genome.fa.s24.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  89  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14291647--14291675	2	15.0	2	92	7	51	48	0	0	51	1.00
14292240--14292302	27	2.4	26	82	12	67	36	9	0	53	1.33
14295378--14295436	11	5.3	11	77	15	50	50	0	1	47	1.11
14295541--14295568	10	2.8	10	100	0	56	50	0	0	50	1.00
14299997--14300047	23	2.3	22	86	3	66	41	0	1	56	1.10
14300128--14300161	2	17.0	2	100	0	68	50	0	0	50	1.00
14301505--14301548	10	4.3	10	80	13	54	22	0	9	68	1.18
14301529--14301577	15	3.3	15	85	5	73	24	0	10	65	1.23
14302267--14302313	21	2.2	21	96	0	85	27	0	14	57	1.38
14307521--14307556	16	2.2	16	90	0	54	50	2	0	47	1.15
14307998--14308078	37	2.2	38	86	4	112	46	2	6	44	1.41
14308410--14308472	21	3.0	21	93	4	108	31	9	0	58	1.30
14309110--14309180	35	2.0	37	83	10	94	42	9	2	45	1.52
14324290--14324329	17	2.3	18	95	4	73	27	0	5	67	1.11
14327620--14327671	21	2.4	23	81	15	67	57	0	0	42	0.98
14331008--14331084	31	2.5	31	76	2	82	53	6	3	36	1.45
14335528--14335593	33	2.0	33	87	0	96	50	12	18	19	1.78
14336880--14336977	49	2.0	49	97	0	187	28	13	14	43	1.83
14338147--14338257	46	2.4	46	93	0	186	30	20	9	38	1.85
14338276--14338417	76	1.9	76	90	0	230	45	11	14	27	1.80
14343391--14343448	29	2.0	29	86	6	82	67	0	0	32	0.91
14343397--14343440	19	2.4	18	77	7	54	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14355349--14355410	31	2.0	32	83	3	81	41	4	4	48	1.46
14355452--14355501	13	3.8	13	76	10	57	34	0	2	64	1.05
14355453--14355505	26	2.0	26	92	0	88	35	0	1	62	1.06
14357160--14357233	32	2.3	32	88	4	105	48	2	0	48	1.15
14358091--14358147	29	1.9	28	86	10	78	43	1	0	54	1.10
14359246--14359295	25	2.0	26	84	4	66	52	0	0	48	1.00
14359267--14359309	16	2.8	16	76	16	54	58	0	0	41	0.98
14369656--14369708	24	2.2	24	83	6	63	47	1	1	49	1.23
14377243--14377281	15	2.6	15	87	0	60	56	2	0	41	1.13
14377368--14377408	16	2.7	15	88	7	64	48	0	0	51	1.00
14377331--14377433	36	2.6	37	79	14	93	45	1	0	52	1.12
14377371--14377444	9	8.6	9	73	19	68	48	0	0	51	1.00
14377371--14377443	25	2.9	26	91	4	114	49	0	0	50	1.00
14377368--14377433	15	4.5	16	73	24	65	48	0	0	51	1.00
14377497--14377553	28	2.0	28	100	0	114	40	7	0	52	1.28
14384285--14384311	7	3.9	7	100	0	54	29	0	0	70	0.88
14389661--14389705	22	2.0	23	87	12	67	26	0	28	44	1.55
14389742--14389843	34	3.0	33	81	7	116	35	14	11	38	1.83
14389754--14389843	34	2.7	34	87	1	128	35	15	12	36	1.85
14397476--14397514	19	2.1	19	85	0	51	33	0	2	64	1.08
14398725--14398775	18	2.8	18	94	5	86	50	0	0	49	1.00
14400780--14400880	51	2.0	51	88	3	150	49	7	12	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14400869--14401051	90	2.0	90	90	0	285	42	4	22	30	1.73
14402148--14402191	22	2.0	23	86	4	63	61	9	2	27	1.38
14404892--14404940	16	3.0	15	80	13	53	46	2	0	51	1.12
14408898--14408926	2	15.0	2	92	7	51	51	0	0	48	1.00
14410903--14410939	18	2.1	18	90	10	58	75	5	10	8	1.17
14411474--14411513	16	2.3	16	87	12	53	50	0	0	50	1.00
14411778--14412257	250	1.9	251	86	4	681	41	13	4	40	1.64
14413413--14413459	23	2.1	21	84	7	58	44	10	8	36	1.70
14413578--14413630	2	26.5	2	96	0	97	49	49	0	1	1.12
14417562--14417639	25	3.3	25	63	26	69	43	15	7	33	1.75
14418653--14418696	19	2.3	19	100	0	88	47	4	15	31	1.66
14419634--14419669	2	19.0	2	88	11	58	52	0	0	47	1.00
14421604--14421650	21	2.1	21	84	7	58	57	4	0	38	1.18
14421796--14421831	2	18.0	2	94	0	63	47	0	0	52	1.00
14422903--14423357	232	2.0	234	87	2	657	41	11	5	42	1.63
14424632--14424706	2	37.5	2	97	0	141	49	49	0	1	1.09
14427396--14427425	10	3.0	10	95	0	51	36	0	30	33	1.58
14427818--14427851	16	2.1	17	94	5	61	32	11	11	44	1.77
14427815--14427853	16	2.5	15	88	12	60	28	15	12	43	1.83
14427876--14427904	15	1.9	15	100	0	58	34	17	13	34	1.89
14428409--14428532	38	3.3	37	74	9	110	50	4	16	27	1.65
14428439--14428537	36	2.7	36	80	3	117	53	5	14	27	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14428555--14428631	35	2.3	31	84	8	91	48	6	14	31	1.69
14431093--14431483	59	6.7	57	82	9	441	46	6	11	35	1.66
14431091--14431483	118	3.3	118	87	6	516	46	6	11	35	1.65
14433435--14433505	35	2.1	33	82	10	81	46	7	14	32	1.71
14435107--14435149	20	2.3	18	88	8	59	4	9	13	72	1.26
14435343--14435424	30	2.7	31	73	16	80	48	0	0	51	1.00
14435348--14435473	25	5.0	25	69	17	75	50	0	0	48	1.06
14435394--14435467	22	3.5	22	78	10	82	51	1	0	47	1.09
14435428--14435467	12	3.5	12	80	13	57	55	2	0	42	1.13
14435427--14435479	22	2.4	22	87	6	63	54	3	0	41	1.18
14437927--14438001	31	2.4	31	84	0	96	34	5	14	45	1.68
14440684--14440740	26	2.2	26	84	6	71	68	7	0	24	1.14
14444134--14444285	79	1.9	79	95	0	277	44	17	13	25	1.85
14449753--14449781	14	2.0	15	93	6	51	44	0	0	55	0.99
14450567--14450629	31	2.0	33	87	6	94	47	3	11	38	1.55
14450623--14450694	24	2.8	26	76	19	73	38	1	2	56	1.22
14467852--14467886	15	2.4	15	90	4	54	45	2	0	51	1.16
14473336--14473399	32	2.0	32	84	3	85	4	26	1	67	1.19
14474363--14474409	17	2.8	18	84	12	64	61	4	0	34	1.15
14475791--14475860	30	2.4	30	80	9	81	41	0	1	57	1.08
14476931--14476978	25	1.9	25	91	0	78	41	0	22	35	1.54
14477563--14477737	51	3.4	50	73	10	147	39	14	6	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14478829--14478901	34	2.1	34	87	5	103	27	12	12	47	1.76
14482222--14482290	34	2.1	33	83	8	86	46	7	14	31	1.72
14483890--14483932	20	2.3	18	88	8	59	4	9	13	72	1.26
14484127--14484225	36	2.6	38	82	6	121	50	0	0	49	1.00
14484159--14484188	15	1.9	16	93	6	53	56	0	0	43	0.99
14484175--14484254	23	3.8	22	76	20	80	52	1	0	46	1.08
14484135--14484277	40	3.7	40	80	9	147	49	1	0	48	1.09
14484212--14484260	23	2.1	24	92	3	82	57	2	0	40	1.10
14484126--14484287	36	4.4	36	72	15	111	49	1	0	49	1.08
14486700--14486730	16	1.9	16	93	0	53	32	9	19	38	1.84
14492561--14492601	22	1.9	22	85	5	57	58	0	0	41	0.98
14492585--14492641	26	2.2	26	84	6	71	66	8	0	24	1.20
14496048--14496203	79	2.0	79	93	2	269	44	16	12	26	1.83
14496988--14497063	37	2.1	37	100	0	152	31	18	10	39	1.85
14501694--14501722	14	2.0	15	93	6	51	44	0	0	55	0.99
14502508--14502570	31	2.0	33	87	6	94	47	3	11	38	1.55
14502576--14502627	27	2.0	26	81	11	61	36	5	5	51	1.50
14507618--14507672	28	2.0	28	82	7	67	38	1	0	60	1.08
14509686--14509713	2	14.0	2	100	0	56	50	0	0	50	1.00
14525376--14525443	30	2.3	30	82	5	84	4	27	1	66	1.20
14526192--14526216	5	5.0	5	100	0	50	20	0	20	60	1.37
14526408--14526454	17	2.8	17	81	9	60	63	4	0	31	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14527844--14527904	14	4.4	14	78	11	54	37	0	1	60	1.07
14527858--14527921	14	4.3	15	75	14	53	42	0	1	56	1.09
14529001--14529048	25	1.9	25	91	0	78	41	0	22	35	1.54
14529666--14529812	52	2.8	52	79	6	161	39	14	5	40	1.69
14529647--14529812	52	3.1	53	76	8	158	39	14	6	39	1.71
14530019--14530074	11	5.3	10	80	14	51	17	1	3	76	1.01
14530034--14530075	14	3.2	14	74	19	54	23	2	0	73	0.94
14530017--14530075	25	2.4	25	88	2	84	18	1	3	76	1.02
14532680--14532714	13	2.7	13	90	0	52	11	0	2	85	0.69
14532680--14532732	19	2.8	19	77	8	54	11	0	7	81	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129