genome.fa.s24.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  25  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3439411--3439463	26	2.0	26	92	0	88	28	24	20	26	1.99
3439880--3442820	876	3.4	865	84	5	3639	26	24	22	25	2.00
3443611--3443663	26	2.0	26	92	0	88	26	22	22	28	1.99
3444078--3448886	875	5.5	867	84	5	5376	26	24	23	25	2.00
3446345--3446397	26	2.0	26	88	0	79	30	24	15	30	1.95
3448116--3449504	696	2.0	702	87	3	2042	27	23	22	25	2.00
3448937--3452173	872	3.7	864	87	2	4407	26	24	23	25	2.00
3455781--3455833	26	2.0	26	92	0	88	24	26	22	26	2.00
3454923--3461116	898	6.8	875	72	13	2935	25	24	24	25	2.00
3457628--3457680	26	2.0	26	92	0	88	28	24	18	28	1.98
3458528--3458580	26	2.0	26	92	0	88	28	24	20	26	1.99
3456852--3461116	898	4.8	898	87	2	5953	25	24	24	25	2.00
3459431--3459483	26	2.0	26	96	0	97	24	26	22	26	2.00
3460330--3460381	26	2.0	26	96	0	95	26	25	19	28	1.98
3461938--3461990	26	2.0	26	92	0	88	26	26	20	26	1.99
3462675--3462727	26	2.0	26	88	0	79	28	28	18	24	1.98
3461906--3464158	730	3.1	727	85	6	2975	26	23	23	26	2.00
3466013--3466065	26	2.0	26	96	0	97	28	26	18	26	1.98
3467583--3467651	26	2.7	26	97	0	129	27	26	18	27	1.98
3467708--3467760	26	2.0	26	96	0	97	28	26	18	26	1.98
3467525--3467760	125	1.9	125	89	1	366	18	30	22	28	1.97
3467801--3468051	126	2.0	126	92	0	412	17	21	37	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3469647--3469699	26	2.0	26	92	0	88	28	24	18	28	1.98
3470548--3470600	26	2.0	26	96	0	97	26	24	20	28	1.99
3468906--3472211	904	3.7	900	88	3	4640	25	25	24	25	2.00
3476418--3476473	26	2.2	26	90	0	85	28	23	19	28	1.98
3474275--3478063	896	4.2	896	86	3	4947	25	24	23	25	2.00
3477298--3478681	708	2.0	708	89	0	2108	28	23	22	26	1.99
3478904--3478953	26	1.9	26	100	0	100	22	24	22	32	1.98
3481294--3481346	26	2.0	26	92	0	88	28	26	16	28	1.97
3482182--3482234	26	2.0	26	92	0	88	26	26	20	26	1.99
3480429--3482894	900	2.8	884	85	5	3358	26	24	23	25	2.00
3483653--3483702	26	1.9	26	95	0	91	26	24	20	30	1.98
3484497--3484546	26	1.9	26	95	0	91	28	28	16	28	1.97
3487055--3487110	29	1.9	29	96	0	103	21	19	39	19	1.93
3486311--3489033	906	3.0	899	83	7	3302	25	24	23	25	2.00
3489140--3489218	26	3.0	26	96	0	140	25	25	20	29	1.99
3489939--3490462	172	3.0	173	87	3	761	20	29	27	21	1.98
3490207--3490259	26	2.0	26	96	0	97	28	26	18	26	1.98
3490380--3490432	26	2.0	26	96	0	97	28	28	16	26	1.97
3491101--3494545	872	3.9	869	83	6	3859	26	24	23	26	2.00
3492860--3492912	26	2.0	26	96	0	97	28	26	18	26	1.98
3491984--3494423	901	2.7	890	86	3	3303	27	23	22	26	2.00
3496362--3496414	26	2.0	26	92	7	90	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3497251--3497303	26	2.0	26	96	0	97	24	26	20	28	1.99
3495888--3506509	899	12.0	897	84	5	12760	25	24	23	25	2.00
3498156--3498207	26	2.0	26	92	0	86	25	25	21	28	1.99
3499041--3499092	26	2.0	26	96	3	97	26	25	21	26	1.99
3500809--3500861	26	2.0	26	85	0	70	32	24	18	24	1.97
3502552--3502604	26	2.0	26	92	0	88	26	22	22	28	1.99
3503431--3503483	26	2.0	26	88	0	79	30	28	16	24	1.97
3504300--3504352	26	2.0	26	88	0	79	28	26	18	26	1.98
3505192--3505244	26	2.0	26	96	0	97	26	24	20	28	1.99
3495888--3511000	899	17.2	884	79	9	11677	26	24	23	25	2.00
3506081--3506133	26	2.0	26	88	0	79	26	22	20	30	1.98
3506910--3506962	26	2.0	26	88	0	79	26	28	18	26	1.98
3505695--3508182	827	3.0	821	87	4	3442	24	25	24	25	2.00
3507728--3507806	26	3.0	26	98	0	149	27	26	18	26	1.98
3508633--3508685	26	2.0	26	85	0	70	26	22	20	30	1.98
3507780--3510985	871	3.7	868	86	5	4381	26	24	23	25	2.00
3511056--3511108	26	2.0	26	96	0	97	24	26	22	26	2.00
3511729--3511781	26	2.0	26	96	0	97	28	26	18	26	1.98
3510398--3512358	684	2.9	683	87	3	2808	28	22	22	26	1.99
3511879--3517013	855	5.9	849	81	8	5617	26	24	24	25	2.00
3514345--3514397	26	2.0	26	88	0	79	30	22	18	28	1.98
3516090--3516142	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3516987--3517039	26	2.0	26	88	0	79	28	26	18	26	1.98
3520087--3520139	26	2.0	26	100	0	106	26	26	20	26	1.99
3520990--3521042	26	2.0	26	88	0	79	26	24	18	30	1.98
3519219--3534274	900	16.8	893	81	6	14929	26	24	23	25	2.00
3521877--3521931	26	2.1	26	89	0	83	29	23	20	27	1.99
3519219--3523095	889	4.3	891	85	3	4914	25	25	24	25	2.00
3523638--3523690	26	2.0	26	96	0	97	26	24	20	28	1.99
3526341--3526393	26	2.0	26	92	0	88	26	22	20	30	1.98
3527246--3527296	26	2.0	26	96	0	93	33	29	9	27	1.89
3528113--3528164	26	2.0	26	92	0	86	30	19	19	30	1.96
3529012--3529064	26	2.0	26	96	0	97	26	24	22	26	2.00
3529893--3529948	26	2.2	26	90	0	85	32	23	16	28	1.96
3530802--3530854	26	2.0	26	92	0	88	28	26	16	28	1.97
3531695--3531746	26	2.0	26	92	0	86	28	25	19	26	1.98
3533499--3533550	26	2.0	26	88	0	77	28	23	19	28	1.98
3527836--3534274	895	7.2	893	86	3	8222	25	24	23	25	2.00
3534249--3534299	25	2.0	25	100	0	102	27	23	21	27	1.99
3537034--3537086	26	2.0	26	92	0	88	28	24	18	28	1.98
3537941--3537990	26	1.9	26	95	0	91	26	24	20	30	1.98
3536746--3544290	906	8.4	900	84	6	9049	25	25	23	25	2.00
3539739--3539791	26	2.0	26	96	0	97	26	28	20	24	1.99
3540212--3540307	26	3.7	26	80	2	111	51	15	8	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3540212--3540312	53	1.9	52	87	2	148	51	14	8	24	1.71
3540237--3540321	26	3.2	26	74	14	84	55	12	8	23	1.64
3540688--3540740	26	2.0	26	96	0	97	30	24	16	28	1.97
3542448--3542500	26	2.0	26	92	0	88	24	24	22	28	2.00
3544209--3544258	26	1.9	26	95	0	91	26	28	20	26	1.99
3545846--3545898	26	2.0	26	96	0	97	28	26	18	26	1.98
3544826--3546457	813	2.0	813	88	1	2421	26	24	24	25	2.00
3545648--3551657	902	6.7	896	84	4	7462	25	24	24	25	2.00
3548559--3548608	26	1.9	26	91	0	82	30	26	18	26	1.98
3550309--3550361	26	2.0	26	88	0	79	28	22	18	30	1.98
3552816--3552868	26	2.0	26	88	0	79	28	22	18	30	1.98
3553723--3553772	26	1.9	26	95	0	91	26	24	20	30	1.98
3551954--3554163	890	2.5	886	86	2	3124	26	24	24	25	2.00
3556399--3556451	26	2.0	26	100	0	106	26	26	20	26	1.99
3558878--3558932	26	2.1	26	96	0	101	23	27	20	29	1.99
3560434--3560486	26	2.0	26	92	0	88	24	24	20	30	1.99
3559627--3564811	903	5.8	897	86	3	6897	25	24	23	25	2.00
3562231--3562281	26	2.0	26	96	0	93	27	27	17	27	1.98
3564026--3564078	26	2.0	26	92	0	88	26	26	20	26	1.99
3565647--3565698	26	2.0	26	88	0	77	30	19	19	30	1.96
3565673--3567130	718	2.0	713	88	3	2159	27	23	22	26	2.00
3566385--3569027	878	3.0	859	81	9	2967	25	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3568135--3568187	26	2.0	26	92	0	88	28	24	18	28	1.98
3568864--3569204	178	1.9	179	86	4	492	21	26	29	22	1.99
3570042--3570092	26	2.0	26	92	0	84	23	29	19	27	1.98
3570922--3570972	26	2.0	26	92	0	84	33	21	15	29	1.94
3569180--3571709	887	2.8	886	85	4	3386	25	24	23	25	2.00
3571238--3572240	505	2.0	505	92	1	1690	30	24	20	24	1.99
3572327--3572379	26	2.0	26	96	0	97	26	28	20	24	1.99
3573231--3573283	26	2.0	26	92	7	90	30	26	16	26	1.97
3573602--3573654	26	2.0	26	100	0	106	26	26	20	26	1.99
3573305--3585015	903	13.2	899	83	6	14035	25	25	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129