genome.fa.s24.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  120  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20309946--20310010	10	6.9	9	80	18	62	6	1	7	84	0.83
20309966--20310009	18	2.4	18	85	11	54	4	2	9	84	0.85
20310019--20310478	41	11.1	41	88	4	651	37	22	15	24	1.93
20311704--20311747	11	4.4	9	83	16	52	0	18	0	81	0.68
20311691--20311768	25	3.4	23	72	13	63	5	17	0	76	0.96
20311704--20311747	20	2.2	19	84	11	61	0	18	0	81	0.68
20311718--20311747	10	3.0	10	90	0	51	0	16	0	83	0.65
20311715--20311762	20	2.5	20	82	3	53	4	14	0	81	0.84
20311688--20311774	24	3.7	23	76	16	81	6	17	0	75	1.01
20315587--20315611	12	2.1	12	100	0	50	76	8	0	16	1.02
20315645--20316055	117	3.5	117	84	6	535	35	12	7	44	1.71
20315645--20316036	176	2.2	176	83	7	494	35	13	7	43	1.72
20316073--20316125	12	4.5	11	77	11	52	83	1	1	13	0.82
20316063--20316132	11	6.4	11	82	12	58	80	1	4	14	0.94
20316063--20316147	17	5.1	16	75	13	57	77	1	4	16	0.99
20316058--20316214	16	8.5	17	68	21	61	75	4	4	15	1.13
20316058--20316204	9	16.1	8	68	25	55	74	4	4	16	1.14
20317165--20317208	17	2.3	20	81	14	58	63	2	2	31	1.19
20317198--20317292	21	4.7	21	68	21	60	67	4	1	27	1.16
20335252--20335276	13	1.9	13	100	0	50	24	16	16	44	1.86
20335429--20335471	17	2.6	16	77	3	50	44	0	4	51	1.22
20350281--20350319	5	7.6	5	83	16	53	79	17	2	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20351681--20351995	105	3.0	105	93	0	533	36	16	15	31	1.91
20359070--20359105	18	1.9	19	88	5	56	27	2	0	69	1.02
20359295--20359432	61	2.3	57	84	10	163	47	1	4	47	1.31
20359295--20359452	57	2.7	57	79	9	169	47	1	5	46	1.32
20359442--20359508	25	2.8	24	75	9	73	41	7	4	46	1.52
20360086--20360125	14	2.9	14	86	13	57	50	0	0	50	1.00
20360088--20360130	18	2.4	18	84	7	52	51	0	0	48	1.00
20362200--20362230	16	2.0	16	93	6	55	77	0	3	19	0.90
20363627--20363681	28	2.0	28	82	7	67	47	0	3	49	1.19
20363635--20363936	147	2.0	148	99	0	597	50	1	5	41	1.37
20367319--20367421	39	2.6	39	95	0	179	41	3	23	31	1.72
20367551--20367580	14	2.1	14	100	0	60	13	20	26	40	1.89
20373219--20373278	24	2.6	22	72	27	61	60	3	28	8	1.42
20381257--20381327	29	2.3	29	79	13	81	49	0	4	46	1.21
20389926--20389958	8	4.1	8	92	7	50	39	0	0	60	0.97
20391294--20391341	3	16.0	3	91	0	69	66	6	0	27	1.15
20391775--20391813	13	2.6	16	76	23	57	58	12	7	20	1.58
20395398--20395435	20	1.9	20	88	0	58	60	0	0	39	0.97
20396541--20396647	38	2.8	38	97	1	196	43	5	4	45	1.48
20396711--20396742	14	2.2	15	94	5	57	50	9	6	34	1.60
20397813--20397842	15	2.0	15	93	0	51	43	6	6	43	1.57
20397916--20397962	17	2.9	17	84	9	55	53	4	0	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20397933--20397967	17	2.1	17	89	10	54	48	5	0	45	1.26
20398791--20398815	2	12.5	2	100	0	50	48	0	0	52	1.00
20413021--20413056	12	3.2	12	84	15	58	50	0	0	50	1.00
20413009--20413088	30	2.6	29	77	16	81	51	1	0	47	1.08
20413191--20413218	8	3.5	8	100	0	56	78	0	0	21	0.75
20413957--20414994	342	3.0	346	98	1	2003	30	25	18	25	1.98
20424239--20424296	25	2.2	27	84	6	75	67	1	27	3	1.17
20424331--20424355	13	1.9	13	100	0	50	92	0	8	0	0.40
20427066--20427111	23	2.0	23	82	0	56	45	4	4	45	1.43
20428150--20428188	13	3.0	13	80	0	51	41	0	0	58	0.98
20431822--20431847	13	2.0	13	100	0	52	30	30	0	38	1.58
20432133--20432158	13	2.0	13	100	0	52	30	15	15	38	1.88
20432399--20432453	12	4.7	11	79	18	58	47	0	0	52	1.00
20432408--20432473	12	5.6	12	76	15	57	48	0	0	51	1.00
20432399--20432460	13	5.0	12	74	18	56	48	0	0	51	1.00
20432412--20432471	23	2.5	24	76	10	61	50	0	0	50	1.00
20432580--20432611	12	2.4	14	90	10	50	28	0	3	68	1.04
20432621--20432670	24	2.1	23	81	3	55	42	6	6	46	1.53
20433176--20433270	41	2.3	42	77	14	99	42	2	0	55	1.11
20434262--20434290	12	2.5	12	94	5	51	51	0	0	48	1.00
20434275--20434317	15	2.9	15	83	13	54	41	0	2	55	1.12
20434263--20434317	14	3.9	14	82	15	53	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436690--20437069	188	2.0	188	95	0	688	24	17	22	36	1.95
20439185--20439238	20	2.7	20	85	2	72	38	0	0	61	0.96
20439195--20439253	12	4.6	13	72	16	52	37	0	0	62	0.95
20439175--20439251	20	3.5	20	68	19	55	38	0	0	61	0.96
20446892--20446917	2	13.0	2	100	0	52	50	0	0	50	1.00
20448218--20448396	89	2.0	89	83	6	229	37	27	4	29	1.76
20448910--20448978	24	2.8	24	80	6	77	17	34	10	37	1.83
20448893--20448958	25	2.7	24	81	6	71	21	34	7	36	1.82
20449509--20449651	52	2.7	51	82	8	164	26	19	9	44	1.80
20449679--20449720	11	3.8	11	87	0	66	47	28	0	23	1.52
20449679--20449721	22	2.0	22	95	0	77	46	27	0	25	1.53
20457522--20457871	173	2.0	174	97	0	657	28	24	14	33	1.94
20461789--20461821	2	16.5	2	100	0	66	51	0	0	48	1.00
20462642--20462691	25	2.0	25	92	7	84	36	10	26	28	1.88
20463920--20463965	8	5.5	8	82	7	56	39	0	0	60	0.97
20464023--20464048	4	6.5	4	100	0	52	76	0	0	23	0.78
20469138--20469409	145	1.9	145	81	3	332	29	17	23	29	1.97
20469574--20469862	148	2.0	148	84	1	382	31	13	24	30	1.93
20469773--20469886	60	1.9	60	88	0	174	35	11	23	28	1.90
20471189--20471226	2	19.0	2	88	0	58	44	0	5	50	1.24
20472612--20472672	30	2.1	29	87	3	86	44	4	4	45	1.46
20472873--20472965	46	2.0	47	97	2	179	34	21	2	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20476578--20476607	15	2.1	15	93	6	53	46	0	0	53	1.00
20477336--20477373	8	4.8	8	90	0	58	36	0	13	50	1.42
20488877--20489000	16	7.4	16	66	19	56	49	3	1	45	1.27
20489005--20489069	23	2.7	23	86	13	87	44	0	0	55	0.99
20489005--20489127	31	4.4	27	78	19	87	40	0	2	56	1.12
20489009--20489127	13	9.6	13	70	23	80	40	0	2	57	1.12
20489028--20489131	31	3.4	31	83	11	135	39	0	2	57	1.13
20489002--20489135	13	10.5	13	67	20	59	39	0	2	58	1.11
20489737--20489820	41	2.0	43	93	4	145	38	2	7	52	1.42
20491357--20491390	11	3.0	11	87	8	50	67	0	0	32	0.91
20491360--20491420	28	2.2	28	82	14	81	63	0	0	36	0.94
20491392--20491442	20	2.5	21	72	15	54	64	0	1	33	1.05
20492072--20492117	24	2.0	23	82	4	56	56	4	4	34	1.39
20493389--20493426	13	3.0	13	85	14	53	73	0	0	26	0.83
20493489--20493534	14	3.2	14	84	3	56	41	0	2	56	1.11
20501182--20501245	32	2.0	32	96	0	119	34	14	15	35	1.88
20501698--20501844	63	2.4	62	80	7	147	40	6	5	47	1.51
20502063--20502272	62	3.4	61	78	5	181	36	9	9	44	1.69
20503600--20503648	20	2.5	20	83	6	64	20	8	16	55	1.66
20504740--20504847	37	3.1	36	77	12	102	49	0	0	50	1.07
20504764--20504848	12	7.0	12	71	9	57	45	1	0	52	1.08
20504878--20504946	24	2.8	24	82	8	86	34	2	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20512765--20512809	23	2.0	23	95	0	81	28	13	24	33	1.93
20512764--20512825	23	2.7	23	77	5	63	32	12	24	30	1.93
20514844--20514882	2	19.5	2	100	0	78	51	0	48	0	1.00
20529124--20529505	63	6.1	62	72	12	237	17	4	54	23	1.62
20529128--20529364	119	2.0	119	80	4	264	16	5	53	24	1.63
20529081--20529529	21	21.4	21	71	8	211	17	5	53	23	1.64
20529458--20529532	24	3.4	24	71	21	90	18	4	56	21	1.58
20529782--20529875	42	2.2	42	86	0	125	9	14	42	32	1.79
20531771--20531816	18	2.8	17	84	15	53	52	0	0	47	1.00
20541353--20541379	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129