genome.fa.s24.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  10  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1580280--1580468	94	2.0	94	98	0	369	25	26	28	19	1.98
1580523--1580575	26	2.0	26	81	0	61	26	20	22	30	1.98
1579376--1582411	997	3.0	989	83	6	3391	25	25	24	24	2.00
1581243--1581611	159	2.3	159	85	0	479	19	28	28	23	1.98
1581585--1581637	26	2.0	26	88	0	79	28	22	18	30	1.98
1582469--1582518	26	1.9	26	91	0	82	28	24	18	30	1.97
1581402--1584291	863	3.3	886	82	6	3480	25	25	24	25	2.00
1584226--1584283	26	2.2	26	84	3	71	29	24	17	29	1.97
1584074--1584656	185	3.2	182	82	3	682	22	28	26	22	1.99
1584601--1584660	26	2.4	25	89	10	88	26	23	20	30	1.98
1586364--1586416	26	2.0	26	92	0	88	26	22	20	30	1.98
1587223--1587273	26	2.0	26	92	0	84	31	23	17	27	1.97
1585503--1588438	888	3.3	888	84	6	3741	25	24	24	25	2.00
1588123--1588174	25	2.0	26	96	3	97	26	26	19	26	1.99
1588428--1588460	9	3.8	9	96	4	59	30	9	12	48	1.71
1590138--1590185	24	2.0	24	95	0	87	16	52	16	14	1.76
1590233--1590285	26	2.0	26	92	0	88	26	22	20	30	1.98
1592903--1592955	26	2.0	26	92	0	88	26	22	22	28	1.99
1590176--1594478	895	4.9	893	83	5	5036	26	24	23	25	2.00
1593795--1593847	26	2.0	26	85	0	70	26	22	20	30	1.98
1594993--1595045	26	2.0	26	85	0	70	32	22	16	28	1.96
1594725--1603620	856	10.0	892	83	6	10326	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1598519--1598571	26	2.0	26	96	0	97	24	28	20	26	1.99
1600281--1600333	26	2.0	26	96	0	97	28	26	18	26	1.98
1606620--1606672	26	2.0	26	92	0	88	28	26	16	28	1.97
1607518--1607570	26	2.0	26	89	7	81	30	24	16	28	1.97
1608376--1608428	26	2.0	26	96	0	97	26	24	20	28	1.99
1605867--1610204	898	4.9	877	85	5	5456	25	24	24	25	2.00
1608187--1610204	899	2.2	900	87	2	2913	24	25	25	25	2.00
1612452--1612504	26	2.0	26	92	0	88	28	24	18	28	1.98
1612265--1623603	866	12.9	855	78	10	9336	26	24	23	25	2.00
1614197--1614249	26	2.0	26	92	0	88	28	24	18	28	1.98
1615108--1615160	26	2.0	26	92	0	88	28	24	18	28	1.98
1625708--1627666	899	2.2	907	86	3	2734	24	24	25	26	2.00
1627814--1628169	159	2.2	159	88	3	502	21	26	28	23	1.99
1628146--1628195	26	1.9	26	95	0	91	26	26	20	28	1.99
1629040--1629394	158	2.2	159	82	1	408	21	28	27	22	1.99
1629368--1629420	26	2.0	26	96	0	97	28	26	18	26	1.98
1630974--1631021	24	2.0	24	95	0	87	16	52	16	14	1.76
1631069--1631121	26	2.0	26	88	0	79	28	22	18	30	1.98
1632872--1632924	26	2.0	26	96	0	97	26	24	20	28	1.99
1633766--1633818	26	2.0	26	96	0	97	26	20	22	30	1.98
1631012--1635341	900	4.9	892	84	3	5327	26	24	23	25	2.00
1634658--1634710	26	2.0	26	81	0	61	24	22	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1635854--1635906	26	2.0	26	88	0	79	30	22	18	28	1.98
1635880--1647960	857	13.7	857	82	7	12806	25	24	24	25	2.00
1641113--1641165	26	2.0	26	96	0	97	28	26	18	26	1.98
1643777--1643826	26	1.9	26	91	0	82	26	28	18	28	1.98
1644669--1644721	26	2.0	26	96	0	97	28	26	18	26	1.98
1646439--1646489	26	2.0	26	96	0	93	29	25	17	27	1.98
1647330--1647382	26	2.0	26	85	7	72	26	22	22	28	1.99
1640233--1647960	879	8.7	891	84	5	9256	26	24	24	25	2.00
1648016--1648068	26	2.0	26	96	0	97	24	26	22	26	2.00
1647274--1649318	673	3.0	672	87	3	2894	27	22	23	26	2.00
1651935--1651987	26	2.0	26	92	0	88	28	26	16	28	1.97
1652834--1652886	26	2.0	26	89	7	81	30	24	16	28	1.97
1651084--1655519	899	5.0	888	86	4	5941	25	24	24	25	2.00
1653693--1653745	26	2.0	26	100	0	106	26	26	20	26	1.99
1654592--1654644	26	2.0	26	92	0	88	28	28	18	24	1.98
1653504--1655519	898	2.2	900	88	1	2965	24	25	24	25	2.00
1656915--1656987	26	2.8	26	100	0	146	26	27	19	27	1.99
1657842--1657894	26	2.0	26	88	0	79	28	22	18	30	1.98
1655574--1669782	905	16.0	894	75	11	10426	25	24	24	25	2.00
1659401--1659657	131	2.0	131	89	0	397	19	27	32	20	1.97
1659716--1659766	26	2.0	26	100	0	102	27	25	19	27	1.99
1660623--1660675	26	2.0	26	92	0	88	24	24	22	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1659737--1669782	871	11.5	871	84	5	11853	25	24	24	25	2.00
1667654--1669333	892	1.9	891	87	3	2388	26	24	23	25	2.00
1670404--1670974	309	1.9	308	92	0	971	25	21	22	29	1.99
1671579--1671647	31	2.2	31	100	0	138	31	20	8	39	1.83
1672635--1673535	464	1.9	464	91	0	1473	33	21	17	27	1.96
1673781--1673833	26	2.0	26	96	0	97	26	24	20	28	1.99
1676447--1676499	26	2.0	26	96	0	97	28	26	18	26	1.98
1676610--1676648	17	2.3	17	100	0	78	12	15	41	30	1.85
1677342--1677394	26	2.0	26	96	0	97	28	26	18	26	1.98
1678230--1678282	26	2.0	26	85	7	72	33	24	15	26	1.95
1673099--1680401	905	8.2	891	83	5	8530	25	24	23	25	2.00
1678930--1678954	12	2.1	12	100	0	50	0	64	28	8	1.22
1679130--1679208	26	3.0	26	96	0	140	27	27	20	24	1.99
1680443--1680495	26	2.0	26	85	7	72	28	20	18	32	1.97
1681332--1681384	26	2.0	26	96	0	97	28	26	18	26	1.98
1682053--1682417	159	2.3	159	89	0	559	19	29	29	22	1.98
1682391--1682442	26	2.0	26	96	3	97	26	25	21	26	1.99
1684142--1684194	26	2.0	26	92	0	88	30	22	20	26	1.98
1685044--1685096	26	2.0	26	100	0	106	26	26	20	26	1.99
1683281--1686261	896	3.3	897	87	3	4162	25	25	24	25	2.00
1685944--1685996	26	2.0	26	92	7	90	30	26	16	26	1.97
1686413--1686517	26	4.0	26	98	0	192	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1686598--1686627	11	2.7	11	100	0	60	16	30	33	20	1.94
1687375--1687427	26	2.0	26	92	0	88	32	22	16	28	1.96
1689139--1689188	26	1.9	26	91	0	82	30	26	18	26	1.98
1692671--1692722	26	2.0	26	89	10	81	26	23	23	26	2.00
1694422--1694472	26	2.0	26	88	0	75	33	23	15	27	1.95
1695281--1695333	26	2.0	26	96	0	97	26	24	20	28	1.99
1695313--1697187	708	2.6	705	92	2	3121	26	24	23	25	2.00
1698831--1698882	26	2.0	25	85	3	68	28	25	21	25	1.99
1700626--1700678	26	2.0	26	96	0	97	28	26	18	26	1.98
1698279--1708815	893	11.5	893	74	11	6204	25	24	23	25	2.00
1701520--1701572	26	2.0	26	92	0	88	30	22	20	26	1.98
1701526--1702384	427	2.0	428	88	2	1280	24	22	25	27	2.00
1702856--1702908	26	2.0	26	88	0	79	24	26	20	28	1.99
1705324--1705376	26	2.0	26	96	0	97	26	24	20	28	1.99
1706218--1706270	26	2.0	26	85	0	70	28	26	15	30	1.96
1708023--1708075	26	2.0	26	96	0	97	28	26	18	26	1.98
1713850--1713902	26	2.0	26	92	0	88	26	26	20	26	1.99
1715768--1716846	541	2.0	539	91	1	1748	28	24	20	26	1.99
1717019--1717071	26	2.0	26	85	0	70	24	24	18	32	1.97
1717917--1717969	26	2.0	26	85	0	70	33	22	13	30	1.92
1718819--1718871	26	2.0	26	96	0	97	28	26	18	26	1.98
1720603--1720658	30	2.0	26	86	13	76	25	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1722374--1722424	26	2.0	26	92	0	84	27	25	17	29	1.98
1723273--1723325	26	2.0	26	85	0	70	22	22	22	32	1.98
1716304--1731121	899	16.7	889	82	7	15957	26	24	24	25	2.00
1725066--1725118	26	2.0	26	100	0	106	26	26	20	26	1.99
1726803--1726855	26	2.0	26	92	0	88	26	22	20	30	1.98
1727680--1727731	26	2.0	26	88	7	79	26	23	21	28	1.99
1729444--1729496	26	2.0	26	96	0	97	26	24	20	28	1.99
1728583--1731134	901	2.8	897	87	3	3630	26	24	23	25	2.00
1730345--1730397	26	2.0	26	100	0	106	30	26	16	26	1.97
1732175--1732458	59	4.7	59	79	9	308	33	11	9	45	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129