genome.fa.s24.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  123  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21037076--21037177	49	2.1	49	88	3	152	48	0	3	47	1.27
21040557--21040590	14	2.3	15	90	5	52	47	2	0	50	1.16
21046742--21046808	2	33.5	2	90	0	107	0	44	0	55	0.99
21054776--21054821	17	2.6	17	80	19	58	30	2	2	65	1.16
21059246--21059320	22	3.0	27	80	14	74	44	1	8	46	1.41
21059775--21059808	16	2.1	16	94	5	59	0	8	0	91	0.43
21059779--21059807	13	2.2	13	100	0	58	0	6	0	93	0.36
21059779--21059808	14	2.2	14	94	5	53	0	6	0	93	0.35
21062147--21062191	18	2.5	18	85	7	56	60	0	0	40	0.97
21062442--21062506	26	2.4	28	70	14	64	47	0	1	50	1.10
21062477--21062543	35	1.9	34	85	14	93	43	0	1	55	1.09
21062508--21062560	18	2.7	19	80	11	63	41	0	1	56	1.10
21063983--21064038	26	2.1	26	86	3	76	62	0	3	33	1.12
21065677--21065736	21	2.9	20	78	11	59	56	0	6	36	1.26
21068388--21068423	16	2.2	16	90	0	54	36	0	2	61	1.11
21083331--21083384	26	2.0	27	82	10	65	50	3	5	40	1.44
21090448--21090499	25	2.1	25	92	0	86	44	3	25	26	1.71
21100896--21100932	12	2.9	13	84	15	51	59	0	0	40	0.97
21106601--21106649	22	2.2	22	96	0	89	42	14	16	26	1.86
21108476--21108503	2	14.0	2	100	0	56	50	0	0	50	1.00
21114473--21114497	13	1.9	13	100	0	50	20	24	0	56	1.43
21116958--21117002	15	2.9	16	75	24	51	75	0	22	2	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21116950--21117017	26	2.7	25	88	2	91	72	1	20	5	1.14
21117149--21117187	19	2.0	20	90	5	62	30	5	0	64	1.15
21117391--21117422	16	1.9	17	93	6	57	59	0	0	40	0.97
21118166--21118204	19	2.1	19	85	9	53	7	10	2	79	1.02
21118871--21118919	24	2.0	25	88	4	73	32	6	0	61	1.21
21118877--21118925	24	2.0	24	84	7	64	34	6	0	59	1.22
21119510--21119557	21	2.3	20	75	10	51	50	0	0	50	1.00
21120315--21120379	29	2.2	31	86	5	89	46	0	3	50	1.17
21120386--21120468	24	3.5	24	74	11	64	45	1	0	53	1.08
21134293--21134317	2	12.5	2	100	0	50	52	0	48	0	1.00
21140166--21140207	16	2.6	16	78	14	59	64	4	0	30	1.14
21143178--21143231	27	2.0	27	100	0	108	33	14	14	37	1.88
21146681--21146721	2	20.5	2	94	0	73	51	2	0	46	1.14
21146988--21147048	19	3.2	19	81	6	70	62	1	0	36	1.05
21147009--21147050	20	2.1	20	91	8	68	69	0	0	30	0.89
21157367--21157425	23	2.6	23	71	10	66	47	0	0	52	1.00
21166336--21166367	4	8.0	4	100	0	64	50	25	0	25	1.50
21178245--21178284	20	2.0	20	90	5	62	40	5	7	47	1.54
21178563--21178593	16	1.9	16	93	0	53	54	0	0	45	0.99
21187762--21187832	19	4.1	17	81	16	76	42	0	0	57	0.98
21187770--21187830	26	2.4	26	83	5	81	40	0	0	59	0.98
21187767--21187812	6	7.7	6	85	9	58	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21190583--21190619	18	2.2	18	90	9	60	43	0	0	56	0.99
21192528--21192552	2	12.5	2	100	0	50	48	0	0	52	1.00
21194193--21194262	35	2.0	35	100	0	140	28	17	5	48	1.69
21204532--21204572	15	2.9	14	82	10	57	46	0	4	48	1.23
21216734--21216767	6	5.7	6	96	0	50	50	26	0	23	1.50
21220744--21220776	16	2.0	17	94	5	59	54	0	0	45	0.99
21220946--21221009	31	2.1	31	87	0	92	37	15	7	39	1.77
21226758--21226791	10	3.3	10	91	4	50	26	0	5	67	1.13
21227005--21227042	15	2.5	15	86	0	58	21	0	13	65	1.26
21227074--21227119	23	2.0	23	83	4	58	45	6	2	45	1.41
21235829--21235868	21	1.9	21	85	10	55	47	0	2	50	1.14
21242230--21242268	13	3.0	13	80	0	51	53	0	0	46	1.00
21243633--21243679	24	2.0	24	87	4	69	57	0	0	42	0.98
21244341--21244411	12	5.7	12	82	14	74	35	0	0	64	0.94
21244333--21244406	26	3.0	24	81	14	89	36	0	0	63	0.95
21244359--21244409	16	3.3	15	78	10	50	37	0	0	62	0.95
21256628--21256674	23	2.0	25	87	8	71	14	8	14	61	1.55
21264119--21264168	19	2.8	20	77	17	56	64	0	0	36	0.94
21280603--21280720	61	1.9	61	91	0	191	33	33	8	24	1.86
21280835--21280938	52	2.0	52	88	3	156	25	24	8	41	1.83
21281216--21281287	25	3.0	24	72	8	65	22	27	9	40	1.85
21281271--21281336	25	2.6	26	76	7	73	21	36	9	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21282076--21282219	50	2.8	50	82	12	161	28	19	9	43	1.81
21282246--21282285	11	3.6	11	93	0	71	50	27	0	22	1.50
21298463--21298534	37	1.9	37	100	0	144	33	16	19	30	1.94
21301776--21301912	69	2.0	70	91	1	222	36	13	18	31	1.90
21304308--21304359	23	2.2	24	77	16	56	42	0	1	55	1.10
21304318--21304373	18	2.9	19	78	19	62	37	0	1	60	1.07
21304750--21304793	18	2.6	17	82	10	54	40	0	0	59	0.98
21305293--21305358	27	2.4	26	77	10	69	45	0	1	53	1.09
21305362--21305420	22	2.5	24	86	13	79	37	3	0	59	1.14
21305375--21305437	17	3.7	18	73	16	53	38	1	0	60	1.07
21329191--21329359	87	1.9	87	89	4	261	51	16	14	17	1.77
21329638--21329934	150	2.0	149	97	2	562	47	18	13	20	1.82
21330777--21330813	18	2.1	18	89	0	56	27	0	0	72	0.84
21330853--21330892	13	3.1	13	81	0	53	57	0	2	40	1.12
21336858--21336885	6	4.7	6	100	0	56	32	0	0	67	0.91
21337709--21337737	13	2.1	14	93	6	51	27	0	0	72	0.85
21337709--21337749	21	2.0	21	90	0	64	29	0	0	70	0.87
21348025--21348072	19	2.7	17	78	12	51	43	0	0	56	0.99
21352120--21352257	69	2.0	69	97	0	258	34	20	13	32	1.91
21354939--21354963	5	5.0	5	100	0	50	80	0	20	0	0.72
21371866--21372155	57	5.2	57	84	7	400	31	37	7	23	1.83
21371889--21372155	105	2.5	105	90	5	390	30	37	7	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21372016--21372111	24	3.6	24	71	22	84	26	40	7	26	1.81
21372021--21372113	30	3.2	30	63	14	77	26	37	8	26	1.85
21372040--21372144	33	3.5	33	70	22	120	26	38	8	26	1.85
21371830--21372206	162	2.3	162	87	0	520	29	38	8	23	1.84
21372112--21372216	48	2.2	47	86	5	147	29	33	11	25	1.91
21372167--21372351	63	2.9	63	96	0	334	24	40	11	23	1.88
21372288--21372476	72	2.6	72	89	0	288	25	38	12	23	1.89
21372343--21372471	33	3.7	33	71	15	107	25	38	12	23	1.90
21374345--21374398	21	2.5	22	84	6	65	40	0	0	59	0.98
21374352--21374446	13	7.2	13	71	11	61	33	1	0	65	1.00
21374403--21374448	11	4.0	11	78	10	56	26	2	0	71	0.97
21374396--21374451	24	2.3	24	81	3	76	32	1	0	66	1.03
21374408--21374449	15	2.6	16	81	11	50	26	2	0	71	0.98
21374708--21374743	13	2.8	13	86	0	54	50	0	2	47	1.15
21376618--21376646	13	2.1	14	93	6	51	37	0	0	62	0.96
21376616--21376659	14	3.0	15	80	16	56	43	0	0	56	0.99
21378149--21378186	12	3.5	11	86	13	53	71	0	0	28	0.87
21386025--21386108	42	2.0	41	90	2	132	16	7	13	63	1.51
21386025--21386108	22	4.0	21	76	14	77	16	7	13	63	1.51
21389151--21389200	26	1.9	26	84	8	66	38	2	6	54	1.37
21389337--21389411	12	6.1	12	79	10	62	36	0	5	58	1.21
21389355--21389434	23	3.3	24	84	5	81	41	1	2	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21389364--21389421	12	5.3	10	84	10	53	39	0	1	58	1.08
21389392--21389453	23	2.7	23	85	5	72	48	1	0	50	1.10
21397928--21397976	24	2.0	24	81	14	57	28	2	4	65	1.22
21398470--21398503	2	17.0	2	93	0	59	50	2	0	47	1.16
21401436--21401476	21	2.0	21	95	0	73	29	14	19	36	1.92
21402174--21402274	33	3.1	33	89	2	159	22	38	13	24	1.91
21402895--21402942	21	2.4	20	86	13	64	70	4	2	22	1.15
21409617--21409661	20	2.2	21	84	11	58	53	6	0	40	1.27
21420336--21420391	28	2.0	28	96	0	103	23	12	32	32	1.92
21422741--21422780	16	2.5	16	91	0	71	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129