2.00
4715876--4717340	713	2.0	715	90	2	2345	26	23	24	25	2.00
4717314--4717366	26	2.0	26	96	0	97	26	18	26	28	1.98
4716594--4723358	896	7.6	887	85	5	8311	25	23	24	25	2.00
4719088--4719140	26	2.0	26	85	7	72	26	16	26	30	1.97
4723178--4723535	177	2.0	178	90	4	564	30	19	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4723692--4723744	26	2.0	26	85	7	72	30	22	18	28	1.98
4724251--4724771	177	2.9	177	95	1	920	30	19	23	26	1.98
4724615--4725298	345	2.0	346	89	2	1052	25	27	25	22	2.00
4725287--4725337	26	2.0	26	100	0	102	29	23	19	27	1.98
4726187--4726238	25	2.0	26	92	3	88	28	21	23	26	1.99
4724961--4730610	901	6.3	895	86	4	7402	25	24	24	25	2.00
4728856--4728906	26	2.0	26	96	0	93	29	19	23	27	1.98
4732872--4732924	26	2.0	26	96	0	97	26	18	26	28	1.98
4731537--4735382	911	4.3	897	87	3	5350	25	24	24	25	2.00
4733783--4733835	26	2.0	26	92	0	88	30	20	20	28	1.98
4734665--4734715	26	2.0	26	92	0	84	31	19	23	25	1.98
4731537--4735382	912	4.3	887	86	4	5218	25	24	24	25	2.00
4736634--4736988	176	2.0	176	92	2	597	30	19	23	26	1.98
4737144--4737196	26	2.0	26	85	7	72	30	22	18	28	1.98
4737717--4738240	182	2.9	176	87	8	735	30	19	23	27	1.98
4739642--4739693	25	2.0	26	92	3	88	28	21	23	26	1.99
4738418--4744936	874	7.3	882	84	6	7518	25	24	24	25	2.00
4743182--4743232	26	2.0	26	96	0	93	29	19	23	27	1.98
4747199--4747251	26	2.0	26	92	0	88	26	16	26	30	1.97
4748115--4748167	26	2.0	26	88	0	79	30	18	20	30	1.97
4749005--4749055	26	2.0	26	92	0	84	31	19	23	25	1.98
4749903--4749955	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4750810--4750862	26	2.0	26	85	0	70	30	16	24	28	1.97
4745862--4764833	900	21.3	902	83	6	22080	25	24	24	25	2.00
4751683--4751735	26	2.0	26	92	0	88	30	16	24	28	1.97
4752602--4752657	29	2.0	26	83	10	67	30	19	23	26	1.98
4755318--4755372	26	2.1	26	93	0	92	27	14	25	32	1.95
4756209--4756261	26	2.0	26	92	0	88	28	20	22	28	1.99
4758009--4758061	26	2.0	26	92	0	88	28	22	22	26	1.99
4760640--4760692	26	2.0	26	92	0	88	28	18	24	28	1.98
4759772--4764833	892	5.7	886	81	9	5614	25	24	24	25	2.00
4761520--4761580	26	2.4	26	89	5	90	26	16	27	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129