genome.fa.s24.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  9  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1441851--1441903	26	2.0	26	96	0	97	26	24	20	28	1.99
1442561--1442610	26	2.0	25	96	4	91	30	28	14	28	1.95
1443214--1443266	26	2.0	26	96	0	97	26	24	20	28	1.99
1445362--1445462	26	3.9	26	90	1	150	26	25	19	27	1.99
1447401--1448294	452	2.0	451	92	1	1477	33	21	17	27	1.96
1448506--1448558	26	2.0	26	92	0	88	28	22	22	26	1.99
1447852--1450429	890	2.9	887	87	3	3610	26	24	23	25	2.00
1451407--1451459	26	2.0	26	96	0	97	26	28	20	24	1.99
1452310--1452362	26	2.0	26	100	0	106	26	26	20	26	1.99
1453681--1453737	26	2.2	26	83	0	69	59	10	8	21	1.57
1450438--1454818	895	4.9	894	86	3	5799	25	24	23	25	2.00
1454107--1454157	26	2.0	26	96	0	93	31	27	13	27	1.94
1455776--1455826	26	2.0	26	96	0	93	29	25	17	27	1.98
1456679--1467276	890	11.8	900	87	3	14059	25	24	24	25	2.00
1458461--1458513	26	2.0	26	96	0	97	26	26	22	24	2.00
1459360--1459410	26	2.0	26	96	0	93	25	25	19	29	1.99
1460258--1460315	25	2.2	26	90	6	91	27	25	18	27	1.98
1461153--1461205	26	2.0	26	96	0	97	26	26	18	28	1.98
1462902--1462954	26	2.0	26	96	0	97	28	26	18	26	1.98
1463792--1463844	26	2.0	26	96	0	97	28	26	18	26	1.98
1464688--1464740	26	2.0	26	100	0	106	26	26	20	26	1.99
1465590--1465642	26	2.0	26	92	0	88	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1466489--1466541	26	2.0	26	88	0	79	26	24	20	28	1.99
1466515--1469390	710	4.0	718	86	4	3870	26	23	23	26	2.00
1472506--1472558	26	2.0	26	92	0	88	30	20	20	28	1.98
1470411--1482262	904	13.4	877	84	5	13706	25	25	24	25	2.00
1477759--1477811	26	2.0	26	92	0	88	28	28	18	24	1.98
1478643--1478693	26	2.0	26	88	0	75	25	25	19	29	1.99
1479547--1479597	26	2.0	26	92	0	84	25	27	19	27	1.99
1480451--1480503	26	2.0	26	96	0	97	26	24	20	28	1.99
1482627--1482678	26	2.0	25	96	3	95	28	26	17	26	1.97
1483506--1483558	26	2.0	26	96	0	97	26	24	20	28	1.99
1482331--1485174	890	3.2	895	88	3	4138	24	25	24	25	2.00
1484436--1485920	715	2.1	712	88	3	2239	25	24	23	25	2.00
1486862--1486914	26	2.0	26	96	0	97	30	24	16	28	1.97
1487756--1487808	26	2.0	26	96	0	97	28	24	20	26	1.99
1489514--1489566	26	2.0	26	92	0	88	28	24	20	26	1.99
1490416--1490468	26	2.0	26	92	0	88	26	22	20	30	1.98
1488986--1491208	903	2.5	902	90	1	3468	26	24	23	25	2.00
1490442--1491912	704	2.1	709	88	3	2156	26	23	23	25	2.00
1492892--1492942	26	2.0	26	96	0	93	29	25	17	27	1.98
1491159--1493872	891	3.1	890	83	6	3490	25	24	24	25	2.00
1493791--1493843	26	2.0	26	88	0	79	24	22	20	32	1.98
1493632--1494057	185	2.3	185	85	3	563	21	27	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1493888--1495598	908	1.9	907	89	1	2671	25	25	23	25	2.00
1494874--1496335	731	2.0	725	88	2	2088	26	24	23	26	2.00
1495663--1499916	875	4.8	875	87	2	5593	25	24	24	25	2.00
1499143--1499194	26	2.0	25	92	3	86	30	25	17	26	1.97
1497394--1499916	874	2.8	891	86	5	3509	25	24	24	25	2.00
1499890--1499942	26	2.0	26	88	0	79	26	30	18	24	1.98
1499916--1501872	709	2.8	709	90	0	3056	26	22	23	26	2.00
1504107--1504727	308	2.0	308	91	1	996	35	16	18	29	1.93
1505882--1505932	26	2.0	26	100	0	102	27	25	19	27	1.99
1504415--1506854	891	2.8	887	84	6	2816	26	23	23	25	2.00
1507591--1507643	26	2.0	26	88	0	79	30	20	18	30	1.97
1510261--1510313	26	2.0	26	96	0	97	28	26	18	26	1.98
1508479--1511919	905	3.8	894	86	3	4557	25	24	23	25	2.00
1511893--1511945	26	2.0	26	92	0	88	28	24	20	26	1.99
1512791--1512843	26	2.0	26	92	0	88	32	28	16	22	1.96
1513696--1513746	26	2.0	26	92	0	84	29	23	17	29	1.97
1511871--1514626	904	3.1	900	87	2	3861	25	24	24	25	2.00
1514396--1514862	236	2.0	236	83	0	594	19	31	26	23	1.98
1514835--1514887	26	2.0	26	96	0	97	26	26	18	28	1.98
1514650--1517269	879	3.0	876	84	4	3338	26	24	24	25	2.00
1518958--1519036	26	3.0	26	86	0	122	27	24	17	30	1.97
1519888--1519937	25	2.0	26	88	4	75	26	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1520778--1520830	26	2.0	26	85	0	70	32	20	18	28	1.97
1517304--1523080	897	6.4	904	85	3	7542	25	24	24	25	2.00
1524501--1525075	289	2.0	289	91	0	925	33	25	17	23	1.96
1525269--1525321	26	2.0	26	100	0	106	26	26	20	26	1.99
1525751--1525814	26	2.5	26	100	0	128	46	23	6	23	1.74
1526206--1526258	26	2.0	26	96	0	97	26	24	20	28	1.99
1527108--1527160	26	2.0	26	96	0	97	26	26	22	24	2.00
1528006--1528056	26	2.0	26	100	0	102	29	27	15	27	1.96
1524788--1538951	898	15.4	901	72	12	8128	25	25	23	25	2.00
1530850--1530899	26	1.9	26	95	0	91	26	24	20	30	1.98
1532816--1532868	26	2.0	26	96	0	97	26	28	20	24	1.99
1533718--1533770	26	2.0	26	88	0	79	28	22	20	28	1.99
1532842--1538952	873	6.9	872	83	6	6714	25	24	24	25	2.00
1537262--1537321	25	2.4	25	81	8	79	30	28	16	25	1.97
1538161--1538239	26	3.0	26	92	0	140	27	27	18	25	1.98
1537272--1538952	915	1.8	918	89	3	2628	25	24	24	25	2.00
1540673--1540725	26	2.0	26	96	0	97	26	28	20	24	1.99
1541571--1541623	26	2.0	26	88	0	79	26	24	20	28	1.99
1544078--1544130	26	2.0	26	82	7	63	30	20	18	30	1.97
1544981--1545033	26	2.0	26	92	0	88	28	24	20	26	1.99
1545883--1545935	26	2.0	26	100	0	106	26	26	20	26	1.99
1541640--1547974	893	7.1	895	86	4	8362	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1547624--1547676	26	2.0	26	100	0	106	26	26	20	26	1.99
1548383--1548433	26	2.0	26	92	0	84	29	23	17	29	1.97
1549274--1549324	26	2.0	26	92	0	84	29	27	17	25	1.98
1547984--1550851	891	3.2	887	87	5	3913	26	24	23	25	2.00
1548885--1550855	879	2.2	895	87	4	2779	26	24	23	24	2.00
1552414--1552464	26	2.0	26	96	0	93	29	25	17	27	1.98
1553731--1554084	158	2.2	158	81	2	388	22	28	27	21	1.99
1554058--1554110	26	2.0	26	92	0	88	32	24	15	28	1.95
1555873--1555924	26	2.0	26	96	0	95	26	25	19	28	1.98
1556782--1556833	26	2.0	26	96	0	95	26	25	19	28	1.98
1557689--1557740	26	2.0	26	92	0	86	25	25	21	28	1.99
1553882--1559531	908	6.3	907	88	2	7300	25	24	24	25	2.00
1559469--1559520	26	2.0	25	96	3	95	25	26	21	26	1.99
1559362--1559698	173	1.9	174	86	1	480	21	29	26	22	1.99
1559642--1559694	26	2.0	26	96	0	97	26	24	20	28	1.99
1559775--1559806	11	2.9	11	90	0	55	25	31	28	15	1.96
1560556--1560608	26	2.0	26	92	0	88	26	26	18	28	1.98
1559538--1561521	900	2.2	904	87	2	2790	25	25	24	25	2.00
1561628--1561678	26	2.0	26	96	0	93	27	27	17	27	1.98
1564001--1564298	159	1.9	161	84	3	404	19	30	26	23	1.98
1562601--1564933	867	2.7	866	89	2	3433	25	24	24	25	2.00
1564232--1565744	726	2.1	720	89	1	2323	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1569875--1569924	26	1.9	26	100	0	100	24	28	20	28	1.99
1569767--1571715	898	2.2	901	87	1	2854	25	24	24	25	2.00
1571419--1572040	339	1.8	337	85	2	863	18	32	25	23	1.97
1571826--1572199	159	2.4	158	85	3	502	19	28	28	23	1.98
1572176--1572225	26	1.9	26	95	0	91	22	26	22	30	1.99
1573414--1573466	26	2.0	26	96	0	97	28	26	18	26	1.98
1573440--1573774	171	2.0	171	84	3	442	20	25	31	22	1.98
1576812--1576864	26	2.0	26	96	0	97	26	24	20	28	1.99
1576414--1584312	904	8.5	902	75	11	6046	25	24	24	25	2.00
1579525--1579577	26	2.0	26	92	0	88	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129