genome.fa.s24.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  82  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13217818--13217882	16	4.1	15	77	22	55	18	1	4	75	1.05
13218389--13218417	10	2.9	10	100	0	58	62	0	0	37	0.96
13230630--13230682	22	2.4	22	90	6	81	47	0	0	52	1.00
13230629--13230683	21	2.6	22	81	18	73	49	0	0	50	1.00
13230988--13231060	11	6.0	13	72	15	50	60	1	1	36	1.14
13230988--13231042	11	4.7	12	78	10	60	61	1	0	36	1.06
13231135--13231207	33	2.3	31	77	11	74	45	0	1	53	1.09
13250313--13250347	18	2.0	18	88	5	54	71	8	8	11	1.31
13250766--13250839	18	4.2	18	75	16	75	63	0	1	35	1.03
13250759--13250833	36	2.1	36	87	7	109	62	0	1	36	1.04
13251355--13251401	17	3.1	15	80	14	51	42	0	2	55	1.12
13251365--13251407	17	2.5	17	88	0	68	41	0	2	55	1.12
13254492--13254537	18	2.4	20	89	7	69	6	2	10	80	0.98
13254492--13254538	19	2.5	20	82	10	62	6	2	10	80	0.96
13260402--13260524	42	2.9	42	78	7	122	34	13	13	38	1.84
13261650--13261695	19	2.5	19	85	3	58	13	4	4	78	1.05
13265145--13265186	20	2.0	21	86	13	61	21	4	2	71	1.16
13265429--13265468	14	2.7	15	84	3	55	17	0	25	57	1.40
13265436--13265497	22	2.9	21	76	7	63	17	3	29	50	1.62
13265478--13265613	29	4.8	28	78	11	95	20	2	32	44	1.64
13265552--13265612	28	2.2	27	85	5	77	19	1	32	45	1.60
13265560--13265625	29	2.3	30	80	12	77	19	3	31	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13265753--13265797	3	15.3	3	81	4	56	33	2	2	62	1.20
13265750--13265794	23	2.0	23	95	0	81	35	2	2	60	1.22
13265906--13265961	3	20.0	3	78	10	57	30	1	1	66	1.12
13266754--13266800	7	6.6	7	79	13	51	2	0	14	82	0.75
13267802--13267854	22	2.4	22	87	6	72	30	13	24	32	1.93
13267921--13268041	22	5.5	22	79	7	129	33	14	22	29	1.94
13267940--13268041	44	2.3	43	85	9	143	34	13	20	31	1.92
13267987--13268180	95	2.0	95	82	5	232	39	18	19	23	1.93
13268082--13268149	22	3.1	22	80	4	66	38	17	17	26	1.92
13268146--13268217	37	1.9	37	85	0	99	52	18	13	15	1.74
13275077--13275121	21	2.1	21	84	8	56	37	6	8	46	1.61
13276805--13276844	15	2.7	15	92	3	64	15	0	27	57	1.38
13276804--13276873	36	1.9	36	85	5	97	17	2	28	51	1.59
13276861--13277002	29	5.0	29	84	5	166	16	2	33	47	1.61
13276919--13277004	16	5.8	16	71	15	67	20	2	32	44	1.65
13276935--13276986	13	3.8	13	73	14	50	17	3	28	50	1.64
13276911--13277015	29	3.6	29	89	2	104	18	1	33	46	1.60
13276894--13277024	58	2.3	57	80	10	142	18	1	35	45	1.59
13282474--13282503	11	2.7	11	89	0	51	50	20	0	30	1.49
13284748--13284777	12	2.5	12	94	0	51	33	20	10	36	1.86
13296557--13296587	10	3.1	10	100	0	62	51	0	0	48	1.00
13297398--13297441	22	2.0	23	81	4	54	68	9	0	22	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13306492--13306761	41	6.7	40	81	5	263	43	20	11	24	1.85
13306492--13306761	123	2.2	120	84	5	346	43	20	11	24	1.85
13307259--13307484	46	4.9	46	85	1	285	31	13	12	41	1.83
13308320--13308352	15	2.2	15	100	0	66	48	12	18	21	1.80
13308655--13308729	16	4.5	16	74	12	62	8	13	0	78	0.95
13308633--13308782	11	13.4	10	71	23	70	7	14	0	78	1.00
13308646--13308730	33	2.5	34	81	12	95	8	14	0	77	0.98
13308653--13308773	9	14.1	8	71	19	57	7	14	0	77	1.02
13313089--13313124	16	2.2	16	90	0	54	27	5	0	66	1.13
13313098--13313134	8	4.6	8	93	0	65	24	0	0	75	0.80
13313302--13313339	13	3.0	12	88	11	58	18	0	2	78	0.86
13313393--13313451	19	3.3	18	77	9	59	72	8	5	13	1.24
13314615--13314726	55	2.0	55	96	0	206	47	15	5	32	1.68
13317804--13317858	19	2.7	20	72	16	51	69	3	1	25	1.15
13318221--13318269	5	9.0	5	80	12	53	75	0	4	20	0.96
13318328--13318387	27	2.1	29	82	11	72	61	0	5	33	1.17
13318464--13318536	29	2.5	29	82	13	87	50	0	2	46	1.15
13319291--13319369	39	2.0	39	87	0	113	32	11	7	48	1.68
13319692--13319746	28	1.9	29	82	10	69	56	0	0	43	0.99
13319729--13319762	16	2.1	17	88	5	52	67	0	0	32	0.91
13319697--13319766	28	2.6	27	72	14	65	61	0	0	38	0.96
13320392--13320426	11	3.5	10	85	14	54	77	2	0	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13320392--13320452	16	3.9	16	76	8	63	70	1	3	24	1.11
13323061--13323093	15	2.1	17	88	11	52	72	0	3	24	0.98
13323321--13323375	27	2.2	26	81	15	62	21	18	25	34	1.96
13336049--13336465	46	8.9	46	84	7	491	27	12	23	37	1.91
13336049--13336465	140	3.0	140	84	7	522	27	12	23	37	1.91
13336047--13336464	95	4.4	94	84	6	517	27	12	23	36	1.91
13340548--13341210	131	5.1	131	82	4	624	47	6	6	39	1.54
13341120--13341315	103	1.9	105	83	8	256	44	8	3	43	1.51
13340990--13341445	231	2.0	231	83	5	571	45	8	5	40	1.56
13341226--13341255	16	1.9	16	93	6	53	56	3	0	40	1.16
13341212--13341507	130	2.3	131	80	5	332	47	9	6	36	1.61
13341672--13341716	2	22.5	2	100	0	90	48	0	0	51	1.00
13350160--13350184	4	6.2	4	100	0	50	28	0	0	72	0.86
13350984--13351075	45	2.0	45	100	0	184	43	4	8	43	1.55
13351208--13351318	56	2.0	56	94	0	195	36	4	12	46	1.62
13352515--13352548	16	2.2	15	89	5	50	82	0	0	17	0.67
13352586--13352641	26	2.2	24	84	6	67	44	3	7	44	1.48
13352906--13353085	53	3.4	51	79	13	200	53	8	10	27	1.63
13357003--13357103	14	6.9	14	71	15	62	79	0	10	9	0.95
13357004--13357103	16	6.3	15	75	17	78	80	0	11	9	0.92
13357006--13357112	46	2.3	45	84	9	126	78	0	13	8	0.96
13357004--13357115	22	4.9	23	77	8	95	77	0	13	8	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13357055--13357103	7	6.7	7	84	9	53	81	0	12	6	0.86
13357597--13357755	80	2.0	80	97	1	302	47	6	24	21	1.75
13357854--13357895	22	1.9	22	85	9	59	45	4	23	26	1.73
13357886--13358135	63	4.0	63	83	0	293	36	8	24	30	1.86
13358519--13358583	22	2.8	24	72	11	71	43	12	12	32	1.79
13359042--13359232	41	4.7	41	82	3	170	24	13	14	47	1.80
13359166--13359328	44	3.8	42	76	10	136	24	12	17	44	1.84
13360943--13361040	51	1.9	50	87	2	142	48	7	13	30	1.69
13361804--13361869	29	2.3	27	82	12	71	30	4	4	60	1.37
13361804--13361876	30	2.5	30	80	12	82	31	4	5	58	1.39
13362013--13362062	2	25.0	2	87	0	73	44	2	0	54	1.11
13362082--13362136	13	3.9	14	76	16	51	52	14	1	30	1.52
13363293--13363332	20	2.1	19	85	4	53	70	0	2	27	1.01
13363322--13363360	18	2.3	18	86	8	55	66	2	5	25	1.25
13363322--13363369	16	2.9	16	84	6	60	66	4	6	22	1.32
13364159--13364212	22	2.5	22	76	8	58	46	12	5	35	1.66
13377474--13377506	12	2.8	12	90	4	50	78	12	0	9	0.95
13381159--13381192	3	11.3	3	93	0	59	2	0	29	67	1.05
13383867--13383933	32	2.1	32	83	8	84	44	0	2	52	1.16
13384186--13384238	21	2.5	21	84	0	70	35	0	0	64	0.94
13385361--13385552	105	1.8	103	84	8	262	50	7	2	39	1.45
13385452--13385690	85	2.9	81	80	9	261	49	8	3	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13386362--13386414	19	2.8	18	77	8	61	54	3	0	41	1.18
13386869--13386948	31	2.6	30	78	11	81	42	15	5	37	1.68
13386969--13387013	19	2.3	19	88	7	63	42	0	6	51	1.28
13387960--13387993	17	2.0	17	88	0	50	64	0	2	32	1.08
13388012--13388060	19	2.6	19	80	0	62	51	4	4	40	1.40
13388073--13388154	31	2.6	31	84	3	103	40	4	14	40	1.68
13388938--13388967	11	2.7	11	100	0	60	53	0	0	46	1.00
13389699--13389744	19	2.4	19	82	7	58	58	4	2	34	1.30
13389754--13389849	31	3.1	31	83	3	113	46	9	9	34	1.68
13393958--13394014	22	2.6	22	83	5	62	50	3	10	35	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129