genome.fa.s24.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  127  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22416647--22416693	3	15.7	3	81	0	58	42	0	0	57	0.98
22416839--22417051	110	1.9	110	81	5	252	35	15	22	26	1.94
22416913--22417191	133	2.1	133	84	4	359	36	18	21	24	1.95
22417043--22417301	110	2.3	110	84	2	322	37	18	20	23	1.94
22416849--22417942	243	4.5	244	78	7	1060	38	18	20	23	1.93
22417257--22417324	23	3.0	23	81	10	77	29	19	22	29	1.98
22417154--22417434	133	2.1	133	86	3	379	36	17	21	24	1.95
22417287--22417655	110	3.3	110	82	3	420	39	18	19	22	1.92
22417629--22417678	23	2.2	23	85	7	66	32	20	22	26	1.98
22417507--22417922	133	3.1	132	85	3	521	38	19	19	22	1.93
22417877--22417922	23	2.0	23	91	0	74	26	26	23	23	2.00
22418085--22418150	22	3.0	22	80	4	69	37	22	13	25	1.91
22418274--22418378	41	2.6	41	87	6	142	28	16	20	35	1.94
22420076--22420119	14	3.0	14	81	18	54	6	6	4	81	0.97
22420082--22420120	21	1.9	20	84	5	51	5	5	5	84	0.86
22426691--22426721	16	1.9	16	93	0	53	19	0	35	45	1.51
22426680--22426736	30	1.9	30	85	7	80	17	0	33	49	1.47
22426687--22426791	51	2.1	50	82	7	122	16	1	29	52	1.54
22426744--22427005	15	16.7	15	69	21	130	20	2	29	47	1.64
22426734--22426998	16	16.9	16	70	18	132	21	2	28	47	1.64
22426744--22426965	94	2.4	94	97	0	419	19	3	29	47	1.65
22426819--22427006	15	11.8	17	73	17	138	21	2	28	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22428453--22428487	15	2.3	15	100	0	70	5	11	0	82	0.82
22428508--22428540	15	2.2	15	94	0	57	48	0	0	51	1.00
22429561--22429595	14	2.6	14	90	4	54	80	11	8	0	0.92
22430662--22430704	15	3.0	14	83	6	59	46	37	0	16	1.47
22430663--22430704	14	2.9	15	85	7	59	47	38	0	14	1.44
22430742--22430820	29	2.7	29	80	4	86	45	34	0	20	1.51
22432547--22432590	22	2.0	22	95	0	79	31	11	13	43	1.80
22435577--22435628	23	2.3	23	100	0	104	55	5	17	21	1.62
22435577--22435636	23	2.6	23	92	5	86	55	5	18	21	1.62
22436551--22436594	22	2.0	22	95	0	79	31	11	13	43	1.80
22447764--22447808	21	2.1	21	84	8	56	35	24	13	26	1.92
22449786--22450132	172	2.0	172	88	2	509	49	7	19	23	1.73
22450518--22451593	237	4.5	236	84	5	1243	35	12	12	39	1.81
22450518--22451464	484	2.0	484	85	3	1282	35	12	13	39	1.82
22451540--22451685	61	2.3	61	83	5	166	34	16	10	38	1.83
22451572--22451687	61	1.9	61	90	0	187	34	18	9	37	1.84
22451326--22451907	303	1.9	298	80	6	656	35	12	11	40	1.79
22451632--22452091	240	1.9	238	80	4	532	36	11	11	40	1.78
22452840--22452922	28	3.0	28	87	0	112	22	3	19	54	1.60
22452843--22452939	28	3.5	28	82	0	77	23	4	21	50	1.66
22455993--22456020	2	14.0	2	100	0	56	50	0	0	50	1.00
22456435--22456548	29	3.9	28	78	11	111	42	19	7	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22456439--22456548	31	3.6	31	78	10	120	43	17	6	32	1.74
22456434--22456548	60	1.9	59	87	5	169	42	19	6	31	1.77
22456435--22456548	28	3.9	29	76	15	108	42	19	7	31	1.78
22456433--22456570	31	4.7	29	76	15	97	43	17	7	31	1.76
22456714--22456985	138	2.0	137	91	2	438	26	23	25	25	2.00
22457871--22457920	2	25.0	2	81	0	55	54	2	2	42	1.23
22457871--22457920	16	3.1	16	82	0	64	54	2	2	42	1.23
22458365--22458404	3	13.0	3	94	5	71	65	2	32	0	1.06
22459380--22459465	42	2.0	43	84	2	111	40	15	9	34	1.79
22460063--22460168	33	3.2	33	76	0	113	30	15	16	38	1.89
22463309--22463346	13	2.9	13	85	11	51	10	0	5	84	0.77
22463321--22463355	16	2.2	16	89	0	52	14	2	8	74	1.17
22465173--22465201	12	2.3	13	94	5	51	17	3	20	58	1.53
22466037--22466172	62	2.2	61	79	6	157	35	12	12	39	1.81
22466934--22467003	34	2.1	34	84	10	90	24	17	14	44	1.85
22475111--22475155	21	2.1	22	87	4	65	37	24	20	17	1.93
22475222--22475257	2	18.0	2	100	0	72	50	0	0	50	1.00
22480096--22480124	2	15.0	2	92	7	51	51	0	0	48	1.00
22483381--22483428	24	1.9	26	83	8	64	52	12	8	27	1.67
22483947--22484019	31	2.5	28	72	18	69	43	5	1	49	1.34
22488282--22488463	48	3.9	48	88	9	277	35	26	13	24	1.92
22488282--22488460	45	3.8	45	87	10	254	35	26	13	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22488282--22488463	93	1.9	95	90	7	291	35	26	13	24	1.92
22497907--22498185	142	2.0	142	93	0	477	31	20	13	34	1.91
22499598--22499641	10	4.7	9	81	10	52	4	2	11	81	0.92
22500738--22500782	13	3.4	13	78	6	54	40	0	0	60	0.97
22501888--22501985	7	13.6	7	69	21	60	15	1	12	71	1.20
22501870--22501924	25	2.2	26	93	3	94	9	1	9	80	0.99
22501872--22501931	19	3.2	19	75	9	52	10	1	10	78	1.04
22501872--22501926	12	4.5	12	80	13	67	9	1	10	78	1.05
22501877--22501985	30	4.2	25	76	14	85	14	1	11	72	1.20
22501888--22501961	30	2.3	32	84	11	91	13	1	12	72	1.18
22502231--22502560	163	2.0	163	94	1	581	36	14	13	35	1.86
22503833--22503870	2	20.5	2	84	15	55	50	0	0	50	1.00
22506110--22506232	65	1.9	66	81	6	153	38	10	8	43	1.69
22508244--22508285	5	8.6	5	80	15	52	52	2	0	45	1.13
22508661--22508700	4	10.0	4	89	10	64	47	0	0	52	1.00
22509539--22509601	19	3.0	22	82	13	64	9	14	0	76	1.02
22509557--22509606	15	3.4	14	86	8	64	4	18	0	78	0.91
22509550--22509612	10	6.2	10	81	9	74	4	19	0	76	0.96
22509568--22509605	19	2.0	20	94	5	69	0	21	0	78	0.74
22509547--22509606	29	2.0	31	87	6	88	5	16	0	78	0.92
22510899--22510935	18	2.0	20	89	10	60	64	0	0	35	0.94
22527056--22527101	23	2.0	23	83	8	58	36	4	6	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22529625--22529673	23	2.1	23	96	0	89	48	12	8	30	1.69
22535508--22535555	24	1.9	26	83	8	64	52	12	8	27	1.67
22536030--22536070	21	2.0	21	90	4	66	51	4	0	43	1.23
22556501--22556544	3	14.7	3	100	0	88	31	0	0	68	0.90
22565098--22565132	9	4.0	9	88	3	54	48	0	11	40	1.39
22565562--22565609	25	2.0	25	87	4	71	45	6	6	41	1.54
22565815--22565848	17	2.0	17	94	0	59	14	11	26	47	1.79
22566417--22566455	20	2.0	20	84	0	51	48	2	7	41	1.45
22566467--22566536	25	2.9	25	72	8	65	64	0	1	34	1.03
22567400--22567437	19	2.0	19	85	10	51	42	0	2	55	1.14
22567462--22567512	18	2.8	19	76	5	52	62	1	1	33	1.17
22570329--22570382	19	2.9	19	83	2	74	37	1	24	37	1.66
22570762--22570797	19	1.9	19	94	5	65	80	0	16	2	0.83
22571726--22571758	14	2.4	14	90	10	50	69	0	6	24	1.10
22587896--22587948	27	2.0	27	85	7	72	67	1	1	28	1.11
22587890--22587971	24	3.5	24	78	17	75	62	1	2	34	1.16
22587890--22587984	23	4.1	23	72	21	65	61	2	2	34	1.20
22587987--22588044	22	2.7	22	81	7	66	46	0	0	53	1.00
22600497--22600553	30	1.9	29	96	3	105	36	1	3	57	1.26
22606149--22606179	2	15.5	2	100	0	62	48	0	0	51	1.00
22611630--22611664	18	1.9	18	88	0	52	54	0	0	45	0.99
22621146--22621335	94	2.0	94	100	0	380	36	16	23	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22629081--22629121	20	2.0	22	85	9	59	48	0	4	46	1.23
22629102--22629140	16	2.4	17	86	4	53	58	0	2	38	1.12
22629442--22629498	13	4.2	13	76	8	51	43	1	0	54	1.10
22629469--22629548	10	7.4	10	72	18	54	46	2	2	48	1.29
22631392--22631458	31	2.1	33	81	10	77	46	2	0	50	1.16
22645767--22645828	30	2.1	29	88	5	90	38	14	8	38	1.76
22645776--22645833	30	1.9	31	92	3	100	37	13	8	39	1.76
22651374--22651432	30	2.0	30	89	0	91	42	11	13	32	1.81
22651375--22651439	30	2.2	30	85	0	85	44	10	10	33	1.74
22654969--22655005	12	3.1	12	96	0	65	27	24	32	16	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129