genome.fa.s24.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  27  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3689872--3689928	28	2.1	27	87	9	80	80	1	1	15	0.87
3690795--3690882	42	1.9	45	82	15	110	67	1	1	30	1.06
3690901--3690929	11	2.5	12	94	5	51	79	3	0	17	0.87
3691188--3691234	10	4.8	10	84	10	62	2	6	6	85	0.82
3691199--3691233	9	3.8	9	85	7	52	0	5	8	85	0.73
3691189--3691233	19	2.4	19	92	0	72	2	6	6	84	0.85
3691216--3691435	101	2.2	100	90	2	352	28	15	13	42	1.84
3691461--3691774	42	7.5	42	89	3	474	36	23	17	22	1.94
3691461--3691774	83	3.8	83	90	0	486	36	23	17	22	1.94
3691824--3691877	28	1.9	28	92	0	90	29	35	12	22	1.91
3691852--3691936	41	2.0	42	93	2	145	32	24	17	24	1.97
3691713--3691918	69	3.0	69	94	0	349	33	28	15	22	1.94
3692136--3692272	43	3.2	42	76	13	136	34	16	13	36	1.87
3692456--3692514	22	2.7	22	84	7	75	33	18	8	38	1.81
3692764--3693086	59	5.3	58	81	11	346	32	12	8	45	1.73
3692880--3693003	66	1.9	66	91	3	205	33	12	7	46	1.70
3692823--3693062	125	1.9	125	88	5	369	34	13	7	44	1.73
3693109--3693169	16	3.8	16	75	12	63	78	1	8	11	1.02
3693096--3693170	32	2.3	31	82	11	89	77	1	8	13	1.05
3693111--3693187	26	2.9	27	74	16	79	77	1	7	12	1.03
3694110--3694275	23	7.4	23	67	23	81	69	1	1	27	1.09
3694110--3694278	28	6.3	26	65	22	84	69	1	1	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3694120--3694206	30	3.0	27	73	20	77	72	1	1	25	0.99
3694110--3694202	16	5.7	16	76	15	75	74	1	1	23	0.95
3694155--3694202	22	2.2	21	88	3	69	81	2	0	16	0.79
3694127--3694202	28	2.6	29	81	6	91	76	1	0	22	0.86
3694621--3694673	26	2.0	26	96	0	97	28	26	18	26	1.98
3697098--3697151	26	2.1	26	96	0	99	24	24	22	29	1.99
3698879--3698931	26	2.0	26	92	0	88	28	24	18	28	1.98
3699755--3701786	720	2.8	714	87	3	2888	27	23	22	26	2.00
3704633--3704684	25	2.0	26	88	3	79	26	21	23	28	1.99
3705536--3705588	26	2.0	26	96	0	97	28	26	18	26	1.98
3707327--3707379	26	2.0	26	96	0	97	26	24	20	28	1.99
3709059--3709111	26	2.0	26	96	0	97	26	24	20	28	1.99
3708181--3710642	892	2.7	900	86	2	3428	26	24	23	25	2.00
3711653--3711705	26	2.0	26	96	0	97	26	24	20	28	1.99
3712555--3712659	26	4.0	26	94	0	183	25	25	20	28	1.99
3713508--3713560	26	2.0	26	96	0	97	26	24	20	28	1.99
3714401--3714453	26	2.0	26	100	0	106	26	26	20	26	1.99
3710749--3716954	893	6.9	894	83	5	7079	25	24	23	25	2.00
3717850--3717928	26	3.0	26	96	0	140	26	24	20	29	1.99
3716370--3718664	783	2.9	786	83	6	2437	26	24	22	25	2.00
3719417--3721878	877	2.8	870	87	3	3432	25	24	24	25	2.00
3722694--3722746	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3721905--3726344	896	5.0	891	85	4	5861	25	24	24	25	2.00
3726272--3726324	26	2.0	26	96	0	97	28	26	18	26	1.98
3726113--3726528	184	2.3	185	85	2	543	22	26	27	23	1.99
3726458--3726509	26	2.0	26	96	0	95	32	23	17	26	1.96
3727298--3727350	26	2.0	26	96	0	97	28	26	18	26	1.98
3728908--3728960	26	2.0	26	92	0	88	30	24	18	26	1.98
3729796--3729848	26	2.0	26	96	0	97	26	28	20	24	1.99
3728029--3733447	858	6.1	883	82	6	6346	26	24	23	25	2.00
3733530--3733580	26	2.0	26	96	0	93	29	25	17	27	1.98
3733228--3733652	226	1.9	226	88	1	636	18	28	26	26	1.98
3734424--3734473	26	1.9	26	95	0	91	28	26	16	30	1.96
3734450--3736561	715	2.9	714	88	3	3078	26	23	23	26	2.00
3736755--3736807	26	2.0	26	100	0	106	26	26	20	26	1.99
3737651--3737703	26	2.0	26	96	0	97	26	28	20	24	1.99
3735885--3749774	894	15.4	894	77	9	12797	25	25	24	25	2.00
3740318--3740396	26	3.0	26	92	0	131	27	22	21	27	1.99
3742103--3742155	26	2.0	26	96	0	97	28	26	18	26	1.98
3742804--3743120	163	1.9	163	87	0	454	18	30	29	20	1.97
3743154--3743207	26	2.1	26	96	0	99	27	24	18	29	1.98
3744049--3744100	26	2.0	26	84	0	68	32	23	17	26	1.96
3744944--3744995	26	2.0	26	85	7	70	28	25	15	30	1.96
3745836--3745888	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3742921--3753561	893	12.1	887	81	7	11089	25	25	24	25	2.00
3747622--3747674	26	2.0	26	85	0	70	30	22	18	28	1.98
3748296--3748325	4	7.5	4	92	0	51	0	70	26	3	1.03
3748506--3748555	26	1.9	26	88	8	75	26	28	16	30	1.96
3752850--3752902	26	2.0	26	96	0	97	26	24	20	28	1.99
3754465--3754517	26	2.0	26	96	0	97	26	22	18	32	1.97
3753567--3757775	874	4.8	871	83	7	4934	25	24	23	25	2.00
3756215--3756270	26	2.2	26	96	0	103	30	25	17	26	1.97
3755341--3757774	883	2.7	883	86	5	3314	26	24	23	25	2.00
3759454--3759503	26	1.9	26	95	0	91	24	28	20	28	1.99
3762064--3762113	26	1.9	26	95	0	91	26	24	22	28	1.99
3759997--3765112	904	5.7	893	82	7	5785	25	25	24	24	2.00
3759997--3765112	899	5.8	901	83	6	6075	25	25	24	24	2.00
3764754--3764806	26	2.0	26	92	0	88	28	24	18	28	1.98
3765036--3765198	86	1.9	86	87	2	238	31	12	24	31	1.92
3765122--3767783	710	3.7	710	90	3	3931	27	23	23	25	2.00
3767100--3767143	11	4.0	11	96	0	70	18	31	36	13	1.90
3767887--3767939	26	2.0	26	88	0	79	30	22	18	28	1.98
3767913--3770721	715	3.9	717	90	3	4068	27	23	22	26	2.00
3771078--3773845	697	3.9	713	87	5	3830	26	24	22	26	2.00
3773976--3774052	26	3.0	26	96	0	136	27	25	18	28	1.98
3775616--3775668	26	2.0	26	92	0	88	24	24	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3775873--3778228	581	4.0	581	87	4	3193	30	23	19	25	1.98
3780906--3780958	26	2.0	26	96	0	97	26	24	20	28	1.99
3779162--3786289	895	8.0	898	83	5	8564	25	24	23	25	2.00
3781817--3781869	26	2.0	26	92	0	88	28	24	18	28	1.98
3783590--3783639	26	1.9	26	100	0	100	26	26	20	28	1.99
3784482--3784534	26	2.0	26	92	0	88	30	26	16	26	1.97
3785385--3785437	26	2.0	26	96	0	97	26	24	20	28	1.99
3796283--3796335	26	2.0	26	92	0	88	28	24	18	28	1.98
3797185--3797236	26	2.0	26	96	0	95	26	25	19	28	1.98
3795469--3806385	902	12.3	902	84	5	13259	25	24	24	25	2.00
3798939--3798991	26	2.0	26	100	0	106	26	26	20	26	1.99
3799841--3799893	26	2.0	26	96	0	97	26	24	20	28	1.99
3804243--3804293	26	2.0	26	92	0	84	33	23	11	31	1.91
3805152--3805204	26	2.0	26	88	0	79	30	22	20	26	1.98
3806265--3806296	12	2.7	12	95	0	55	12	34	18	34	1.89
3806880--3806930	26	2.0	26	96	0	93	33	25	11	29	1.91
3807780--3807832	26	2.0	26	96	0	97	26	24	20	28	1.99
3808681--3808733	26	2.0	26	96	0	97	26	24	20	28	1.99
3806384--3810266	901	4.3	903	86	3	5127	26	24	23	25	2.00
3809554--3809606	26	2.0	26	85	0	70	30	20	18	30	1.97
3811116--3811168	26	2.0	26	96	0	97	32	26	15	26	1.95
3811399--3814552	862	3.6	859	82	6	3493	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3813674--3813726	26	2.0	26	92	0	88	26	26	20	26	1.99
3814575--3814627	26	2.0	26	88	0	79	28	24	20	26	1.99
3815256--3815308	26	2.0	26	100	0	106	26	26	20	26	1.99
3816161--3816213	26	2.0	26	92	0	88	26	26	20	26	1.99
3819909--3819959	26	2.0	26	100	0	102	25	23	19	31	1.98
3820148--3822426	905	2.5	889	86	3	2937	27	24	22	25	2.00
3822713--3822762	26	1.9	26	91	0	82	28	26	16	30	1.96
3823609--3823706	26	3.8	26	87	5	146	30	25	17	26	1.97
3824553--3824605	26	2.0	26	100	0	106	26	26	20	26	1.99
3825428--3825480	26	2.0	26	96	0	97	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129